Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

62666721 .. 62669044

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATGAGTTGATGTCCAAGGGAATGCAGAATGCTAACAAGGCTCTTCTTTCTGGATGTTCCGCTGGGGTTCTGGCATCCATGCTACACTGTGATGTGTTCTGGGACTTGTTTCCATCCAGTACCACAGTGAAATGTTCCTTGATGCCAGGAGTACTTAGCTTGCAGGAAGTGCAAAACAATCTTCCGAAGACTTGTATCAACCACCTAGATCCAACTTCTTGCTTCTTTCCCCAGAAGTTAGTTGCAAATGTTAAGATGCCAATGTTTCTTATAAATGCAGCCTATGATGCTTGGCAGCCCCTCCATCTGGTGATCCTCATGGTTTATATATGGAATGAATGCAGATCAAACCATGCAAATTATTTCTCAATGACCAGTGAAAATGGTTTATTCATAAACTCTTGCTTTGCTCACTGCCAGTCTGAGAGACAAAATACAAGGTTTGCTGATGGTTCTCCTCTTCTTGAAAACCAGGCAATTGCACTTTTCTGGGGGGACCGGTACTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

172

Amino Acids

19.29

Weight (kDa)

5.65

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	1 - 48	9.6e-16	Pectinacetylesterase
PAE	PF03283	51 - 122	3.5e-16	Pectinacetylesterase
PAE	PF03283	121 - 170	6.1e-08	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	206, 310
AfaI	GTAC	3 cut(s)	124, 156, 506
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	501
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	148, 474
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	206, 310
ApeKI	GCWGC	2 cut(s)	281, 298
ArsI	GACNNNNNNTTYG	1 cut(s)	491
AsiGI	ACCGGT	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	293, 310
BccI	CCATC	3 cut(s)	124, 315, 446
BciT130I	CCWGG	2 cut(s)	150, 476
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	282, 299
BlsI	GCNGC	2 cut(s)	283, 300
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	150, 476
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	150, 476
BmsI	GCATC	4 cut(s)	86, 135, 249, 280
BpiI	GAAGAC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	3 cut(s)	120, 378, 421
BseBI	CCWGG	2 cut(s)	150, 476
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	4 cut(s)	10, 62, 77, 116
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	120, 378, 421
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	293, 310
BseYI	CCCAGC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	119, 512
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	119, 512
BsmI	GAATGC	3 cut(s)	30, 37, 347
Bsp143I	GATC	3 cut(s)	211, 315, 347
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	206, 310
BspQI	GCTCTTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	120, 378, 421
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	211, 315, 347
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	150, 476
Bst4CI	ACNGT	2 cut(s)	92, 130
Bst6I	CTCTTC	2 cut(s)	51, 468
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	158, 426
BstF5I	GGATG	4 cut(s)	10, 62, 77, 116
BstKTI	GATC	3 cut(s)	214, 318, 350
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	211, 315, 347
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 172, 290
BstNI	CCWGG	2 cut(s)	150, 476
BstSCI	CCNGG	2 cut(s)	148, 474
BstV1I	GCAGC	2 cut(s)	293, 310
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	10, 62, 77, 116
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	4 cut(s)	88, 135, 385, 415
Cac8I	GCNNGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	123, 155, 505
CspAI	ACCGGT	1 cut(s)	501
CviAII	CATG	3 cut(s)	82, 322, 356
CviJI	RGCY	4 cut(s)	44, 162, 284, 301
CviKI_1	RGCY	4 cut(s)	44, 162, 284, 301
CviQI	GTAC	3 cut(s)	123, 155, 505
DdeI	CTNAG	2 cut(s)	158, 426
DpnI	GATC	3 cut(s)	213, 317, 349
DpnII	GATC	3 cut(s)	211, 315, 347
Eam1104I	CTCTTC	2 cut(s)	51, 468
EarI	CTCTTC	2 cut(s)	51, 468
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	499
EcoRII	CCWGG	2 cut(s)	148, 474
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	85, 325, 359
FaiI	YATR	9 cut(s)	83, 275, 288, 323, 330, 332, 334, 357, 398
FaqI	GGGAC	2 cut(s)	119, 512
FatI	CATG	3 cut(s)	81, 321, 355
Fnu4HI	GCNGC	2 cut(s)	282, 299
FokI	GGATG	4 cut(s)	17, 64, 69, 103
Fsp4HI	GCNGC	2 cut(s)	282, 299
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	282, 299
GsaI	CCCAGC	1 cut(s)	69
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	3 cut(s)	85, 325, 359
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	189, 427
Hpy188III	TCNNGA	2 cut(s)	54, 467
HpyCH4III	ACNGT	2 cut(s)	92, 130
HpyCH4V	TGCA	8 cut(s)	28, 166, 175, 248, 281, 345, 359, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 172, 290
HpyF3I	CTNAG	2 cut(s)	158, 426
Hsp92II	CATG	3 cut(s)	85, 325, 359
Kzo9I	GATC	3 cut(s)	211, 315, 347
LguI	GCTCTTC	1 cut(s)	51
Lsp1109I	GCAGC	2 cut(s)	293, 310
LweI	GCATC	4 cut(s)	86, 135, 249, 280
MaeI	CTAG	1 cut(s)	209
MalI	GATC	3 cut(s)	213, 317, 349
MboI	GATC	3 cut(s)	211, 315, 347
MboII	GAAGA	4 cut(s)	38, 176, 202, 455
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	361, 480
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	314, 329, 471
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	150, 476
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	3 cut(s)	30, 37, 347
MvaI	CCWGG	2 cut(s)	150, 476
MwoI	GCNNNNNNNGC	3 cut(s)	41, 172, 290
NdeII	GATC	3 cut(s)	211, 315, 347
NlaIII	CATG	3 cut(s)	85, 325, 359
NlaIV	GGNNCC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	3 cut(s)	30, 37, 347
PinAI	ACCGGT	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	283, 300
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	148, 474
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	148, 474
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	3 cut(s)	124, 156, 506
RsaNI	GTAC	3 cut(s)	123, 155, 505
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	282, 299
Sau3AI	GATC	3 cut(s)	211, 315, 347
Sau96I	GGNCC	1 cut(s)	499
ScaI	AGTACT	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	150, 476
SetI	ASST	3 cut(s)	164, 210, 446
SfaNI	GCATC	4 cut(s)	86, 135, 249, 280
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	361, 480
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	148, 474
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	92, 130
TasI	AATT	2 cut(s)	361, 480
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	95, 135, 385, 422
TseI	GCWGC	2 cut(s)	281, 298
TspDTI	ATGAA	2 cut(s)	354, 385
TspRI	CASTG	4 cut(s)	95, 135, 385, 422
VpaK11BI	GGWCC	1 cut(s)	499
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.