Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7961244.1

Orthogroup ID

OG0011021

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 500

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7961244.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

tgagcgggaggaaagggaaggacattgcgagattggccaaaggcttgtctctaatcgccgaggaatttgcgaagcgatctccgactctccacagcgccaagaacggcgatttccaagccctgctaaaaaacgccgtcgtttccgccaccgacctctccggcctcaccaaaggcaccctctcccgattctctaatgctccttctaaccctacctcccccactcccactgctaacaaacccgattccgtcgtctacttcaaccaccaccacgaacctcctcctcctcagccgccgcagcagcttgaagaacaaccgccgccgccggcaaacaatgccgcatcctccgtggaggtggaggtgcttgattcgagagctcaacaaccgttagaaccagagacacagtcgccacaacctcagccaccgccgccgccgccattgcagaggcggaagcccagagagagacgagttccttccactcccttctctagagcactggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0015994 GO:0015996 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042180 GO:0042181 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

165

Amino Acids

17.8

Weight (kDa)

9.81

Isoelectric Point (pI)

77.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01660
fragaria_vesca	FvH4_1g26110 FvH4_1g26110 FvH4_1g26110
malus_domestica	MD09G1291600.v1.1
prunus_persica	Prupe.3G001200_v2.0.a1
pyrus_communis	pycom09g19950 pycom17g28190
rosa_chinensis	RchiOBHm_Chr3g0485611
rosa_laevigata	RLG00000023142
rosa_multiflora	Rmu_co7961244.1_g000001 Rmu_sc0001272.1_g000006
rosa_roxburghii	Rroxscaffold_6G00396590 Rroxscaffold_6G00396900
rosa_rugosa	Rorug03G0220200
rosa_samantha	Rh3AG268700 Rh3BG304400 Rh3CG302900 Rh3DG299300
rosa_wichuraiana	Rw3G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	258, 304
AleI	CACNNNNGTG	1 cut(s)	495
AluBI	AGCT	2 cut(s)	300, 373
AluI	AGCT	2 cut(s)	300, 373
Alw21I	GWGCWC	2 cut(s)	375, 492
Alw26I	GTCTC	3 cut(s)	53, 388, 453
AoxI	GGCC	2 cut(s)	35, 159
ApeKI	GCWGC	2 cut(s)	294, 297
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	375, 492
BbvCI	CCTCAGC	2 cut(s)	284, 413
BbvI	GCAGC	2 cut(s)	306, 309
BceAI	ACGGC	2 cut(s)	118, 120
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcoDI	GTCTC	3 cut(s)	53, 388, 453
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	2 cut(s)	284, 413
BsaJI	CCNNGG	2 cut(s)	59, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	23, 433
BseDI	CCNNGG	2 cut(s)	59, 344
BseGI	GGATG	1 cut(s)	337
BseMI	GCAATG	2 cut(s)	23, 433
BseMII	CTCAG	2 cut(s)	298, 427
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	3 cut(s)	266, 269, 272
BseXI	GCAGC	2 cut(s)	306, 309
BshFI	GGCC	2 cut(s)	37, 161
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	375, 492
BsiSI	CCGG	2 cut(s)	158, 322
BsmAI	GTCTC	3 cut(s)	53, 388, 453
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	37, 161
Bsp1286I	GDGCHC	2 cut(s)	375, 492
Bsp143I	GATC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	37, 161
BspCNI	CTCAG	2 cut(s)	297, 426
BspLI	GGNNCC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	23, 433
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	59, 344
BssMI	GATC	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	383, 401
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	284, 413
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	3 cut(s)	53, 388, 453
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 294, 297, 331, 423, 429, 435
BstV1I	GCAGC	2 cut(s)	306, 309
BsuRI	GGCC	2 cut(s)	37, 161
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	224, 490
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	321
CviJI	RGCY	9 cut(s)	37, 44, 118, 161, 288, 300, 373, 417, 450
CviKI_1	RGCY	9 cut(s)	37, 44, 118, 161, 288, 300, 373, 417, 450
DdeI	CTNAG	2 cut(s)	284, 413
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	2 cut(s)	132, 459
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	37, 161
HapII	CCGG	2 cut(s)	158, 322
HhaI	GCGC	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	84, 185, 241, 364
HpaII	CCGG	2 cut(s)	158, 322
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	182, 368, 485
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	139, 250
HpyAV	CCTTC	4 cut(s)	12, 209, 479, 489
HpyCH4III	ACNGT	2 cut(s)	383, 401
HpyCH4V	TGCA	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 294, 297, 331, 423, 429, 435
HpyF3I	CTNAG	2 cut(s)	284, 413
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	6 cut(s)	133, 171, 335, 404, 465, 478
Lsp1109I	GCAGC	2 cut(s)	306, 309
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	485
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	5
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	375, 492
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	37
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	37
MspI	CCGG	2 cut(s)	158, 322
MwoI	GCNNNNNNNGC	7 cut(s)	34, 294, 297, 331, 423, 429, 435
NaeI	GCCGGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	76
NgoMIV	GCCGGC	1 cut(s)	321
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	84
OliI	CACNNNNGTG	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	185, 241, 364
PflFI	GACNNNGTC	1 cut(s)	399
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	375, 492
SetI	ASST	8 cut(s)	155, 214, 276, 302, 353, 359, 375, 414
SfaNI	GCATC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	383, 401
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	64
TauI	GCSGC	8 cut(s)	291, 294, 318, 321, 337, 426, 429, 432
TfiI	GAWTC	3 cut(s)	185, 241, 364
TscAI	CASTG	2 cut(s)	231, 497
TseI	GCWGC	2 cut(s)	294, 297
TspGWI	ACGGA	2 cut(s)	234, 333
TspRI	CASTG	2 cut(s)	231, 497
Tth111I	GACNNNGTC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.