Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011021

Physical Location & Seq

Genomic Coordinates Reverse (-)

18467434 .. 18470190

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTAGTGAGCGGGAGGAAAGGGAAGGACATTGCGAGATTGGCCAAAGGCTTGTCTCTAATCGCCGAGGAATTTGCGAAGCGATCTCCGACTCTCCAGAGCGCCAAGAACGGCGATTTCCAAGCCCTGCTCAAAAACGCCGTCGTTTCCGCCACCGACCTCTCCGGCCTCACCAAAGGCACCCTCTCCCAATTCTCCAATGCTCCTTCTAACCCTACCTCCGCCGGTCCCACTGCTAACAAACCCGATTCCGTCGTCTACTTCGACCACCACGACGACGAACCTCCTCCTCCTCCTCCGCAGCCTCAGGTTGAAGAACAACCGCCGCCGCCGCCGGCAAACAATGCCGCATCCTCCGTGGAGGTGGAGGTGCTCGATTCGAGAGCTCAACAACCGTTAGAACCAGAGACGCAGTCGCCAGAACCACAACCTCCGCCGCCGCCGCCGCCATTGCAGAGGCGGAAGCCCAGACAGAGACGAGTTCCTTCCACTCCTTTCTCTAGAGCACTGGGGTTTGCTGGTCTGGGAGCTGGGCTTGCCTGGGGAACACTTCAGGAGTCTACCAAGAGACTCATTTACGGCACGCCGCAGAGCTCACCGGGCAACCAATCTGCTGTTTCTCCATTTTTGTCTCCACAGAATGCAGAGCGTTTGGCTCTTGCACTCTGTCGAATGCGGGGAGCTGCTCTCAAATTGGGGCAGATGTTGAGCATACAGGACGAATCGCTTGTGCCCGCTCCTATATTGGCTGCTCTCGATATTGTTCGTCAAGGTGCAGATGTGATGCCAAGGGCCCAGCTCAATCAGGTTTTGGATGCTGAGTTGGGACCTGGTTGGTCATCAAAGTTAACAAGTTTCGATTATGAACCTTTGGCTTCTGCAAGTATAGGCCAGACTCTACCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0015994 GO:0015996 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042180 GO:0042181 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

302

Amino Acids

32.04

Weight (kDa)

6.76

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	255 - 298	3e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01660
fragaria_vesca	FvH4_1g26110 FvH4_1g26110 FvH4_1g26110
malus_domestica	MD09G1291600.v1.1
prunus_persica	Prupe.3G001200_v2.0.a1
pyrus_communis	pycom09g19950 pycom17g28190
rosa_chinensis	RchiOBHm_Chr3g0485611
rosa_laevigata	RLG00000023142
rosa_multiflora	Rmu_co7961244.1_g000001 Rmu_sc0001272.1_g000006
rosa_roxburghii	Rroxscaffold_6G00396590 Rroxscaffold_6G00396900
rosa_rugosa	Rorug03G0220200
rosa_samantha	Rh3AG268700 Rh3BG304400 Rh3CG302900 Rh3DG299300
rosa_wichuraiana	Rw3G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	2 cut(s)	12, 737
AccI	GTMKAC	2 cut(s)	258, 560
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	539, 829
AluBI	AGCT	5 cut(s)	386, 530, 594, 683, 799
AluI	AGCT	5 cut(s)	386, 530, 594, 683, 799
Alw21I	GWGCWC	4 cut(s)	375, 388, 508, 596
Alw26I	GTCTC	5 cut(s)	60, 401, 469, 562, 636
AoxI	GGCC	4 cut(s)	42, 166, 792, 889
ApaI	GGGCCC	1 cut(s)	796
ApeKI	GCWGC	3 cut(s)	301, 683, 749
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	227, 792, 793, 827
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	163, 588
AvaII	GGWCC	2 cut(s)	227, 827
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	2 cut(s)	735, 796
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	3 cut(s)	388, 596, 796
Bbv12I	GWGCWC	4 cut(s)	375, 388, 508, 596
BbvI	GCAGC	3 cut(s)	313, 670, 736
BceAI	ACGGC	3 cut(s)	125, 127, 595
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	2 cut(s)	541, 831
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	5 cut(s)	60, 401, 469, 562, 636
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	105
Bme1390I	CCNGG	3 cut(s)	541, 600, 831
Bme18I	GGWCC	2 cut(s)	227, 827
BmgT120I	GGNCC	4 cut(s)	227, 792, 793, 827
BmiI	GGNNCC	4 cut(s)	181, 229, 794, 828
BmrFI	CCNGG	3 cut(s)	541, 600, 831
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	3 cut(s)	359, 774, 805
BmuI	ACTGGG	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpmI	CTGGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	600
BsaJI	CCNNGG	4 cut(s)	66, 357, 540, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse118I	RCCGGY	2 cut(s)	224, 334
Bse1I	ACTGG	1 cut(s)	513
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	30, 449
BseBI	CCWGG	2 cut(s)	541, 831
BseDI	CCNNGG	4 cut(s)	66, 357, 540, 788
BseGI	GGATG	2 cut(s)	350, 820
BseMI	GCAATG	2 cut(s)	30, 449
BseMII	CTCAG	2 cut(s)	320, 810
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	4 cut(s)	276, 279, 282, 285
BseSI	GKGCMC	2 cut(s)	735, 796
BseXI	GCAGC	3 cut(s)	313, 670, 736
BseYI	CCCAGC	2 cut(s)	530, 795
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	44, 168, 794, 891
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	4 cut(s)	375, 388, 508, 596
BsiSI	CCGG	4 cut(s)	165, 225, 335, 599
BslFI	GGGAC	2 cut(s)	213, 840
BsmAI	GTCTC	5 cut(s)	60, 401, 469, 562, 636
BsmBI	CGTCTC	2 cut(s)	401, 469
BsmFI	GGGAC	2 cut(s)	213, 840
BsmI	GAATGC	2 cut(s)	646, 678
BsnI	GGCC	4 cut(s)	44, 168, 794, 891
Bsp120I	GGGCCC	1 cut(s)	792
Bsp1286I	GDGCHC	6 cut(s)	375, 388, 508, 596, 735, 796
Bsp143I	GATC	1 cut(s)	83
BspANI	GGCC	4 cut(s)	44, 168, 794, 891
BspCNI	CTCAG	2 cut(s)	319, 811
BspLI	GGNNCC	4 cut(s)	181, 229, 794, 828
BspT107I	GGYRCC	1 cut(s)	179
BsrBI	CCGCTC	2 cut(s)	12, 737
BsrDI	GCAATG	2 cut(s)	30, 449
BsrFI	RCCGGY	2 cut(s)	224, 334
BsrI	ACTGG	1 cut(s)	513
BssAI	RCCGGY	2 cut(s)	224, 334
BssECI	CCNNGG	4 cut(s)	66, 357, 540, 788
BssMI	GATC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	788
Bst2UI	CCWGG	2 cut(s)	541, 831
Bst4CI	ACNGT	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	336, 537, 584, 735
BstDEI	CTNAG	2 cut(s)	306, 819
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	350, 820
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	5 cut(s)	60, 401, 469, 562, 636
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 331, 344, 442, 445, 451, 536, 600
BstNI	CCWGG	2 cut(s)	541, 831
BstSCI	CCNGG	3 cut(s)	539, 598, 829
BstSLI	GKGCMC	2 cut(s)	735, 796
BstV1I	GCAGC	3 cut(s)	313, 670, 736
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	4 cut(s)	44, 168, 794, 891
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	350, 820
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 506
Cac8I	GCNNGC	4 cut(s)	336, 537, 584, 735
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	224, 334
Cfr13I	GGNCC	4 cut(s)	227, 792, 793, 827
CseI	GACGC	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	306, 819
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	42
EciI	GGCGGA	4 cut(s)	139, 211, 423, 475
Ecl136II	GAGCTC	2 cut(s)	386, 594
Eco130I	CCWWGG	1 cut(s)	788
Eco24I	GRGCYC	3 cut(s)	388, 596, 796
Eco47I	GGWCC	2 cut(s)	227, 827
Eco53kI	GAGCTC	2 cut(s)	386, 594
Eco57I	CTGAAG	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	306
EcoICRI	GAGCTC	2 cut(s)	386, 594
EcoO109I	RGGNCCY	2 cut(s)	792, 827
EcoRII	CCWGG	2 cut(s)	539, 829
EcoT14I	CCWWGG	1 cut(s)	788
EcoT38I	GRGCYC	3 cut(s)	388, 596, 796
ErhI	CCWWGG	1 cut(s)	788
Esp3I	CGTCTC	2 cut(s)	401, 469
FaiI	YATR	4 cut(s)	713, 743, 864, 887
FaqI	GGGAC	2 cut(s)	213, 840
FauI	CCCGC	3 cut(s)	5, 669, 742
FblI	GTMKAC	2 cut(s)	258, 560
FokI	GGATG	2 cut(s)	337, 827
FriOI	GRGCYC	3 cut(s)	388, 596, 796
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	103
GsaI	CCCAGC	2 cut(s)	534, 799
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	4 cut(s)	44, 168, 794, 891
HapII	CCGG	4 cut(s)	165, 225, 335, 599
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HinfI	GANTC	7 cut(s)	91, 248, 377, 557, 570, 722, 895
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	4 cut(s)	165, 225, 335, 599
HphI	GGTGA	2 cut(s)	163, 588
Hpy166II	GTNNAC	3 cut(s)	259, 561, 849
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	5 cut(s)	97, 381, 501, 554, 755
Hpy8I	GTNNAC	3 cut(s)	259, 561, 849
Hpy99I	CGWCG	4 cut(s)	146, 257, 278, 281
HpyAV	CCTTC	3 cut(s)	19, 216, 495
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	454, 644, 662, 776, 881
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 331, 344, 442, 445, 451, 536, 600
HpyF3I	CTNAG	2 cut(s)	306, 819
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	4 cut(s)	208, 527, 680, 742
Lsp1109I	GCAGC	3 cut(s)	313, 670, 736
LweI	GCATC	3 cut(s)	359, 774, 805
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	1 cut(s)	501
MalI	GATC	1 cut(s)	85
MbiI	CCGCTC	2 cut(s)	12, 737
MboI	GATC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	6 cut(s)	375, 388, 508, 596, 735, 796
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	3 cut(s)	71, 191, 692
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	4 cut(s)	85, 564, 566, 889
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	848
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	4 cut(s)	165, 225, 335, 599
MspR9I	CCNGG	3 cut(s)	541, 600, 831
Mva1269I	GAATGC	2 cut(s)	646, 678
MvaI	CCWGG	2 cut(s)	541, 831
MwoI	GCNNNNNNNGC	8 cut(s)	41, 331, 344, 442, 445, 451, 536, 600
NaeI	GCCGGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	600
NdeII	GATC	1 cut(s)	83
NgoMIV	GCCGGC	1 cut(s)	334
NlaIV	GGNNCC	4 cut(s)	181, 229, 794, 828
NmeAIII	GCCGAG	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 270
PctI	GAATGC	2 cut(s)	646, 678
PdiI	GCCGGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	248, 377, 722
PflFI	GACNNNGTC	1 cut(s)	412
PleI	GAGTC	4 cut(s)	85, 564, 565, 889
PpsI	GAGTC	4 cut(s)	85, 564, 565, 889
PpuMI	RGGWCCY	1 cut(s)	827
Psp124BI	GAGCTC	2 cut(s)	388, 596
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	539, 829
PspFI	CCCAGC	2 cut(s)	530, 795
PspGI	CCWGG	2 cut(s)	539, 829
PspN4I	GGNNCC	4 cut(s)	181, 229, 794, 828
PspOMI	GGGCCC	1 cut(s)	792
PspPI	GGNCC	4 cut(s)	227, 792, 793, 827
PspPPI	RGGWCCY	1 cut(s)	827
PsyI	GACNNNGTC	1 cut(s)	412
SacI	GAGCTC	2 cut(s)	388, 596
SaqAI	TTAA	1 cut(s)	848
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	4 cut(s)	227, 792, 793, 827
SchI	GAGTC	4 cut(s)	85, 564, 566, 889
ScrFI	CCNGG	3 cut(s)	541, 600, 831
SduI	GDGCHC	6 cut(s)	375, 388, 508, 596, 735, 796
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	3 cut(s)	359, 774, 805
SinI	GGWCC	2 cut(s)	227, 827
Sse9I	AATT	3 cut(s)	71, 191, 692
SspMI	CTAG	1 cut(s)	501
SstI	GAGCTC	2 cut(s)	388, 596
StyD4I	CCNGG	3 cut(s)	539, 598, 829
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	6 cut(s)	264, 375, 380, 670, 756, 858
TasI	AATT	3 cut(s)	71, 191, 692
TauI	GCSGC	9 cut(s)	328, 331, 334, 350, 439, 442, 445, 448, 589
TfiI	GAWTC	3 cut(s)	248, 377, 722
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	2 cut(s)	238, 513
TseI	GCWGC	3 cut(s)	301, 683, 749
TspDTI	ATGAA	1 cut(s)	879
TspGWI	ACGGA	2 cut(s)	241, 346
TspRI	CASTG	2 cut(s)	238, 513
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	227, 827
XapI	RAATTY	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	500
XmiI	GTMKAC	2 cut(s)	258, 560
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.