FvH4_1g26451

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018362
Physical Location & Seq
Forward (+)
18288656 .. 18289289
634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26451.t1

Sequence Viewer

Length: 276 bp
ATGGAGGTTAGTCAGGTTACACGGCGGCGTTTGGCATTGCTCACTGTGGGAGTAGCTCTTCTCTCTTGTTTGGCTACTTGCACTGATGTGGAAAAGCTTCGCGACAACATTGACTTCAGCTGCAGCCAAACTGGAATAGACTGCAGACCTATTCTGCCGAGCGGTAATTGCTTTGATCCGGACAATGTTATCTCACATGCTTCAGTTGCGATGAATCTGTTCTACAAGGCCACCGGAAAGAACCTTGGGACTGTCATTTCAATGGCACCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

92

Amino Acids

9.78

Weight (kDa)

6.52

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 22 - 81 2.3e-10 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 162
AccII CGCG 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 2 cut(s) 25, 162
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 100, 186
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 1 cut(s) 261
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 3 cut(s) 56, 97, 120
AluI AGCT 3 cut(s) 56, 97, 120
AlwI GGATC 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 120, 123
AsiGI ACCGGT 1 cut(s) 268
Asp700I GAANNNNTTC 2 cut(s) 96, 218
BanI GGYRCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 107, 135
BceAI ACGGC 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 121, 142
BisI GCNGC 3 cut(s) 26, 121, 124
BlsI GCNGC 3 cut(s) 27, 122, 125
BmiI GGNNCC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 3 cut(s) 178, 233, 268
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 107, 135
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 268
BsiSI CCGG 3 cut(s) 179, 234, 269
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 175
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 2 cut(s) 25, 162
BspANI GGCC 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 2 cut(s) 125, 146
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 46, 253
Bst6I CTCTTC 1 cut(s) 63
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 168, 206
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 2 cut(s) 121, 142
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 107, 135
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 42, 81
BtuMI TCGCGA 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 268
CviAII CATG 1 cut(s) 197
CviJI RGCY 6 cut(s) 56, 74, 97, 120, 126, 230
CviKI_1 RGCY 6 cut(s) 56, 74, 97, 120, 126, 230
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 100, 186
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 26, 121, 124
Fsp4HI GCNGC 3 cut(s) 26, 121, 124
GluI GCNGC 3 cut(s) 26, 121, 124
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 179, 234, 269
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 214
HpaII CCGG 3 cut(s) 179, 234, 269
Hpy188III TCNNGA 2 cut(s) 101, 179
HpyCH4III ACNGT 2 cut(s) 46, 253
HpyCH4V TGCA 3 cut(s) 81, 123, 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 206
Hsp92II CATG 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 117, 192, 247
Lsp1109I GCAGC 2 cut(s) 107, 135
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 162
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 50
MluCI AATT 1 cut(s) 166
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 96, 218
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 2 cut(s) 86, 260
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 3 cut(s) 179, 234, 269
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 168, 206
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 267
NmeAIII GCCGAG 1 cut(s) 183
NruI TCGCGA 1 cut(s) 102
NspI RCATGY 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 63
PdmI GAANNNNTTC 2 cut(s) 96, 218
PfeI GAWTC 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 3 cut(s) 27, 122, 125
PspN4I GGNNCC 1 cut(s) 267
PstI CTGCAG 2 cut(s) 125, 146
PvuII CAGCTG 1 cut(s) 120
RruI TCGCGA 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 86, 260
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 3 cut(s) 26, 121, 124
Sau3AI GATC 1 cut(s) 175
SetI ASST 7 cut(s) 9, 18, 58, 99, 122, 151, 246
SfcI CTRYAG 2 cut(s) 121, 142
SmiMI CAYNNNNRTG 2 cut(s) 86, 260
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 25, 162
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 46, 253
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 2 cut(s) 49, 88
TseI GCWGC 2 cut(s) 120, 123
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 2 cut(s) 49, 88
XceI RCATGY 1 cut(s) 200
XmnI GAANNNNTTC 2 cut(s) 96, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.