pycom17g27950

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0018362
Physical Location & Seq
Reverse (-)
26015279 .. 26016746
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27950.3

Sequence Viewer

Length: 375 bp
ATGGAGGTGACAAAGAGGCCTGTGGGAATGTTCGCAATGGGCTTAGCTCTTCTTCTTTGCTTTGCTGCTGCACAGGATATCGGAAACGGTGGGGCAGCTGCAACATTAACATGGTGCATTGCAAAACCGTCGGCTGATGTTGAAAAGCTTCGGCACAACATTGATTATAGCTGCGGCCAAGCAGGAATAGACTGCAGGCCGATTCAGCCAGGTGGCGGTTGTTTCAGCCCAGAGAATGCCGTCTCACATGCTTCTGTGGCCATGAATCTGTTTTTCAGGGCCACCGGAAAGCACTTTTGGGACTGCCATTTCAATGGCACCGGCTTAGTCGTTTCTCAGAATCCATCTGTTGGCACTTGTGAGTATCTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

125

Amino Acids

13.12

Weight (kDa)

6.38

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 2 cut(s) 174, 216
AcoI YGGCCR 2 cut(s) 175, 258
AfiI CCNNNNNNNGG 2 cut(s) 215, 350
AgsI TTSAA 2 cut(s) 143, 313
AjnI CCWGG 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AluBI AGCT 4 cut(s) 47, 98, 148, 171
AluI AGCT 4 cut(s) 47, 98, 148, 171
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 5 cut(s) 17, 175, 197, 258, 279
ApeKI GCWGC 5 cut(s) 65, 68, 95, 98, 171
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 19
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 5 cut(s) 52, 55, 85, 107, 158
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 6 cut(s) 66, 69, 96, 99, 172, 175
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 6 cut(s) 67, 70, 97, 100, 173, 176
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 350
Bse118I RCCGGY 1 cut(s) 320
Bse3DI GCAATG 2 cut(s) 42, 117
BseBI CCWGG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 215, 350
BseMI GCAATG 2 cut(s) 42, 117
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 5 cut(s) 52, 55, 85, 107, 158
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 5 cut(s) 19, 177, 199, 260, 281
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 285, 321
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 215, 350
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 5 cut(s) 19, 177, 199, 260, 281
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 2 cut(s) 174, 216
BspANI GGCC 5 cut(s) 19, 177, 199, 260, 281
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 42, 117
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 89, 129
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 43, 325, 336
BstMAI GTCTC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 205, 257
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 5 cut(s) 52, 55, 85, 107, 158
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 5 cut(s) 19, 177, 199, 260, 281
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 3 cut(s) 111, 248, 262
DdeI CTNAG 3 cut(s) 43, 325, 336
EaeI YGGCCR 2 cut(s) 175, 258
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 19
Eco32I GATATC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 114, 251, 265
FaiI YATR 4 cut(s) 112, 168, 249, 263
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 110, 247, 261
Fnu4HI GCNGC 6 cut(s) 66, 69, 96, 99, 172, 175
Fsp4HI GCNGC 6 cut(s) 66, 69, 96, 99, 172, 175
GluI GCNGC 6 cut(s) 66, 69, 96, 99, 172, 175
HaeIII GGCC 5 cut(s) 19, 177, 199, 260, 281
HapII CCGG 2 cut(s) 285, 321
Hin1II CATG 3 cut(s) 114, 251, 265
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 3 cut(s) 202, 265, 340
HpaII CCGG 2 cut(s) 285, 321
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 83, 339
Hpy99I CGWCG 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 89, 129
HpyCH4V TGCA 5 cut(s) 71, 101, 117, 122, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 257
HpyF3I CTNAG 3 cut(s) 43, 325, 336
Hsp92II CATG 3 cut(s) 114, 251, 265
LguI GCTCTTC 1 cut(s) 54
Lsp1109I GCAGC 5 cut(s) 52, 55, 85, 107, 158
MaeIII GTNAC 1 cut(s) 7
MboII GAAGA 2 cut(s) 41, 44
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MnlI CCTC 1 cut(s) 9
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 2 cut(s) 109, 312
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 285, 321
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 205, 257
NlaIII CATG 3 cut(s) 114, 251, 265
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 251
PceI AGGCCT 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 202, 265, 340
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 67, 70, 97, 100, 173, 176
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 109, 312
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 6 cut(s) 66, 69, 96, 99, 172, 175
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 9, 49, 100, 150, 173, 214
SfcI CTRYAG 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 109, 312
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 174, 216
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 89, 129
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 202, 265, 340
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 5 cut(s) 65, 68, 95, 98, 171
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 350
XceI RCATGY 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.