Rh3BG309300

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018362
Physical Location & Seq
Forward (+)
31308036 .. 31308687
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG309300.1

Sequence Viewer

Length: 414 bp
ATGACAATGGAGGTGACATGGCGGCCTTTGGCATTGCTCACTATGGGAGTAGCTCTTCTTTCTTGTTTTGCTACTCGCACAGAGTCAAGGAATTCTGTCCCTCAAAGTGATCGAGTAAAGGTATTAGAGAATGAGGAAGCTGCACCCACATGGTGTATTGCCAAGCCTTCTGCAGATGTCGAAAAGCTTCACCACAACATTGACTTCATCTGCGGCCAAACTGGAATAGACTGCAGACCTATTCTGCCCGGTGGTAATTGCTTTGATCCGGACAATGCTGTTTCACATGCTTCAGTTGCAATGAATCTGTTCTACAAGGCCACCGGAAAGAACCCTTGGGACTGCCATTTCAATGGCACCGGCTTAATCATTTATCAGAACCCATCTGTCGGCATTTGCCACTATCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

137

Amino Acids

15.05

Weight (kDa)

5.89

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 50 - 121 2.6e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 2 cut(s) 22, 213
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 4 cut(s) 53, 140, 187, 410
AluI AGCT 4 cut(s) 53, 140, 187, 410
AlwI GGATC 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 3 cut(s) 23, 214, 318
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 2 cut(s) 186, 308
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 2 cut(s) 25, 182
BanI GGYRCC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 391
BcnI CCSGG 1 cut(s) 249
BfmI CTRYAG 2 cut(s) 171, 232
BisI GCNGC 3 cut(s) 23, 141, 214
BlsI GCNGC 3 cut(s) 24, 142, 215
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 2 cut(s) 268, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 32, 306
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 2 cut(s) 32, 306
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 3 cut(s) 25, 216, 320
BshNI GGYRCC 1 cut(s) 356
BsiSI CCGG 4 cut(s) 249, 269, 324, 360
BslFI GGGAC 2 cut(s) 83, 353
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 2 cut(s) 83, 353
BsnI GGCC 3 cut(s) 25, 216, 320
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 109, 265
BspACI CCGC 2 cut(s) 22, 213
BspANI GGCC 3 cut(s) 25, 216, 320
BspEI TCCGGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 358
BspMAI CTGCAG 2 cut(s) 175, 236
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 2 cut(s) 32, 306
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 109, 265
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 60
BstKTI GATC 2 cut(s) 112, 268
BstMBI GATC 2 cut(s) 109, 265
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 171, 232
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 353
BsuRI GGCC 3 cut(s) 25, 216, 320
Cfr10I RCCGGY 1 cut(s) 359
CviAII CATG 3 cut(s) 18, 150, 287
CviJI RGCY 9 cut(s) 25, 53, 140, 166, 187, 216, 320, 363, 410
CviKI_1 RGCY 9 cut(s) 25, 53, 140, 166, 187, 216, 320, 363, 410
DpnI GATC 2 cut(s) 111, 267
DpnII GATC 2 cut(s) 109, 265
DraIII CACNNNGTG 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 3 cut(s) 21, 153, 290
FaiI YATR 4 cut(s) 19, 44, 151, 288
FaqI GGGAC 2 cut(s) 83, 353
FatI CATG 3 cut(s) 17, 149, 286
Fnu4HI GCNGC 3 cut(s) 23, 141, 214
Fsp4HI GCNGC 3 cut(s) 23, 141, 214
GluI GCNGC 3 cut(s) 23, 141, 214
HaeIII GGCC 3 cut(s) 25, 216, 320
HapII CCGG 4 cut(s) 249, 269, 324, 360
Hin1II CATG 3 cut(s) 21, 153, 290
HindIII AAGCTT 2 cut(s) 185, 408
HinfI GANTC 2 cut(s) 83, 304
HpaII CCGG 4 cut(s) 249, 269, 324, 360
HphI GGTGA 2 cut(s) 25, 182
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 143, 173, 234, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92II CATG 3 cut(s) 21, 153, 290
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 109, 265
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 5 cut(s) 207, 262, 282, 337, 373
Lsp1109I GCAGC 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 111, 267
MboI GATC 2 cut(s) 109, 265
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 91, 256
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 3 cut(s) 4, 111, 127
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 2 cut(s) 186, 308
MseI TTAA 2 cut(s) 365, 412
MslI CAYNNNNRTG 2 cut(s) 148, 351
MspI CCGG 4 cut(s) 249, 269, 324, 360
MspR9I CCNGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 109, 265
NlaIII CATG 3 cut(s) 21, 153, 290
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 186, 308
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 24, 142, 215
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 358
PstI CTGCAG 2 cut(s) 175, 236
RseI CAYNNNNRTG 2 cut(s) 148, 351
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 365, 412
SatI GCNGC 3 cut(s) 23, 141, 214
Sau3AI GATC 2 cut(s) 109, 265
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 249
SetI ASST 7 cut(s) 15, 55, 123, 142, 189, 241, 412
SfcI CTRYAG 2 cut(s) 171, 232
SmiMI CAYNNNNRTG 2 cut(s) 148, 351
Sse9I AATT 2 cut(s) 91, 256
SsiI CCGC 2 cut(s) 22, 213
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 335
TaqI TCGA 2 cut(s) 112, 180
TasI AATT 2 cut(s) 91, 256
TauI GCSGC 2 cut(s) 25, 216
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 365, 412
Tru9I TTAA 2 cut(s) 365, 412
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 196, 317
XapI RAATTY 1 cut(s) 91
XceI RCATGY 1 cut(s) 290
XmnI GAANNNNTTC 2 cut(s) 186, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.