MD17G1283500.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0018362
Physical Location & Seq
Reverse (-)
34255918 .. 34257157
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1283500.v1.1.491

Sequence Viewer

Length: 243 bp
ATGTTCGCAACGGGCTTAGCTCTTCTTCTTTGCTTTGCTGCTGCACAGGATATCGGAAACGGTGGGGCAGCTGCAACATTAACATGGTGCATTGCAAAACCGTCGGCAGATGTTGAAAAGCTTCGGCACAACATTGATTATAGCTGCGGCCAAGCAGGAATAGACTGCAGGCCGATTCAGCCAGGTGGCGGTTGTTTCAGCCCAGAGAATGCCGTCTCACATGCTTCTATTGCCATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

81

Amino Acids

8.18

Weight (kDa)

5.37

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 28 - 80 1.9e-12 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 147, 189
AcoI YGGCCR 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 4 cut(s) 20, 71, 121, 144
AluI AGCT 4 cut(s) 20, 71, 121, 144
Alw26I GTCTC 1 cut(s) 220
AoxI GGCC 2 cut(s) 148, 170
ApeKI GCWGC 5 cut(s) 38, 41, 68, 71, 144
Asp700I GAANNNNTTC 1 cut(s) 120
BbvI GCAGC 5 cut(s) 25, 28, 58, 80, 131
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 6 cut(s) 39, 42, 69, 72, 145, 148
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 6 cut(s) 40, 43, 70, 73, 146, 149
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 90
BseXI GCAGC 5 cut(s) 25, 28, 58, 80, 131
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 150, 172
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 220
BsmBI CGTCTC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 150, 172
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 147, 189
BspANI GGCC 2 cut(s) 150, 172
BspMAI CTGCAG 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 62, 102
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 178, 230
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 25, 28, 58, 80, 131
BsuRI GGCC 2 cut(s) 150, 172
Cac8I GCNNGC 1 cut(s) 170
CviAII CATG 3 cut(s) 84, 221, 235
CviJI RGCY 9 cut(s) 15, 20, 71, 121, 144, 150, 172, 181, 201
CviKI_1 RGCY 9 cut(s) 15, 20, 71, 121, 144, 150, 172, 181, 201
DdeI CTNAG 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 181
EcoRV GATATC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 3 cut(s) 87, 224, 238
FaiI YATR 4 cut(s) 85, 141, 222, 236
FatI CATG 3 cut(s) 83, 220, 234
Fnu4HI GCNGC 6 cut(s) 39, 42, 69, 72, 145, 148
Fsp4HI GCNGC 6 cut(s) 39, 42, 69, 72, 145, 148
GluI GCNGC 6 cut(s) 39, 42, 69, 72, 145, 148
HaeIII GGCC 2 cut(s) 150, 172
Hin1II CATG 3 cut(s) 87, 224, 238
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 62, 102
HpyCH4V TGCA 5 cut(s) 44, 74, 90, 95, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 230
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 3 cut(s) 87, 224, 238
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 32, 141, 154, 168, 195, 216
Lsp1109I GCAGC 5 cut(s) 25, 28, 58, 80, 131
MboII GAAGA 2 cut(s) 14, 17
MluCI AATT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 80, 241
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 178, 230
NlaIII CATG 3 cut(s) 87, 224, 238
NspI RCATGY 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 6 cut(s) 40, 43, 70, 73, 146, 149
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PstI CTGCAG 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 80, 241
SatI GCNGC 6 cut(s) 39, 42, 69, 72, 145, 148
ScrFI CCNGG 1 cut(s) 183
SetI ASST 5 cut(s) 22, 73, 123, 146, 187
SfcI CTRYAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 238
SsiI CCGC 2 cut(s) 147, 189
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 62, 102
TasI AATT 1 cut(s) 238
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 80, 241
Tru9I TTAA 2 cut(s) 80, 241
TseI GCWGC 5 cut(s) 38, 41, 68, 71, 144
XceI RCATGY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.