Rh3DG304000

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018362
Physical Location & Seq
Forward (+)
32148957 .. 32149606
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG304000.1

Sequence Viewer

Length: 372 bp
ATGGAGGTGACACGACGGCCTTTGGCATTGCTCACTATGGGAGTAGCTCTTCTTTCTTGTTTTGCTACTCGCACATGTGTATTAGAGAACGAGGAAGCTGCACCTACATGGTGTATTGCCAAGCCTTCTGCAGATGTCGAAAAGCTTCACCACAACATTGACTTCAGCTGCAGCCAAACTGGAATAGACTGCAGACCTATTCTGCCCGGTGGTAATTGCTTTGATCCGGACAATGCTGTTTCACAAGCTTCAGTTGCAATGAATCTGTTCTACAAGGCCACCAGAAAGAACCCTTGGGACTGCCATTTCAATGGCACCGGCTTAATCATTTATCAGAACCCATCTGTCGGCATTTGCCACCATCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

123

Amino Acids

13.48

Weight (kDa)

6.16

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 36 - 107 4.5e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 226
AclWI GGATC 1 cut(s) 218
AcuI CTGAAG 2 cut(s) 148, 234
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AluBI AGCT 6 cut(s) 47, 98, 145, 168, 248, 368
AluI AGCT 6 cut(s) 47, 98, 145, 168, 248, 368
AlwI GGATC 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 17, 276
ApeKI GCWGC 3 cut(s) 98, 168, 171
Asp700I GAANNNNTTC 2 cut(s) 144, 266
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 19, 140
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 85, 155, 183
BccI CCATC 2 cut(s) 349, 369
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcnI CCSGG 1 cut(s) 207
BfmI CTRYAG 3 cut(s) 129, 169, 190
BisI GCNGC 3 cut(s) 99, 169, 172
BlsI GCNGC 3 cut(s) 100, 170, 173
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 26, 264
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 26, 264
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 85, 155, 183
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 19, 278
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 3 cut(s) 207, 227, 318
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 2 cut(s) 19, 278
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 2 cut(s) 19, 278
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 3 cut(s) 133, 173, 194
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 26, 264
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 54
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 3 cut(s) 129, 169, 190
BstV1I GCAGC 3 cut(s) 85, 155, 183
BstXI CCANNNNNNTGG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 19, 278
Cfr10I RCCGGY 1 cut(s) 317
CviAII CATG 2 cut(s) 75, 108
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 293
Eco57I CTGAAG 2 cut(s) 148, 234
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 78, 111
FaiI YATR 3 cut(s) 38, 76, 109
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 74, 107
Fnu4HI GCNGC 3 cut(s) 99, 169, 172
Fsp4HI GCNGC 3 cut(s) 99, 169, 172
GluI GCNGC 3 cut(s) 99, 169, 172
HaeIII GGCC 2 cut(s) 19, 278
HapII CCGG 3 cut(s) 207, 227, 318
Hin1II CATG 2 cut(s) 78, 111
HindIII AAGCTT 3 cut(s) 143, 246, 366
HinfI GANTC 1 cut(s) 262
HpaII CCGG 3 cut(s) 207, 227, 318
HphI GGTGA 2 cut(s) 19, 140
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 101, 131, 171, 192, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 78, 111
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 165, 220, 240, 295, 331
Lsp1109I GCAGC 3 cut(s) 85, 155, 183
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 41
MluCI AATT 1 cut(s) 214
MnlI CCTC 1 cut(s) 85
MroI TCCGGA 1 cut(s) 226
MroXI GAANNNNTTC 2 cut(s) 144, 266
MseI TTAA 2 cut(s) 323, 370
MslI CAYNNNNRTG 2 cut(s) 106, 309
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 3 cut(s) 207, 227, 318
MspR9I CCNGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 207
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 78, 111
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 144, 266
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 100, 170, 173
PscI ACATGT 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 316
PstI CTGCAG 3 cut(s) 133, 173, 194
PvuII CAGCTG 1 cut(s) 168
RseI CAYNNNNRTG 2 cut(s) 106, 309
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 323, 370
SatI GCNGC 3 cut(s) 99, 169, 172
Sau3AI GATC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 207
SetI ASST 9 cut(s) 9, 49, 100, 106, 147, 170, 199, 250, 370
SfcI CTRYAG 3 cut(s) 129, 169, 190
SmiMI CAYNNNNRTG 2 cut(s) 106, 309
Sse9I AATT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 293
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 214
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 323, 370
Tru9I TTAA 2 cut(s) 323, 370
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 98, 168, 171
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 275
XceI RCATGY 1 cut(s) 78
XmnI GAANNNNTTC 2 cut(s) 144, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.