RLG00000023093

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018362
Physical Location & Seq
Reverse (-)
18000874 .. 18001519
646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023093

Sequence Viewer

Length: 408 bp
ATGGAGGTGACATGGCGGCCTTTGGCATTGCTCACCATGGGAGTAGCTCTTCTTTCTTGTTTTGGTACTCGCACAGAGTCAAGGAATTCTGTCCCTCGAAGTGATCAAGTAAAGGTATTAGAGAATGAGGAAGCTGCACCTACATGGTGTATTGCCAAGCCTTCTGCAGATGTCGAAAAGCTTCACCACAACATTGACTTCAGCTGCGGCCAAACTGGAATAGACTGCAGACCTATTCTGCCTGGTGGTAATTGCTTTGATCCGGACAATGCTGTTTCACATGCTTCAGTTGCAATGAATCTGTTCTACAAGGCCACCGGAAAGAACCCTTGGGACTACCATTTCAATGGCACCGGCTTAATCATTTATCAGAACCCATCTGTCGGCATTTGCCACTATCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

136

Amino Acids

14.84

Weight (kDa)

5.89

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 48 - 119 1e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 2 cut(s) 16, 207
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 2 cut(s) 184, 270
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 346
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
AluBI AGCT 5 cut(s) 47, 134, 181, 204, 404
AluI AGCT 5 cut(s) 47, 134, 181, 204, 404
AlwI GGATC 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 3 cut(s) 17, 208, 312
ApeKI GCWGC 2 cut(s) 134, 204
ApoI RAATTY 1 cut(s) 85
Asp700I GAANNNNTTC 2 cut(s) 180, 302
AsuHPI GGTGA 3 cut(s) 19, 25, 176
BanI GGYRCC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 121, 191
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 103
BfmI CTRYAG 2 cut(s) 165, 226
BisI GCNGC 4 cut(s) 17, 135, 205, 208
BlsI GCNGC 4 cut(s) 18, 136, 206, 209
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 36, 329
BsaWI WCCGGW 2 cut(s) 262, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 26, 300
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 36, 329
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 2 cut(s) 26, 300
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 121, 191
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 3 cut(s) 19, 210, 314
BshNI GGYRCC 1 cut(s) 350
BsiSI CCGG 3 cut(s) 263, 318, 354
BslFI GGGAC 2 cut(s) 77, 347
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 77, 347
BsnI GGCC 3 cut(s) 19, 210, 314
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 103, 259
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 2 cut(s) 16, 207
BspANI GGCC 3 cut(s) 19, 210, 314
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 352
BspMAI CTGCAG 2 cut(s) 169, 230
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 26, 300
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 36, 329
BssMI GATC 2 cut(s) 103, 259
BssT1I CCWWGG 2 cut(s) 36, 329
Bst2UI CCWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 36
BstKTI GATC 2 cut(s) 106, 262
BstMBI GATC 2 cut(s) 103, 259
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 2 cut(s) 165, 226
BstV1I GCAGC 2 cut(s) 121, 191
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 3 cut(s) 19, 210, 314
BtgI CCRYGG 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 353
Csp6I GTAC 1 cut(s) 66
CviAII CATG 4 cut(s) 12, 37, 144, 281
CviQI GTAC 1 cut(s) 66
DpnI GATC 2 cut(s) 105, 261
DpnII GATC 2 cut(s) 103, 259
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 36, 329
Eco57I CTGAAG 2 cut(s) 184, 270
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 36, 329
ErhI CCWWGG 2 cut(s) 36, 329
FaeI CATG 4 cut(s) 15, 40, 147, 284
FaiI YATR 4 cut(s) 13, 38, 145, 282
FaqI GGGAC 2 cut(s) 77, 347
FatI CATG 4 cut(s) 11, 36, 143, 280
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 17, 135, 205, 208
Fsp4HI GCNGC 4 cut(s) 17, 135, 205, 208
GluI GCNGC 4 cut(s) 17, 135, 205, 208
HaeIII GGCC 3 cut(s) 19, 210, 314
HapII CCGG 3 cut(s) 263, 318, 354
Hin1II CATG 4 cut(s) 15, 40, 147, 284
HindIII AAGCTT 2 cut(s) 179, 402
HinfI GANTC 2 cut(s) 77, 298
HpaII CCGG 3 cut(s) 263, 318, 354
HphI GGTGA 3 cut(s) 19, 25, 176
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 137, 167, 228, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Hsp92II CATG 4 cut(s) 15, 40, 147, 284
Kpn2I TCCGGA 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 259
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 201, 228, 255, 276, 331, 367
Lsp1109I GCAGC 2 cut(s) 121, 191
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 105, 261
MboI GATC 2 cut(s) 103, 259
MboII GAAGA 1 cut(s) 41
MluCI AATT 2 cut(s) 85, 250
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 2 cut(s) 105, 121
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 2 cut(s) 180, 302
MseI TTAA 2 cut(s) 359, 406
MslI CAYNNNNRTG 2 cut(s) 142, 345
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 3 cut(s) 263, 318, 354
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 36
NdeII GATC 2 cut(s) 103, 259
NlaIII CATG 4 cut(s) 15, 40, 147, 284
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 180, 302
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 4 cut(s) 18, 136, 206, 209
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 352
PstI CTGCAG 2 cut(s) 169, 230
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 142, 345
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 359, 406
SatI GCNGC 4 cut(s) 17, 135, 205, 208
Sau3AI GATC 2 cut(s) 103, 259
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 243
SetI ASST 9 cut(s) 9, 49, 117, 136, 142, 183, 206, 235, 406
SfcI CTRYAG 2 cut(s) 165, 226
SmiMI CAYNNNNRTG 2 cut(s) 142, 345
Sse9I AATT 2 cut(s) 85, 250
SsiI CCGC 2 cut(s) 16, 207
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 2 cut(s) 36, 329
TaqI TCGA 2 cut(s) 97, 174
TasI AATT 2 cut(s) 85, 250
TauI GCSGC 2 cut(s) 19, 210
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 359, 406
Tru9I TTAA 2 cut(s) 359, 406
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 134, 204
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 311
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 284
XmnI GAANNNNTTC 2 cut(s) 180, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.