Rroxscaffold_6G00395980

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018362
Physical Location & Seq
Reverse (-)
17210440 .. 17211759
1320 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00395980.1

Sequence Viewer

Length: 411 bp
ATGAAGGTGACACGGCGGCCTTTGGCATTGCTCACTATGGGAGTAGCTCTTCTTTCTTGTTTTGCTACTCGCACATGTTATTTATTTATTTTTTTTCTCATGAATGGAAATAAAAAAGAGAATTTGACTCCTGAAGCTGCACCTACATGGTGTATTGCCAAGCCTTCTGCAGATGTCGAAAAGCTTCACCACAACATTGACTTCAGCTGCGGCCAAACTGGAATAGACTGCAGACCTATTATCCCCGGTGGTAATTGCTTTGATCCGGACAATGCTGTTTCACATGCTTCAGTTGCAATGAATCTGTTTTACAAGGCCACCGGAAAGAACCCTTGGGACTGCCATTTCAATGGCACCGGCTTAATCATTTATCAGAACCCATCTGTCGCCATTTGCCACTATCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

8.13

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 49 - 120 2e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26451
malus_domestica MD17G1283500.v1.1
pyrus_communis pycom17g27950
rosa_laevigata RLG00000023093
rosa_roxburghii Rroxscaffold_6G00395980
rosa_rugosa Rorug03G0224000 Rorug03G0224000
rosa_samantha Rh3BG309300 Rh3CG307600 Rh3DG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 2 cut(s) 16, 210
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 3 cut(s) 153, 187, 273
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AluBI AGCT 5 cut(s) 47, 137, 184, 207, 407
AluI AGCT 5 cut(s) 47, 137, 184, 207, 407
AlwI GGATC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 3 cut(s) 17, 211, 315
ApeKI GCWGC 2 cut(s) 137, 207
ApoI RAATTY 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 19, 179
BanI GGYRCC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 124, 194
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 246
BfmI CTRYAG 2 cut(s) 168, 229
BisI GCNGC 4 cut(s) 17, 138, 208, 211
BlsI GCNGC 4 cut(s) 18, 139, 209, 212
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 244, 332
BsaWI WCCGGW 2 cut(s) 265, 320
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 26, 303
BseAI TCCGGA 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 244, 332
BseMI GCAATG 2 cut(s) 26, 303
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 124, 194
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 3 cut(s) 19, 213, 317
BshNI GGYRCC 1 cut(s) 353
BsiSI CCGG 4 cut(s) 246, 266, 321, 357
BslFI GGGAC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 19, 213, 317
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 2 cut(s) 16, 210
BspANI GGCC 3 cut(s) 19, 213, 317
BspEI TCCGGA 1 cut(s) 265
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 355
BspMAI CTGCAG 2 cut(s) 172, 233
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 2 cut(s) 26, 303
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 244, 332
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 54
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 2 cut(s) 78, 287
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 2 cut(s) 168, 229
BstV1I GCAGC 2 cut(s) 124, 194
BstXI CCANNNNNNTGG 1 cut(s) 350
BsuRI GGCC 3 cut(s) 19, 213, 317
CciI TCATGA 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 356
CviAII CATG 4 cut(s) 75, 100, 147, 284
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 332
Eco57I CTGAAG 3 cut(s) 153, 187, 273
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 4 cut(s) 78, 103, 150, 287
FaiI YATR 5 cut(s) 38, 76, 101, 148, 285
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 74, 99, 146, 283
Fnu4HI GCNGC 4 cut(s) 17, 138, 208, 211
Fsp4HI GCNGC 4 cut(s) 17, 138, 208, 211
GluI GCNGC 4 cut(s) 17, 138, 208, 211
HaeIII GGCC 3 cut(s) 19, 213, 317
HapII CCGG 4 cut(s) 246, 266, 321, 357
Hin1II CATG 4 cut(s) 78, 103, 150, 287
HindIII AAGCTT 2 cut(s) 182, 405
HinfI GANTC 2 cut(s) 127, 301
HpaII CCGG 4 cut(s) 246, 266, 321, 357
HphI GGTGA 2 cut(s) 19, 179
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 3 cut(s) 100, 131, 266
HpyAV CCTTC 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 140, 170, 231, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92II CATG 4 cut(s) 78, 103, 150, 287
Kpn2I TCCGGA 1 cut(s) 265
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 144, 204, 259, 279, 334, 370
Lsp1109I GCAGC 2 cut(s) 124, 194
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 41
MluCI AATT 2 cut(s) 121, 253
MlyI GAGTC 1 cut(s) 121
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 362, 409
MslI CAYNNNNRTG 2 cut(s) 145, 348
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 4 cut(s) 246, 266, 321, 357
MspR9I CCNGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 246
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 78, 103, 150, 287
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 2 cut(s) 78, 287
PagI TCATGA 1 cut(s) 99
PciI ACATGT 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 4 cut(s) 18, 139, 209, 212
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PscI ACATGT 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 355
PstI CTGCAG 2 cut(s) 172, 233
PvuII CAGCTG 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 145, 348
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 362, 409
SatI GCNGC 4 cut(s) 17, 138, 208, 211
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 246
SetI ASST 8 cut(s) 9, 49, 139, 145, 186, 209, 238, 409
SfcI CTRYAG 2 cut(s) 168, 229
SmiMI CAYNNNNRTG 2 cut(s) 145, 348
Sse9I AATT 2 cut(s) 121, 253
SsiI CCGC 2 cut(s) 16, 210
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 121, 253
TauI GCSGC 2 cut(s) 19, 213
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 362, 409
Tru9I TTAA 2 cut(s) 362, 409
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 137, 207
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 17, 116, 314
XapI RAATTY 1 cut(s) 121
XceI RCATGY 2 cut(s) 78, 287
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.