FvH4_1g27470

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017973
Physical Location & Seq
Reverse (-)
19150676 .. 19151365
690 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27470.t1

Sequence Viewer

Length: 690 bp
ATGGACCTAATACAGTATACAAGAAAAAGAAGAAGAAACCCCACTGAGATGATCAGAAAACCCGCTGAGATCAAAGACTTAACCTCTGACCTTATGTTTGCAATCTTTGTAAAACTGCCCATCAAGTATCTTTTGCGGTTAACAGCAGTTTGCAAATCTTACAGACAGCTAATCAGAAGCCATGAGTTTAAAAAGTTTCATCATGCCGAGATTAGCATAAAAGATGCTCATGAGTATCTACTTGTTCACAATAGAATCGGAATTGAACAATGGGGCTTGTCCATTTATTCTGCTAGAACATTTAGGTATGATGAGAATTCAGAGCTTCCTAGGTACATAGATGTTCCCATGCGGTGCGTTGGCATACCCTTGAACTCTCTTGGATTCACTGTTTATGGTTCTTGCAATGGATTGCTTTGCATTTCTTTACGTTCTCTTGATGTGGACGATCCTATATTTCTGTACAATCCATCACTTAGAAAATTCAAGCAACTGCCTCAAAGTGACTTCAAGGTTCCAGAAGACACCAGTGGTCACACCACCATAATTCGTCGGGAAGATGTCGTTACTCTCGGGTTTGGGTACCATTCTGGGGAGGATGACTATCAGGTTGTGAGGTTTGTGTACCCCAGACGAAGTATCTTTCATGTCGAGATTTACAGTCTCAAGTTGTTTCTTGGACAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

230

Amino Acids

26.92

Weight (kDa)

9.2

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 65 3.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017973)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27470
rosa_chinensis RchiOBHm_Chr3g0488541
rosa_laevigata RLG00000022945
rosa_multiflora Rmu_co8412829.1_g000001
rosa_roxburghii Rroxscaffold_6G00394190
rosa_rugosa Rorug03G0239100
rosa_samantha Rh3AG287900 Rh3BG324800 Rh3CG322000 Rh3DG320900
rosa_wichuraiana Rw3G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 582
AccI GTMKAC 1 cut(s) 17
AciI CCGC 3 cut(s) 63, 136, 352
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 316, 482
AfaI GTAC 4 cut(s) 335, 464, 584, 626
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 4 cut(s) 266, 373, 487, 511
AluBI AGCT 2 cut(s) 169, 325
AluI AGCT 2 cut(s) 169, 325
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 572
ApoI RAATTY 2 cut(s) 316, 482
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp718I GGTACC 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 329
BanI GGYRCC 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 528
BccI CCATC 2 cut(s) 128, 478
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 294, 330, 688
BlnI CCTAGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 516, 584
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 603
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 36, 57
BseNI ACTGG 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 3 cut(s) 51, 69, 448
BspACI CCGC 3 cut(s) 63, 136, 352
BspCNI CTCAG 2 cut(s) 37, 58
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 516, 584
BspPI GGATC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 3 cut(s) 51, 69, 448
BssNAI GTATAC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 329
Bst1107I GTATAC 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 15, 391, 662
BstAUI TGTACA 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 45, 66, 476
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 3 cut(s) 54, 72, 451
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 3 cut(s) 51, 69, 448
BstV2I GAAGAC 1 cut(s) 528
BstZ17I GTATAC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 3 cut(s) 42, 387, 535
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 334, 463, 583, 625
CviAII CATG 5 cut(s) 182, 203, 230, 349, 647
CviJI RGCY 4 cut(s) 169, 180, 276, 325
CviKI_1 RGCY 4 cut(s) 169, 180, 276, 325
CviQI GTAC 4 cut(s) 334, 463, 583, 625
DdeI CTNAG 3 cut(s) 45, 66, 476
DpnI GATC 3 cut(s) 53, 71, 450
DpnII GATC 3 cut(s) 51, 69, 448
DraI TTTAAA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 5 cut(s) 185, 206, 233, 352, 650
FatI CATG 5 cut(s) 181, 202, 229, 348, 646
FauI CCCGC 1 cut(s) 70
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 17
FokI GGATG 1 cut(s) 611
FspBI CTAG 3 cut(s) 294, 330, 688
Hin1II CATG 5 cut(s) 185, 206, 233, 352, 650
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 2 cut(s) 255, 384
HpaI GTTAAC 1 cut(s) 141
Hpy166II GTNNAC 5 cut(s) 18, 141, 247, 445, 625
Hpy188I TCNGA 5 cut(s) 56, 88, 176, 260, 322
Hpy188III TCNNGA 5 cut(s) 230, 437, 518, 554, 652
Hpy8I GTNNAC 5 cut(s) 18, 141, 247, 445, 625
Hpy99I CGWCG 1 cut(s) 555
HpyCH4III ACNGT 3 cut(s) 15, 391, 662
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 4 cut(s) 101, 153, 405, 420
HpyF3I CTNAG 3 cut(s) 45, 66, 476
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 185, 206, 233, 352, 650
KpnI GGTACC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 51, 69, 448
LpnPI CCDG 5 cut(s) 531, 541, 576, 593, 643
LweI GCATC 1 cut(s) 214
MaeI CTAG 3 cut(s) 294, 330, 688
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 3 cut(s) 503, 533, 565
MalI GATC 3 cut(s) 53, 71, 450
MboI GATC 3 cut(s) 51, 69, 448
MboII GAAGA 4 cut(s) 42, 45, 533, 569
MluCI AATT 4 cut(s) 261, 316, 482, 546
MnlI CCTC 4 cut(s) 94, 507, 589, 609
MseI TTAA 3 cut(s) 80, 140, 189
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 65
NdeII GATC 3 cut(s) 51, 69, 448
NlaIII CATG 5 cut(s) 185, 206, 233, 352, 650
NlaIV GGNNCC 2 cut(s) 516, 584
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 503, 533
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 255, 384
PspN4I GGNNCC 2 cut(s) 516, 584
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 4 cut(s) 335, 464, 584, 626
RsaNI GTAC 4 cut(s) 334, 463, 583, 625
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 80, 140, 189
Sau3AI GATC 3 cut(s) 51, 69, 448
Sau96I GGNCC 1 cut(s) 4
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 4 cut(s) 261, 316, 482, 546
SsiI CCGC 3 cut(s) 63, 136, 352
SspMI CTAG 3 cut(s) 294, 330, 688
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 3 cut(s) 15, 391, 662
TaiI ACGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 651
TasI AATT 4 cut(s) 261, 316, 482, 546
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 255, 384
Tru1I TTAA 3 cut(s) 80, 140, 189
Tru9I TTAA 3 cut(s) 80, 140, 189
TscAI CASTG 3 cut(s) 49, 394, 535
TseFI GTSAC 2 cut(s) 503, 533
Tsp45I GTSAC 2 cut(s) 503, 533
TspDTI ATGAA 2 cut(s) 188, 635
TspRI CASTG 3 cut(s) 49, 394, 535
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 316, 482
XmaJI CCTAGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 3 cut(s) 294, 330, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.