Rmu_co8412829.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8412829.1
OG0017973
Physical Location & Seq
Forward (+)
7 .. 915
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8412829.1_g000001.1.cds

Sequence Viewer

Length: 909 bp
atgcagatgcagctccatgaccttcctctgtacgaatatggtttcactgtttatggttcttgcaatggattgctttgcatctctttattctctctggacttggaccctcctttatatctgtataatccatcactcagaaaattcaagcaacttcctcgaagtgaatttgagcttcctcaaggcacctccattacttctcagatagccacaagtttagttactctcggctttgggttccattctgggatggatgactatcaggttgtgaggtttgtacaccccaatacaagtatcttttatgctgaggtttacagtctcaagttgaattcttggacaccagtagagaatgttgtagatccccgtgaggttgatggttggtttatggaaggatgtacatgcttggatggagttatatattggcatttaatgcagcgtcctaacatgtccctcgtttcttttaatatgcacacttcagttcttggaaagaggacgcttccttatcagctgcaaccggtgatgcgtccaatttgtttgcaagtgttgcatccagagtgtctgcgagcgctgcatgaaaatggtgtgcaagtgtcaaagaaatcactctgtttgttccaagtaatacagcgaggctgccatcactactgtgacatatgggttttgaaagaggatactgaggaaaaaatcggcaggattcgtcttccagcacatgcatctatagcatggccattgggatttagcacaaatggcaatgttgcttatatggttatcactgaggatcaagacttacccctgttggttcaatatgttcctctgctgaaccgcattcagactgttataactcaaataagtcacagaccctggtacgttgatgcttatagagagagtctggttctacttgatgaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

302

Amino Acids

34.75

Weight (kDa)

5.86

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017973)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27470
rosa_chinensis RchiOBHm_Chr3g0488541
rosa_laevigata RLG00000022945
rosa_multiflora Rmu_co8412829.1_g000001
rosa_roxburghii Rroxscaffold_6G00394190
rosa_rugosa Rorug03G0239100
rosa_samantha Rh3AG287900 Rh3BG324800 Rh3CG322000 Rh3DG320900
rosa_wichuraiana Rw3G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 820
AclWI GGATC 2 cut(s) 350, 783
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 3 cut(s) 140, 164, 325
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 4 cut(s) 32, 276, 394, 863
AfeI AGCGCT 1 cut(s) 564
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 145, 325, 661, 800
AjnI CCWGG 1 cut(s) 857
AleI CACNNNNGTG 1 cut(s) 642
AluBI AGCT 3 cut(s) 13, 172, 505
AluI AGCT 3 cut(s) 13, 172, 505
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 2 cut(s) 350, 783
AlwNI CAGNNNCTG 1 cut(s) 858
Aor51HI AGCGCT 1 cut(s) 564
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 5 cut(s) 10, 430, 505, 565, 630
ApoI RAATTY 3 cut(s) 140, 164, 325
AsiGI ACCGGT 1 cut(s) 511
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 724
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 5 cut(s) 22, 442, 492, 552, 617
BccI CCATC 5 cut(s) 136, 241, 365, 398, 642
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 1 cut(s) 859
BciVI GTATCC 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 566
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 5 cut(s) 11, 431, 506, 566, 631
BlsI GCNGC 5 cut(s) 12, 432, 507, 567, 632
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 105, 184, 236
BmrFI CCNGG 1 cut(s) 859
BmsI GCATC 5 cut(s) 87, 507, 553, 719, 859
BpiI GAAGAC 1 cut(s) 689
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 2 cut(s) 162, 302
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 857
BsaWI WCCGGW 1 cut(s) 511
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 2 cut(s) 70, 754
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 1 cut(s) 857
BseGI GGATG 5 cut(s) 252, 256, 395, 409, 544
BseJI GATNNNNATC 1 cut(s) 255
BseMI GCAATG 2 cut(s) 70, 754
BseMII CTCAG 5 cut(s) 148, 212, 294, 663, 762
BseNI ACTGG 1 cut(s) 338
BseXI GCAGC 5 cut(s) 22, 442, 492, 552, 617
BshFI GGCC 1 cut(s) 724
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 511
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 1 cut(s) 724
Bsp1407I TGTACA 2 cut(s) 274, 392
Bsp143I GATC 2 cut(s) 355, 775
BspACI CCGC 1 cut(s) 820
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 5 cut(s) 147, 211, 295, 664, 763
BspLI GGNNCC 3 cut(s) 105, 184, 236
BspPI GGATC 2 cut(s) 350, 783
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 70, 754
BsrFI RCCGGY 1 cut(s) 511
BsrGI TGTACA 2 cut(s) 274, 392
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 1 cut(s) 857
BssMI GATC 2 cut(s) 355, 775
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 4 cut(s) 49, 314, 644, 832
BstAPI GCANNNNNTGC 2 cut(s) 427, 541
BstAUI TGTACA 2 cut(s) 274, 392
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 5 cut(s) 134, 198, 303, 672, 771
BstF5I GGATG 5 cut(s) 252, 256, 395, 409, 544
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 2 cut(s) 358, 778
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 2 cut(s) 355, 775
BstMWI GCNNNNNNNGC 6 cut(s) 10, 427, 541, 565, 716, 744
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 3 cut(s) 399, 445, 710
BstSCI CCNGG 1 cut(s) 857
BstSFI CTRYAG 1 cut(s) 714
BstV1I GCAGC 5 cut(s) 22, 442, 492, 552, 617
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 1 cut(s) 724
BtsCI GGATG 5 cut(s) 252, 256, 395, 409, 544
BtsIMutI CAGTG 2 cut(s) 45, 768
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 858
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 3 cut(s) 422, 499, 509
Csp6I GTAC 4 cut(s) 31, 275, 393, 862
CspAI ACCGGT 1 cut(s) 511
CviAII CATG 6 cut(s) 17, 396, 442, 569, 707, 720
CviJI RGCY 7 cut(s) 13, 172, 206, 228, 505, 630, 724
CviKI_1 RGCY 7 cut(s) 13, 172, 206, 228, 505, 630, 724
CviQI GTAC 4 cut(s) 31, 275, 393, 862
DdeI CTNAG 5 cut(s) 134, 198, 303, 672, 771
DpnI GATC 2 cut(s) 357, 777
DpnII GATC 2 cut(s) 355, 775
EaeI YGGCCR 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 857
EcoT22I ATGCAT 1 cut(s) 712
FaeI CATG 6 cut(s) 20, 399, 445, 572, 710, 723
FaqI GGGAC 1 cut(s) 430
FatI CATG 6 cut(s) 16, 395, 441, 568, 706, 719
FauNDI CATATG 1 cut(s) 650
Fnu4HI GCNGC 5 cut(s) 11, 431, 506, 566, 631
FokI GGATG 5 cut(s) 259, 263, 402, 416, 531
Fsp4HI GCNGC 5 cut(s) 11, 431, 506, 566, 631
GlaI GCGC 1 cut(s) 564
GluI GCNGC 5 cut(s) 11, 431, 506, 566, 631
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 512
HgaI GACGC 3 cut(s) 422, 499, 509
HhaI GCGC 1 cut(s) 565
Hin1II CATG 6 cut(s) 20, 399, 445, 572, 710, 723
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HinfI GANTC 2 cut(s) 691, 883
HpaII CCGG 1 cut(s) 512
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 277, 310
Hpy188I TCNGA 4 cut(s) 137, 201, 828, 908
Hpy188III TCNNGA 3 cut(s) 95, 548, 779
Hpy8I GTNNAC 2 cut(s) 277, 310
HpyAV CCTTC 2 cut(s) 32, 380
HpyCH4III ACNGT 4 cut(s) 49, 314, 644, 832
HpyCH4IV ACGT 1 cut(s) 864
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 427, 541, 565, 716, 744
HpyF3I CTNAG 5 cut(s) 134, 198, 303, 672, 771
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 6 cut(s) 20, 399, 445, 572, 710, 723
HspAI GCGC 1 cut(s) 563
Kzo9I GATC 2 cut(s) 355, 775
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 5 cut(s) 22, 442, 492, 552, 617
LweI GCATC 5 cut(s) 87, 507, 553, 719, 859
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 3 cut(s) 217, 644, 848
MalI GATC 2 cut(s) 357, 777
MboI GATC 2 cut(s) 355, 775
MboII GAAGA 1 cut(s) 689
MflI RGATCY 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 724
MluCI AATT 4 cut(s) 140, 164, 325, 525
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 1 cut(s) 892
Mox20I TGGCCA 1 cut(s) 724
Mph1103I ATGCAT 1 cut(s) 712
MscI TGGCCA 1 cut(s) 724
MseI TTAA 2 cut(s) 425, 459
MslI CAYNNNNRTG 2 cut(s) 573, 642
Msp20I TGGCCA 1 cut(s) 724
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 1 cut(s) 859
MwoI GCNNNNNNNGC 6 cut(s) 10, 427, 541, 565, 716, 744
NdeI CATATG 1 cut(s) 650
NdeII GATC 2 cut(s) 355, 775
NlaIII CATG 6 cut(s) 20, 399, 445, 572, 710, 723
NlaIV GGNNCC 3 cut(s) 105, 184, 236
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 644, 848
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 3 cut(s) 399, 445, 710
OliI CACNNNNGTG 1 cut(s) 642
PciI ACATGT 1 cut(s) 441
PctI GAATGC 1 cut(s) 822
PfeI GAWTC 1 cut(s) 691
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 5 cut(s) 12, 432, 507, 567, 632
PleI GAGTC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 891
PscI ACATGT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 105, 184, 236
PspPI GGNCC 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 858
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 4 cut(s) 32, 276, 394, 863
RsaNI GTAC 4 cut(s) 31, 275, 393, 862
RseI CAYNNNNRTG 2 cut(s) 573, 642
SaqAI TTAA 2 cut(s) 425, 459
SatI GCNGC 5 cut(s) 11, 431, 506, 566, 631
Sau3AI GATC 2 cut(s) 355, 775
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 1 cut(s) 859
SfaNI GCATC 5 cut(s) 87, 507, 553, 719, 859
SfcI CTRYAG 1 cut(s) 714
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 573, 642
SmlI CTYRAG 2 cut(s) 177, 317
SmoI CTYRAG 2 cut(s) 177, 317
Sse9I AATT 4 cut(s) 140, 164, 325, 525
SsiI CCGC 1 cut(s) 820
StyD4I CCNGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 49, 314, 644, 832
TaiI ACGT 1 cut(s) 867
TaqI TCGA 1 cut(s) 157
TasI AATT 4 cut(s) 140, 164, 325, 525
TatI WGTACW 2 cut(s) 274, 392
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 2 cut(s) 425, 459
Tru9I TTAA 2 cut(s) 425, 459
TscAI CASTG 2 cut(s) 52, 775
TseFI GTSAC 2 cut(s) 644, 848
TseI GCWGC 5 cut(s) 10, 430, 505, 565, 630
Tsp45I GTSAC 2 cut(s) 644, 848
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 2 cut(s) 52, 775
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 3 cut(s) 140, 164, 325
XceI RCATGY 3 cut(s) 399, 445, 710
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.