Rh3AG287900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017973
Physical Location & Seq
Forward (+)
34445074 .. 34446309
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG287900.1

Sequence Viewer

Length: 1236 bp
ATGGTTCCCCTCAAGCAATATAGAAGAAGAAGAAGACCCCCCACTGAGATAAAAGACTTAACCCCTGACATATTGTTTGAAATCTTTGCAAGAGTGCCCATGAAATATCTTTTGCAGTTAACAACAGTTTGCAAATCTTACAAGGCTTTAATTAGGAGCCATGAGTTCAGAAGATTCCATCACGAAAAGAATACCATGAAAATTGCTCCTGATTATCTACTTGTTCGCAATAGAATTGGAGGTCAACAAAGGGGCTTCTCCATTTATTCTGCTAGAACATTTGCCTATGATGAGAATTCAGGGCTTCCTAGATCCATAGATATTCCCATGCAGATGCAGCTCCATGACCTTCCTCTGTACGAATATGGTTTCACTGTTTATGGTTCTTGCAATGGATTGCTTTGCATCTCTTTATTCTCTCTGGACTTGGACTCTCCTTTATATCTGTATAATCCATCACTCAGAAAATTCAAGCAACTTCCTCGAAGTGAATTTGAGCTTCCTCAAGGCACCTCCATTACTTCTCAGATGGCCACAAGTTTAGTTACTCTCGGCTTTGGGTTCCATTCTGGGATGGATGACTATCAGGTTGTGAGGTTTGTACACCCCAATACAAGTATCTTTTATGCTGAGGTTTACAGTCTCAAGTTGAATTCTTGGACACCAGTAGAGAATGTTGTAGATCCCCGTGAGGTTCATGCTTGGTTTATGGAAGGATGTACATGCTTGGATGGAGTTATATATTGGCATTTAATGCAGCGTCCTAACATGTCCCTCGTTTCTTTTAATATGCACACTTCAGTTCTTGGAAAGAGGACGCTTCCTTATCAGTTGCAACCGGTGATGCGTCCAATTTGTTTGCAAGTGTTGCATCCAGAGTGTTTGCGAGCGCTGCATGAAAATAGTGTGCAAGTGTCGAAGAAATCACTCTGTTTGTTCCAAGTAATACAGCGAGGCTGCCATCACTACTGTGACATATGGGTTCTGAAAGAGGATACTGAGGAAAAAATTGGCAGGATTCGTCTTCCACCACATGCATCTATAGCATGGCCATTGGGATTTAGCACAAATGGCAATGTTGCTTATATGGTTATCACTGAGGATCAAGACTTACCCCTGTTGGTTCAATATGTTCCTCTGCTGAACCGCATTCAGACTGTTATAACTCAAATAAGTCACAGACCCTGGTACGTTGATGCTTATAGAGAGAGTCTGGTTCTACTCGATGAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

411

Amino Acids

47.81

Weight (kDa)

8.58

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 58 1.5e-07 F-box domain
FBA_3 PF08268 122 - 266 8.9e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017973)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27470
rosa_chinensis RchiOBHm_Chr3g0488541
rosa_laevigata RLG00000022945
rosa_multiflora Rmu_co8412829.1_g000001
rosa_roxburghii Rroxscaffold_6G00394190
rosa_rugosa Rorug03G0239100
rosa_samantha Rh3AG287900 Rh3BG324800 Rh3CG322000 Rh3DG320900
rosa_wichuraiana Rw3G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 1 cut(s) 1147
AclWI GGATC 3 cut(s) 306, 677, 1110
AcoI YGGCCR 2 cut(s) 531, 1049
AcsI RAATTY 4 cut(s) 295, 467, 491, 652
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 4 cut(s) 359, 603, 721, 1190
AfeI AGCGCT 1 cut(s) 891
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 838
AgsI TTSAA 4 cut(s) 80, 472, 652, 1127
AjnI CCWGG 1 cut(s) 1184
AleI CACNNNNGTG 1 cut(s) 969
AluBI AGCT 2 cut(s) 340, 499
AluI AGCT 2 cut(s) 340, 499
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 3 cut(s) 306, 677, 1110
AlwNI CAGNNNCTG 1 cut(s) 1185
Aor51HI AGCGCT 1 cut(s) 891
AoxI GGCC 2 cut(s) 531, 1049
ApeKI GCWGC 4 cut(s) 337, 757, 892, 957
ApoI RAATTY 4 cut(s) 295, 467, 491, 652
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AsiGI ACCGGT 1 cut(s) 838
AspLEI GCGC 1 cut(s) 892
AsuHPI GGTGA 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 99
BalI TGGCCA 2 cut(s) 533, 1051
BanI GGYRCC 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 40, 1016
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 4 cut(s) 349, 769, 879, 944
BccI CCATC 6 cut(s) 186, 463, 523, 568, 725, 969
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 1186
BciVI GTATCC 1 cut(s) 988
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 2 cut(s) 273, 309
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 1 cut(s) 893
BfuI GTATCC 1 cut(s) 988
BisI GCNGC 4 cut(s) 338, 758, 893, 958
BlsI GCNGC 4 cut(s) 339, 759, 894, 959
Bme1390I CCNGG 1 cut(s) 1186
BmiI GGNNCC 4 cut(s) 6, 158, 511, 563
BmrFI CCNGG 1 cut(s) 1186
BmsI GCATC 6 cut(s) 324, 414, 834, 880, 1046, 1186
BpiI GAAGAC 2 cut(s) 40, 1016
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 489, 629
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 1184
BsaWI WCCGGW 1 cut(s) 838
Bse118I RCCGGY 1 cut(s) 838
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 2 cut(s) 397, 1081
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 1186
BseDI CCNNGG 1 cut(s) 1184
BseGI GGATG 5 cut(s) 579, 583, 722, 736, 871
BseJI GATNNNNATC 1 cut(s) 582
BseMI GCAATG 2 cut(s) 397, 1081
BseMII CTCAG 6 cut(s) 36, 475, 539, 621, 990, 1089
BseNI ACTGG 1 cut(s) 665
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 4 cut(s) 349, 769, 879, 944
BshFI GGCC 2 cut(s) 533, 1051
BshNI GGYRCC 1 cut(s) 509
BshTI ACCGGT 1 cut(s) 838
BsiSI CCGG 1 cut(s) 839
BslFI GGGAC 1 cut(s) 757
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 2 cut(s) 533, 1051
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 2 cut(s) 601, 719
Bsp143I GATC 3 cut(s) 311, 682, 1102
BspACI CCGC 1 cut(s) 1147
BspANI GGCC 2 cut(s) 533, 1051
BspCNI CTCAG 6 cut(s) 37, 474, 538, 622, 991, 1090
BspLI GGNNCC 4 cut(s) 6, 158, 511, 563
BspPI GGATC 3 cut(s) 306, 677, 1110
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 397, 1081
BsrFI RCCGGY 1 cut(s) 838
BsrGI TGTACA 2 cut(s) 601, 719
BsrI ACTGG 1 cut(s) 665
BssAI RCCGGY 1 cut(s) 838
BssECI CCNNGG 1 cut(s) 1184
BssMI GATC 3 cut(s) 311, 682, 1102
Bst2UI CCWGG 1 cut(s) 1186
Bst4CI ACNGT 5 cut(s) 127, 376, 641, 971, 1159
BstAPI GCANNNNNTGC 2 cut(s) 754, 868
BstAUI TGTACA 2 cut(s) 601, 719
BstC8I GCNNGC 1 cut(s) 888
BstDEI CTNAG 6 cut(s) 45, 461, 525, 630, 999, 1098
BstF5I GGATG 5 cut(s) 579, 583, 722, 736, 871
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 3 cut(s) 314, 685, 1105
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 3 cut(s) 311, 682, 1102
BstMWI GCNNNNNNNGC 6 cut(s) 337, 754, 868, 892, 1043, 1071
BstNI CCWGG 1 cut(s) 1186
BstNSI RCATGY 3 cut(s) 726, 772, 1037
BstSCI CCNGG 1 cut(s) 1184
BstSFI CTRYAG 1 cut(s) 1041
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 349, 769, 879, 944
BstV2I GAAGAC 2 cut(s) 40, 1016
BstX2I RGATCY 2 cut(s) 311, 682
BstYI RGATCY 2 cut(s) 311, 682
BsuI GTATCC 1 cut(s) 988
BsuRI GGCC 2 cut(s) 533, 1051
BtsCI GGATG 5 cut(s) 579, 583, 722, 736, 871
BtsIMutI CAGTG 3 cut(s) 42, 372, 1095
Cac8I GCNNGC 1 cut(s) 888
CaiI CAGNNNCTG 1 cut(s) 1185
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 838
CseI GACGC 3 cut(s) 749, 826, 836
Csp6I GTAC 4 cut(s) 358, 602, 720, 1189
CspAI ACCGGT 1 cut(s) 838
CviQI GTAC 4 cut(s) 358, 602, 720, 1189
DdeI CTNAG 6 cut(s) 45, 461, 525, 630, 999, 1098
DpnI GATC 3 cut(s) 313, 684, 1104
DpnII GATC 3 cut(s) 311, 682, 1102
EaeI YGGCCR 2 cut(s) 531, 1049
Eco47III AGCGCT 1 cut(s) 891
Eco57I CTGAAG 1 cut(s) 783
EcoRI GAATTC 2 cut(s) 295, 652
EcoRII CCWGG 1 cut(s) 1184
EcoT22I ATGCAT 1 cut(s) 1039
FaqI GGGAC 1 cut(s) 757
FauNDI CATATG 1 cut(s) 977
Fnu4HI GCNGC 4 cut(s) 338, 758, 893, 958
FokI GGATG 5 cut(s) 586, 590, 729, 743, 858
Fsp4HI GCNGC 4 cut(s) 338, 758, 893, 958
FspBI CTAG 2 cut(s) 273, 309
GlaI GCGC 1 cut(s) 891
GluI GCNGC 4 cut(s) 338, 758, 893, 958
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 2 cut(s) 533, 1051
HapII CCGG 1 cut(s) 839
HgaI GACGC 3 cut(s) 749, 826, 836
HhaI GCGC 1 cut(s) 892
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 2 cut(s) 120, 245
HindII GTYRAC 2 cut(s) 120, 245
HinfI GANTC 4 cut(s) 174, 431, 1018, 1210
HpaI GTTAAC 1 cut(s) 120
HpaII CCGG 1 cut(s) 839
HphI GGTGA 1 cut(s) 853
Hpy166II GTNNAC 4 cut(s) 120, 245, 604, 637
Hpy188I TCNGA 6 cut(s) 170, 464, 528, 987, 1155, 1235
Hpy188III TCNNGA 5 cut(s) 182, 209, 422, 875, 1106
Hpy8I GTNNAC 4 cut(s) 120, 245, 604, 637
HpyAV CCTTC 2 cut(s) 359, 707
HpyCH4III ACNGT 5 cut(s) 127, 376, 641, 971, 1159
HpyCH4IV ACGT 1 cut(s) 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 337, 754, 868, 892, 1043, 1071
HpyF3I CTNAG 6 cut(s) 45, 461, 525, 630, 999, 1098
HpySE526I ACGT 1 cut(s) 1191
HspAI GCGC 1 cut(s) 890
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 311, 682, 1102
LmnI GCTCC 3 cut(s) 156, 211, 345
Lsp1109I GCAGC 4 cut(s) 349, 769, 879, 944
LweI GCATC 6 cut(s) 324, 414, 834, 880, 1046, 1186
MaeI CTAG 2 cut(s) 273, 309
MaeII ACGT 1 cut(s) 1191
MaeIII GTNAC 3 cut(s) 544, 971, 1175
MalI GATC 3 cut(s) 313, 684, 1104
MboI GATC 3 cut(s) 311, 682, 1102
MboII GAAGA 7 cut(s) 36, 39, 42, 45, 183, 931, 1016
MflI RGATCY 2 cut(s) 311, 682
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 2 cut(s) 533, 1051
MluCI AATT 9 cut(s) 150, 201, 234, 295, 467, 491, 652, 852, 1008
MluNI TGGCCA 2 cut(s) 533, 1051
MlyI GAGTC 2 cut(s) 425, 1219
Mox20I TGGCCA 2 cut(s) 533, 1051
Mph1103I ATGCAT 1 cut(s) 1039
MscI TGGCCA 2 cut(s) 533, 1051
MseI TTAA 5 cut(s) 59, 119, 149, 752, 786
MslI CAYNNNNRTG 2 cut(s) 332, 969
Msp20I TGGCCA 2 cut(s) 533, 1051
MspI CCGG 1 cut(s) 839
MspR9I CCNGG 1 cut(s) 1186
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 1 cut(s) 1186
MwoI GCNNNNNNNGC 6 cut(s) 337, 754, 868, 892, 1043, 1071
NdeI CATATG 1 cut(s) 977
NdeII GATC 3 cut(s) 311, 682, 1102
NlaIV GGNNCC 4 cut(s) 6, 158, 511, 563
NmeAIII GCCGAG 1 cut(s) 531
NmuCI GTSAC 2 cut(s) 971, 1175
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 3 cut(s) 726, 772, 1037
OliI CACNNNNGTG 1 cut(s) 969
PciI ACATGT 1 cut(s) 768
PctI GAATGC 1 cut(s) 1149
PfeI GAWTC 2 cut(s) 174, 1018
PinAI ACCGGT 1 cut(s) 838
PkrI GCNGC 4 cut(s) 339, 759, 894, 959
PleI GAGTC 2 cut(s) 425, 1218
PpsI GAGTC 2 cut(s) 425, 1218
PscI ACATGT 1 cut(s) 768
PsiI TTATAA 1 cut(s) 1163
Psp6I CCWGG 1 cut(s) 1184
PspGI CCWGG 1 cut(s) 1184
PspN4I GGNNCC 4 cut(s) 6, 158, 511, 563
PstNI CAGNNNCTG 1 cut(s) 1185
PsuI RGATCY 2 cut(s) 311, 682
RsaI GTAC 4 cut(s) 359, 603, 721, 1190
RsaNI GTAC 4 cut(s) 358, 602, 720, 1189
RseI CAYNNNNRTG 2 cut(s) 332, 969
SaqAI TTAA 5 cut(s) 59, 119, 149, 752, 786
SatI GCNGC 4 cut(s) 338, 758, 893, 958
Sau3AI GATC 3 cut(s) 311, 682, 1102
SchI GAGTC 2 cut(s) 425, 1219
ScrFI CCNGG 1 cut(s) 1186
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 6 cut(s) 324, 414, 834, 880, 1046, 1186
SfcI CTRYAG 1 cut(s) 1041
SmiMI CAYNNNNRTG 2 cut(s) 332, 969
SmlI CTYRAG 3 cut(s) 11, 504, 644
SmoI CTYRAG 3 cut(s) 11, 504, 644
Sse9I AATT 9 cut(s) 150, 201, 234, 295, 467, 491, 652, 852, 1008
SsiI CCGC 1 cut(s) 1147
SspMI CTAG 2 cut(s) 273, 309
StyD4I CCNGG 1 cut(s) 1184
TaaI ACNGT 5 cut(s) 127, 376, 641, 971, 1159
TaiI ACGT 1 cut(s) 1194
TaqI TCGA 3 cut(s) 484, 917, 1224
TasI AATT 9 cut(s) 150, 201, 234, 295, 467, 491, 652, 852, 1008
TatI WGTACW 2 cut(s) 601, 719
TfiI GAWTC 2 cut(s) 174, 1018
Tru1I TTAA 5 cut(s) 59, 119, 149, 752, 786
Tru9I TTAA 5 cut(s) 59, 119, 149, 752, 786
TscAI CASTG 3 cut(s) 49, 379, 1102
TseFI GTSAC 2 cut(s) 971, 1175
TseI GCWGC 4 cut(s) 337, 757, 892, 957
Tsp45I GTSAC 2 cut(s) 971, 1175
TspDTI ATGAA 4 cut(s) 116, 212, 686, 912
TspRI CASTG 3 cut(s) 49, 379, 1102
XapI RAATTY 4 cut(s) 295, 467, 491, 652
XceI RCATGY 3 cut(s) 726, 772, 1037
XspI CTAG 2 cut(s) 273, 309
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.