FvH4_1g28681

Uncharacterised protein family (UPF0261)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008344
Physical Location & Seq
Reverse (-)
20985517 .. 20986212
696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28681.t1

Sequence Viewer

Length: 330 bp
ATGGAATACACGTTTCGTTCATATTTGCTGAGCTTACAGGTCGAAATCACCGTCGTCGATGTCTTTGTCGACCGGAACAATTCTAACTTCATATCTGATCATACCGTAAATGATTTCGCCTTCGTTTCGAGGAATGAGGTCATCCCAGCCATTTTCAAAGCTGCGGATCAGCTTCCAGAGGACAAAGGCGACGCAGTGGATGTGATGACGGCGGTTTGGTTGGTTAGATTGGTGTTGGAGGATATCACTGGCCCCTTAGATCGCTCCCGATCGGAGTGTCGAAGCTTATTGTGTCTACAGTGGCGAGTGGCCAAACGAACCATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEP_hydrolase UPF0261

Protein Analysis

110

Amino Acids

12.53

Weight (kDa)

4.86

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 69, 295
AciI CCGC 2 cut(s) 164, 212
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 4 cut(s) 33, 161, 172, 285
AluI AGCT 4 cut(s) 33, 161, 172, 285
AlwI GGATC 1 cut(s) 174
AoxI GGCC 2 cut(s) 250, 309
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 40
BalI TGGCCA 1 cut(s) 311
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 225
BclI TGATCA 1 cut(s) 97
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 253
Bpu1102I GCTNAGC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 141, 205
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 145
Bsh1285I CGRYCG 2 cut(s) 73, 272
BshFI GGCC 2 cut(s) 252, 311
BsiEI CGRYCG 2 cut(s) 73, 272
BsiSI CCGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 252, 311
Bsp143I GATC 4 cut(s) 97, 166, 259, 269
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 2 cut(s) 164, 212
BspANI GGCC 2 cut(s) 252, 311
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 253
BssMI GATC 4 cut(s) 97, 166, 259, 269
Bst4CI ACNGT 3 cut(s) 52, 106, 300
BstDEI CTNAG 2 cut(s) 29, 256
BstF5I GGATG 2 cut(s) 141, 205
BstKTI GATC 4 cut(s) 100, 169, 262, 272
BstMBI GATC 4 cut(s) 97, 166, 259, 269
BstMCI CGRYCG 2 cut(s) 73, 272
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 2 cut(s) 252, 311
BtsCI GGATG 2 cut(s) 141, 205
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 246, 305
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 200
CviJI RGCY 7 cut(s) 33, 149, 161, 172, 252, 285, 311
CviKI_1 RGCY 7 cut(s) 33, 149, 161, 172, 252, 285, 311
DdeI CTNAG 2 cut(s) 29, 256
DpnI GATC 4 cut(s) 99, 168, 261, 271
DpnII GATC 4 cut(s) 97, 166, 259, 269
EaeI YGGCCR 1 cut(s) 309
Eco32I GATATC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 244
FaiI YATR 4 cut(s) 22, 92, 102, 326
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 2 cut(s) 69, 295
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 128, 212
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 2 cut(s) 252, 311
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 283
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 70, 296
Hpy188I TCNGA 2 cut(s) 97, 274
Hpy188III TCNNGA 2 cut(s) 176, 267
Hpy8I GTNNAC 2 cut(s) 70, 296
Hpy99I CGWCG 3 cut(s) 56, 59, 194
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 52, 106, 300
HpyCH4IV ACGT 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 29, 256
HpySE526I ACGT 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 4 cut(s) 97, 166, 259, 269
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 23, 86, 159, 189, 234
Lsp1109I GCAGC 1 cut(s) 148
MaeII ACGT 1 cut(s) 11
MalI GATC 4 cut(s) 99, 168, 261, 271
MboI GATC 4 cut(s) 97, 166, 259, 269
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 1 cut(s) 79
MluNI TGGCCA 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 123, 130, 172, 232
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 1 cut(s) 73
NdeII GATC 4 cut(s) 97, 166, 259, 269
NlaIV GGNNCC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 251
PvuI CGATCG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 68
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 4 cut(s) 97, 166, 259, 269
Sau96I GGNCC 1 cut(s) 251
SetI ASST 7 cut(s) 14, 35, 42, 141, 163, 174, 287
SfcI CTRYAG 1 cut(s) 296
SgeI CNNG 9 cut(s) 22, 50, 85, 141, 158, 188, 261, 279, 317
Sse9I AATT 1 cut(s) 79
SsiI CCGC 2 cut(s) 164, 212
TaaI ACNGT 3 cut(s) 52, 106, 300
TaiI ACGT 1 cut(s) 14
TaqI TCGA 5 cut(s) 42, 57, 69, 128, 280
TasI AATT 1 cut(s) 79
TscAI CASTG 3 cut(s) 201, 253, 305
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 9, 79
TspRI CASTG 3 cut(s) 201, 253, 305
XmiI GTMKAC 2 cut(s) 69, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.