Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008344

Physical Location & Seq

Genomic Coordinates Reverse (-)

7983242 .. 7984743

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAAAAAAAAATAACAGATGCCACTGCTTCTCTAACTACGAACTACAGAGGCTGATCCAAACAAATGAAGATCGGAAGGTAATGGTGTTCCCTCGTCATAAAAATCACCCTGAGTTTGTAAATGCATTGGTGGACTCGTTTTTAGAGATTAGTACAAAGAGTTATATTCAGTGTACTCCGAAAGTTTCTACTCCTGAATCGAATCAACAAGTTCATGAAAGTTCTGTTTCCAAGATATACTTGTCAAGCTCTGAGACTGTTCCACGTAACCTGAGCGACTTCCCAATAGTGGTATTGCAGCAACTCAAAGATCAAATAAACAGAGGAATTCCAATTATAGGGGCAGGTGCAGGGACAAGCATGTCTGCAAAGTTTGAAGAAGCTGGTGGTGTTGATCTGATGGTGGTTTACAATTCAGGGCGCTTTTGCATGGCAGGAAGAGGTTCATTGGCAGGCTTATTACCTTTTGCTGATGCAAATGCTGTAGTACTTGACATGGCCAATGAAGTTTTGCCAGTACCTGTTCTTGCTGGGGTATGTGGCACCGATCCTTTTGGCCGTATGGATTTCTTCCTAAGGCAGGTGGGATCGATTGGATTCTCTGGTGTCCAAAATTTTCCAACAGTTGGACTGTATGATGATAATTTTAGACAAAATCTTGAAGAAACTGGAATGGGATACCGATTGGAGATTGAGATGATTGGAAAAGCACATAAGATGGGGCTCTTTACAACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEP_hydrolase UPF0261

Protein Analysis

248

Amino Acids

27.28

Weight (kDa)

6.52

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEP_hydrolase	PF09370	99 - 247	3e-67	Phosphoenolpyruvate hydrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66420 AT5G66420
fragaria_vesca	FvH4_1g12760 FvH4_1g28681
malus_domestica	MD02G1142700.v1.1 MD02G1142900.v1.1 MD15G1256300.v1.1
prunus_persica	Prupe.7G158600_v2.0.a1 Prupe.7G158600_v2.0.a1
pyrus_communis	pycom02g11270 pycom15g22420
rosa_chinensis	RchiOBHm_Chr2g0100861
rosa_laevigata	RLG00000017019
rosa_multiflora	Rmu_sc0001659.1_g000032 Rmu_sc0004947.1_g000028
rosa_roxburghii	Rroxscaffold_2G00141790
rosa_rugosa	Rorug02G0093300
rosa_samantha	Rh2AG140800 Rh2BG145900 Rh2CG147100 Rh2DG146500 Rh3DG359200
rosa_wichuraiana	Rw2G011040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	338, 574
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	338, 574
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	629
AclWI	GGATC	3 cut(s)	52, 545, 598
AcoI	YGGCCR	2 cut(s)	501, 559
AcsI	RAATTY	2 cut(s)	330, 616
AfaI	GTAC	4 cut(s)	157, 178, 492, 522
AfiI	CCNNNNNNNGG	4 cut(s)	292, 341, 583, 629
AgsI	TTSAA	2 cut(s)	380, 665
AluBI	AGCT	2 cut(s)	252, 386
AluI	AGCT	2 cut(s)	252, 386
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	52, 545, 598
AlwNI	CAGNNNCTG	2 cut(s)	55, 524
AoxI	GGCC	2 cut(s)	501, 559
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	330, 616
Asp700I	GAANNNNTTC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	397, 715
BceAI	ACGGC	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	47, 486
BfoI	RGCGCY	1 cut(s)	427
BfuAI	ACCTGC	2 cut(s)	338, 574
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmcAI	AGTACT	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	547
BmsI	GCATC	2 cut(s)	11, 466
Bpu10I	CCTNAGC	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	593
BsaAI	YACGTR	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 341, 583, 629
Bse1I	ACTGG	2 cut(s)	518, 676
Bse21I	CCTNAGG	1 cut(s)	578
BseCI	ATCGAT	1 cut(s)	593
BseLI	CCNNNNNNNGG	4 cut(s)	292, 341, 583, 629
BseMII	CTCAG	3 cut(s)	105, 246, 266
BseNI	ACTGG	2 cut(s)	518, 676
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	503, 561
BshNI	GGYRCC	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	4 cut(s)	292, 341, 583, 629
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	503, 561
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
BspANI	GGCC	2 cut(s)	503, 561
BspCNI	CTCAG	3 cut(s)	106, 247, 267
BspDI	ATCGAT	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	547
BspMI	ACCTGC	2 cut(s)	338, 574
BspPI	GGATC	3 cut(s)	52, 545, 598
BspT107I	GGYRCC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	518, 676
BssMI	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
Bst4CI	ACNGT	3 cut(s)	262, 628, 636
Bst6I	CTCTTC	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	4 cut(s)	114, 255, 275, 578
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	6 cut(s)	60, 76, 316, 400, 553, 593
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
BstNSI	RCATGY	1 cut(s)	367
BstSFI	CTRYAG	2 cut(s)	47, 486
BstV1I	GCAGC	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	503, 561
BsuTUI	ATCGAT	1 cut(s)	593
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 179
BveI	ACCTGC	2 cut(s)	338, 574
Cac8I	GCNNGC	1 cut(s)	457
CaiI	CAGNNNCTG	2 cut(s)	55, 524
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	156, 177, 491, 521
CviAII	CATG	4 cut(s)	218, 364, 433, 499
CviJI	RGCY	7 cut(s)	55, 252, 386, 459, 503, 561, 727
CviKI_1	RGCY	7 cut(s)	55, 252, 386, 459, 503, 561, 727
CviQI	GTAC	4 cut(s)	156, 177, 491, 521
DdeI	CTNAG	4 cut(s)	114, 255, 275, 578
DpnI	GATC	6 cut(s)	59, 75, 315, 399, 552, 592
DpnII	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	501, 559
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	729
FaeI	CATG	4 cut(s)	221, 367, 436, 502
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	4 cut(s)	217, 363, 432, 498
Fnu4HI	GCNGC	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	1 cut(s)	302
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	503, 561
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	221, 367, 436, 502
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	137, 200, 205, 600
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	3 cut(s)	136, 177, 412
Hpy188I	TCNGA	4 cut(s)	78, 183, 256, 402
Hpy188III	TCNNGA	3 cut(s)	197, 218, 662
Hpy8I	GTNNAC	3 cut(s)	136, 177, 412
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	262, 628, 636
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	6 cut(s)	128, 301, 353, 371, 432, 479
HpyF3I	CTNAG	4 cut(s)	114, 255, 275, 578
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	4 cut(s)	221, 367, 436, 502
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	11, 466
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	6 cut(s)	59, 75, 315, 399, 552, 592
MboI	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
MboII	GAAGA	5 cut(s)	83, 392, 453, 565, 677
MhlI	GDGCHC	1 cut(s)	729
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	5 cut(s)	330, 336, 415, 616, 646
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	610, 647
MnlI	CCTC	4 cut(s)	45, 105, 320, 437
Mox20I	TGGCCA	1 cut(s)	503
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	503
NdeII	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
NlaIII	CATG	4 cut(s)	221, 367, 436, 502
NlaIV	GGNNCC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	367
PagI	TCATGA	1 cut(s)	217
PaqCI	CACCTGC	2 cut(s)	338, 574
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	200, 205, 600
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	547
PstNI	CAGNNNCTG	2 cut(s)	55, 524
RsaI	GTAC	4 cut(s)	157, 178, 492, 522
RsaNI	GTAC	4 cut(s)	156, 177, 491, 521
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	6 cut(s)	57, 73, 313, 397, 550, 590
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	2 cut(s)	11, 466
SfcI	CTRYAG	2 cut(s)	47, 486
Sse9I	AATT	5 cut(s)	330, 336, 415, 616, 646
TaaI	ACNGT	3 cut(s)	262, 628, 636
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	203, 593
TasI	AATT	5 cut(s)	330, 336, 415, 616, 646
TatI	WGTACW	3 cut(s)	155, 176, 490
TfiI	GAWTC	3 cut(s)	200, 205, 600
TscAI	CASTG	2 cut(s)	32, 179
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	6 cut(s)	17, 84, 206, 234, 438, 522
TspRI	CASTG	2 cut(s)	32, 179
Van91I	CCANNNNNTGG	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	330, 616
XceI	RCATGY	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	445
ZrmI	AGTACT	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.