Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016248

Physical Location & Seq

Genomic Coordinates Reverse (-)

21513547 .. 21518507

Gene Structure 4961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCCTCAATTCGAACATGCATCCATTCCCCATCTCAGATTGAAATCAAAACCCTACGCCCTAAATCGGATTCAGGCCAAATCTCTTCTTCTCCGACTTGTTCTTGCTTCAAAAAGGTAAACCCAGTACTTTCCTTTCAATTTCGAGCTCCATTAAGCCTTGCTTTTCAGTTCTGGAACCCAATCTCTTACTTCTCTCTTTTTCTGGGTTTCTCGACAAACCGCCACCGTCATCATGCTCTCCCTCGGCCTCCTCTTCACAACTTCCTTCTTCCTTCGTCATGCTCACCCTCCTCCTGGTACAACCTTGTGGGGAGCTTGATTTGGAAAAGAAGTGTGCTTTGGTTTCTGGGTATATGCCAAAGATATCTGCTGCAATTCTTGATGAAGCAGCTGGCAAGCTCACTGGCAAAGGGACTTGAAGGGCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

10.21

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_3g06910 FvH4_5g23501
rosa_chinensis	RchiOBHm_Chr2g0129411
rosa_roxburghii	Rroxscaffold_1G00024730 Rroxscaffold_1G00073070 Rroxscaffold_3G00243780 Rroxscaffold_5G00355540 Rroxscaffold_7G00195480
rosa_samantha	Rh2AG593600 Rh5BG149700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	223
AfaI	GTAC	2 cut(s)	129, 302
AfiI	CCNNNNNNNGG	2 cut(s)	67, 297
AgsI	TTSAA	4 cut(s)	44, 112, 140, 422
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	4 cut(s)	149, 318, 394, 402
AluI	AGCT	4 cut(s)	149, 318, 394, 402
Alw21I	GWGCWC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	76, 248
ApeKI	GCWGC	2 cut(s)	373, 391
AsuHPI	GGTGA	1 cut(s)	279
AsuII	TTCGAA	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	360, 403
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	298
BisI	GCNGC	2 cut(s)	374, 392
BlsI	GCNGC	2 cut(s)	375, 393
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 297
Bse1I	ACTGG	2 cut(s)	125, 411
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	67, 297
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	125, 411
BseRI	GAGGAG	2 cut(s)	243, 283
BseXI	GCAGC	2 cut(s)	360, 403
BshFI	GGCC	2 cut(s)	78, 250
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	67, 297
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	78, 250
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	78, 250
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	125, 411
BssECI	CCNNGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	91, 261
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	396, 400
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	360, 403
BsuRI	GGCC	2 cut(s)	78, 250
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	396, 400
Csp6I	GTAC	2 cut(s)	128, 301
CviAII	CATG	3 cut(s)	18, 236, 282
CviJI	RGCY	8 cut(s)	78, 149, 159, 250, 318, 394, 402, 427
CviKI_1	RGCY	8 cut(s)	78, 149, 159, 250, 318, 394, 402, 427
CviQI	GTAC	2 cut(s)	128, 301
DdeI	CTNAG	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	91, 261
EarI	CTCTTC	2 cut(s)	91, 261
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	3 cut(s)	21, 239, 285
FaiI	YATR	5 cut(s)	19, 237, 283, 356, 358
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	3 cut(s)	17, 235, 281
Fnu4HI	GCNGC	2 cut(s)	374, 392
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	374, 392
GluI	GCNGC	2 cut(s)	374, 392
HaeIII	GGCC	2 cut(s)	78, 250
Hin1II	CATG	3 cut(s)	21, 239, 285
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	39, 70, 96
Hpy188III	TCNNGA	3 cut(s)	175, 214, 382
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	278, 285, 416
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	21, 376
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	21, 239, 285
LmnI	GCTCC	2 cut(s)	154, 315
LpnPI	CCDG	9 cut(s)	60, 138, 160, 191, 283, 310, 335, 380, 392
Lsp1109I	GCAGC	2 cut(s)	360, 403
LweI	GCATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	78, 81, 248, 263
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	9, 140, 377
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	16, 255, 261, 264, 301, 304
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
NlaIII	CATG	3 cut(s)	21, 239, 285
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	375, 393
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	129, 302
RsaNI	GTAC	2 cut(s)	128, 301
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	2 cut(s)	374, 392
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	6 cut(s)	120, 151, 309, 320, 396, 404
SfaNI	GCATC	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	13
Sse9I	AATT	3 cut(s)	9, 140, 377
SsiI	CCGC	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	13, 145, 215
TasI	AATT	3 cut(s)	9, 140, 377
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	2 cut(s)	373, 391
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	411
XceI	RCATGY	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.