Rroxscaffold_3G00243780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016248
Physical Location & Seq
Forward (+)
36223181 .. 36238765
15585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243780.1

Sequence Viewer

Length: 432 bp
ATGGCGGCGCGTCCGACCTTTTTCTCGAACACGGATCATCAACCAGGTACCAGCACACTATCTCATCCTTTGTATGAAAAAAGAAGATTGGTTGATAGAATCAAGAAACAATTGTTTGCTACAAATGCAGAGAAAAAACCCCGCTGGGTAAAAGTAATTTATGATGAGATAGCAGTAAATTTGAATCCCGAACAAGAGGAGTTTGCAACAATGTACGCACAACATGTTAGGAGGAACAAGATGGTGATCGGGCTGCTTAGGGCAGTGGTACTCGTGTCACAGCATTATTGTGAGTTTCGTTATGTTCATTTCGAACTTTACGATTTGGAATTGAGTAATGATTGTGCCTTTGGTGATGACTATATGACAAGGGTTCTAATGTGGAAGAACAAGATGCTGGTTGTTTCGATTATAGGACGTGTGATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.84

Weight (kDa)

9.12

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 10
AciI CCGC 2 cut(s) 5, 142
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 3 cut(s) 49, 215, 270
AflIII ACRYGT 2 cut(s) 223, 418
AgsI TTSAA 1 cut(s) 184
AjiI CACGTC 1 cut(s) 419
AjnI CCWGG 1 cut(s) 43
AlwI GGATC 1 cut(s) 42
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 178
Asp718I GGTACC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 256, 365
AsuII TTCGAA 1 cut(s) 312
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BanI GGYRCC 1 cut(s) 47
BauI CACGAG 1 cut(s) 272
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 235, 418
BciT130I CCWGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 430
BisI GCNGC 2 cut(s) 6, 254
BlsI GCNGC 2 cut(s) 7, 255
Bme1390I CCNGG 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 240
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 428
BshNI GGYRCC 1 cut(s) 47
BsnI GGCC 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 34, 246
BspACI CCGC 2 cut(s) 5, 142
BspANI GGCC 1 cut(s) 428
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 47
BssMI GATC 2 cut(s) 34, 246
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 37, 249
BstMBI GATC 2 cut(s) 34, 246
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 428
BtrI CACGTC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 10
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 3 cut(s) 48, 214, 269
CviAII CATG 1 cut(s) 224
CviJI RGCY 2 cut(s) 253, 428
CviKI_1 RGCY 2 cut(s) 253, 428
CviQI GTAC 3 cut(s) 48, 214, 269
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 36, 248
DpnII GATC 2 cut(s) 34, 246
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 75, 162, 225, 303, 363, 365, 413
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 6, 254
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 6, 254
FspBI CTAG 1 cut(s) 430
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 6, 254
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 428
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 2 cut(s) 99, 184
HphI GGTGA 2 cut(s) 256, 365
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 25, 103, 188
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 2 cut(s) 128, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 8
KpnI GGTACC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 34, 246
LpnPI CCDG 5 cut(s) 30, 57, 64, 130, 383
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 384
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 430
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 36, 248
MboI GATC 2 cut(s) 34, 246
MboII GAAGA 2 cut(s) 96, 397
MfeI CAATTG 1 cut(s) 110
MluCI AATT 4 cut(s) 110, 156, 178, 329
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 2 cut(s) 190, 225
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 34, 246
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 1 cut(s) 227
NspV TTCGAA 1 cut(s) 312
PciI ACATGT 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 2 cut(s) 99, 184
PkrI GCNGC 2 cut(s) 7, 255
PscI ACATGT 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 49
RsaI GTAC 3 cut(s) 49, 215, 270
RsaNI GTAC 3 cut(s) 48, 214, 269
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 6, 254
Sau3AI GATC 2 cut(s) 34, 246
ScrFI CCNGG 1 cut(s) 45
SetI ASST 3 cut(s) 20, 49, 421
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 4 cut(s) 110, 156, 178, 329
SsiI CCGC 2 cut(s) 5, 142
SspMI CTAG 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 43
TaiI ACGT 1 cut(s) 421
TaqI TCGA 3 cut(s) 26, 312, 407
TasI AATT 4 cut(s) 110, 156, 178, 329
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 99, 184
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 90, 296
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 227
XspI CTAG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.