Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016248

Physical Location & Seq

Genomic Coordinates Forward (+)

34235457 .. 34251666

Gene Structure 16210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGGCCCGGTTAGAGAATATCCGAGAAGAAGAAACTGTTATTGTTTTGGAACCAAAAGAAGACGTCCTTGTCCTCAATCTGCCCATACTTGTTTCGATTGAGACAGATCTCTTGAATCTGCTGCGGAGTTGGCAAGGGAGATTGCAGTTGCCCCTTGTATCAATTGCAGTTCACACCCTAATGGTTGTTCATCATTCAGGATTACTAGGCAATAGCATGGAGATGGTGATCGGGCTGCTTAGGGCAGTGGTACTCGTGTCACAGCATTATTGTGAGATTCGTTATGTTCATTTCGAACTTTATGATTTGGAATTTGTGAGAGTGAATTGCTCTCTTGGTTGCAATGATATCGATTGGTTATGCCTCGGTAGCATTATGGCATTAATAGTCCAAGGTACGAAACATCATGAGAATGTGAGATATGGAGTTCGATCTTCAACACTGACTCGTCAAATCTTTGATATCCTGAATGTGTGTGGAACAATAGCATTTGTATTTGCAGGACATAGTGTAGCTTTAGAACTTCAAGCTATAATTTCTTCAGCTTTAGGGAAACCATCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

189

Amino Acids

21.07

Weight (kDa)

5.7

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_3g06910 FvH4_5g23501
rosa_chinensis	RchiOBHm_Chr2g0129411
rosa_roxburghii	Rroxscaffold_1G00024730 Rroxscaffold_1G00073070 Rroxscaffold_3G00243780 Rroxscaffold_5G00355540 Rroxscaffold_7G00195480
rosa_samantha	Rh2AG593600 Rh5BG149700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	1 cut(s)	69
AciI	CCGC	2 cut(s)	5, 127
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	255, 400
AgsI	TTSAA	3 cut(s)	118, 441, 530
AluBI	AGCT	3 cut(s)	518, 533, 548
AluI	AGCT	3 cut(s)	518, 533, 548
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	124, 238
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	245, 278
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	111, 225
BccI	CCATC	2 cut(s)	220, 568
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	3 cut(s)	6, 125, 239
BlsI	GCNGC	3 cut(s)	7, 126, 240
Bme1390I	CCNGG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	367, 394
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	367, 394
BseJI	GATNNNNATC	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	111, 225
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	109, 231, 434
BspACI	CCGC	2 cut(s)	5, 127
BspANI	GGCC	1 cut(s)	8
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	367, 394
BssMI	GATC	3 cut(s)	109, 231, 434
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	242
BstKTI	GATC	3 cut(s)	112, 234, 437
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	109, 231, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 372
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	111, 225
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 443
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	254, 399
CviAII	CATG	2 cut(s)	220, 410
CviJI	RGCY	5 cut(s)	8, 238, 518, 533, 548
CviKI_1	RGCY	5 cut(s)	8, 238, 518, 533, 548
CviQI	GTAC	2 cut(s)	254, 399
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	3 cut(s)	111, 233, 436
DpnII	GATC	3 cut(s)	109, 231, 434
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	394
Eco32I	GATATC	2 cut(s)	352, 466
Eco57I	CTGAAG	1 cut(s)	528
EcoRV	GATATC	2 cut(s)	352, 466
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	2 cut(s)	223, 413
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	2 cut(s)	219, 409
Fnu4HI	GCNGC	3 cut(s)	6, 125, 239
Fsp4HI	GCNGC	3 cut(s)	6, 125, 239
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	6, 125, 239
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	223, 413
HinfI	GANTC	3 cut(s)	118, 280, 448
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	115, 201, 410, 469
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	66, 566
HpyCH4V	TGCA	4 cut(s)	148, 170, 345, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 372
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	66, 566
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	223, 413
Kzo9I	GATC	3 cut(s)	109, 231, 434
LpnPI	CCDG	4 cut(s)	23, 186, 482, 489
Lsp1109I	GCAGC	2 cut(s)	111, 225
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	66, 566
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	3 cut(s)	111, 233, 436
MboI	GATC	3 cut(s)	109, 231, 434
MboII	GAAGA	5 cut(s)	41, 44, 74, 429, 534
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	4 cut(s)	165, 314, 328, 537
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	2 cut(s)	86, 377
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	5 cut(s)	182, 224, 273, 414, 565
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	133, 372
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	109, 231, 434
NlaIII	CATG	2 cut(s)	223, 413
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	261
NspV	TTCGAA	1 cut(s)	297
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	118, 280
PkrI	GCNGC	3 cut(s)	7, 126, 240
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Ppu21I	YACGTR	1 cut(s)	567
PshBI	ATTAAT	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	255, 400
RsaNI	GTAC	2 cut(s)	254, 399
RseI	CAYNNNNRTG	5 cut(s)	182, 224, 273, 414, 565
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	3 cut(s)	6, 125, 239
Sau3AI	GATC	3 cut(s)	109, 231, 434
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	6 cut(s)	69, 400, 520, 535, 550, 569
SfuI	TTCGAA	1 cut(s)	297
SmiMI	CAYNNNNRTG	5 cut(s)	182, 224, 273, 414, 565
Sse9I	AATT	4 cut(s)	165, 314, 328, 537
SsiI	CCGC	2 cut(s)	5, 127
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	69, 569
TaqI	TCGA	4 cut(s)	98, 297, 354, 433
TasI	AATT	4 cut(s)	165, 314, 328, 537
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	118, 280
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	2 cut(s)	255, 450
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	2 cut(s)	124, 238
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	182, 281
TspRI	CASTG	2 cut(s)	255, 450
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	1 cut(s)	314
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.