Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016248

Physical Location & Seq

Genomic Coordinates Reverse (-)

30737450 .. 30751587

Gene Structure 14138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGATCCTCGAGTTGGGGGACGATTCCGAGTCGACTGGAAGAACAGTAGTGGATCCTTTAGAGAGATCTACTTAGGTCCACACAAAAGGCTGGAGTTTTCGCTGCATCAATCTACGAACAAGTCCTATGCTAATTGTGGATCTTCAGATCCAAAATGGGTGCAAGTTAGGAGGAACAGGATGGTGATCGGGCTGCTTAGGGCGGTGGTACTCGAGTCACAGCATTATTACGCAGCAGGATTGAAGACCACCAAAAAGCGTCAAATCGGTGGCTACGGACTCGTCTTGATCTCCTCTTGGCCCCTACGGTGGTTGCTCACTGCGGCTTGGGCGGAAAACGTATCGGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

10.43

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_3g06910 FvH4_5g23501
rosa_chinensis	RchiOBHm_Chr2g0129411
rosa_roxburghii	Rroxscaffold_1G00024730 Rroxscaffold_1G00073070 Rroxscaffold_3G00243780 Rroxscaffold_5G00355540 Rroxscaffold_7G00195480
rosa_samantha	Rh2AG593600 Rh5BG149700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	203, 323, 332
AclWI	GGATC	5 cut(s)	12, 48, 61, 143, 148
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	14, 309
AgsI	TTSAA	1 cut(s)	244
AlwI	GGATC	5 cut(s)	12, 48, 61, 143, 148
Ama87I	CYCGRG	2 cut(s)	9, 212
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	103, 193, 233
AspS9I	GGNCC	3 cut(s)	77, 300, 347
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	2 cut(s)	9, 212
AvaII	GGWCC	2 cut(s)	77, 347
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BamHI	GGATCC	2 cut(s)	4, 53
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	90, 180, 245
BccI	CCATC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	4 cut(s)	104, 194, 234, 324
BlsI	GCNGC	4 cut(s)	105, 195, 235, 325
Bme18I	GGWCC	2 cut(s)	77, 347
BmeT110I	CYCGRG	2 cut(s)	9, 212
BmgT120I	GGNCC	3 cut(s)	77, 300, 347
BmiI	GGNNCC	4 cut(s)	6, 55, 302, 348
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 309
Bse1I	ACTGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	185
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	14, 309
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	90, 180, 245
BshFI	GGCC	1 cut(s)	301
BsiHKCI	CYCGRG	2 cut(s)	9, 212
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	14, 309
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	2 cut(s)	9, 212
Bsp143I	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
BspACI	CCGC	3 cut(s)	203, 323, 332
BspANI	GGCC	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	6, 55, 302, 348
BspPI	GGATC	5 cut(s)	12, 48, 61, 143, 148
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
Bst4CI	ACNGT	2 cut(s)	47, 309
BstDEI	CTNAG	2 cut(s)	73, 197
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	7 cut(s)	7, 56, 69, 143, 151, 189, 291
BstMBI	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	90, 180, 245
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	5 cut(s)	4, 53, 66, 140, 148
BstYI	RGATCY	5 cut(s)	4, 53, 66, 140, 148
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	77, 300, 347
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	209
CviJI	RGCY	5 cut(s)	91, 193, 273, 301, 326
CviKI_1	RGCY	5 cut(s)	91, 193, 273, 301, 326
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	73, 197
DpnI	GATC	7 cut(s)	6, 55, 68, 142, 150, 188, 290
DpnII	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
EciI	GGCGGA	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	77, 347
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	2 cut(s)	9, 212
EcoO109I	RGGNCCY	1 cut(s)	347
FaiI	YATR	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	104, 194, 234, 324
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	104, 194, 234, 324
GluI	GCNGC	4 cut(s)	104, 194, 234, 324
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	24, 30, 215, 279
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	34, 80
Hpy188I	TCNGA	2 cut(s)	29, 148
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	34, 80
HpyCH4III	ACNGT	2 cut(s)	47, 309
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	106, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	73, 197
HpySE526I	ACGT	1 cut(s)	339
Kzo9I	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
LpnPI	CCDG	4 cut(s)	22, 77, 163, 222
Lsp1109I	GCAGC	3 cut(s)	90, 180, 245
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	7 cut(s)	6, 55, 68, 142, 150, 188, 290
MboI	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
MboII	GAAGA	3 cut(s)	52, 135, 256
MflI	RGATCY	5 cut(s)	4, 53, 66, 140, 148
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	39, 224, 273
MnlI	CCTC	3 cut(s)	18, 165, 304
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
NlaIV	GGNNCC	4 cut(s)	6, 55, 302, 348
NmuCI	GTSAC	1 cut(s)	216
PaeR7I	CTCGAG	2 cut(s)	9, 212
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	4 cut(s)	105, 195, 235, 325
PleI	GAGTC	3 cut(s)	38, 223, 273
PpsI	GAGTC	3 cut(s)	38, 223, 273
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	6, 55, 302, 348
PspPI	GGNCC	3 cut(s)	77, 300, 347
PspPPI	RGGWCCY	1 cut(s)	347
PspXI	VCTCGAGB	2 cut(s)	9, 212
PsuI	RGATCY	5 cut(s)	4, 53, 66, 140, 148
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	4 cut(s)	104, 194, 234, 324
Sau3AI	GATC	7 cut(s)	4, 53, 66, 140, 148, 186, 288
Sau96I	GGNCC	3 cut(s)	77, 300, 347
SchI	GAGTC	3 cut(s)	39, 224, 273
SetI	ASST	2 cut(s)	79, 342
SfaNI	GCATC	1 cut(s)	115
Sfr274I	CTCGAG	2 cut(s)	9, 212
SinI	GGWCC	2 cut(s)	77, 347
SlaI	CTCGAG	2 cut(s)	9, 212
SmlI	CTYRAG	2 cut(s)	9, 212
SmoI	CTYRAG	2 cut(s)	9, 212
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	203, 323, 332
TaaI	ACNGT	2 cut(s)	47, 309
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	10, 33, 213
TasI	AATT	1 cut(s)	133
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	24
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	3 cut(s)	103, 193, 233
Tsp45I	GTSAC	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	77, 347
XhoI	CTCGAG	2 cut(s)	9, 212
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.