Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016248

Physical Location & Seq

Genomic Coordinates Reverse (-)

37826626 .. 37843279

Gene Structure 16654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATACTTGGTGAAAGAACCTGCCCCAACCACGACCGGACTATTCGTCATAGGCAGCTGGATGTGAACCCACATACCGCCATGCCAAACTCCAAACCAGCAAGATCCAACCGGGTATGGTATATGCACTGTCATTTGGAGCGTCATGCTACTTGGGGTATGGACACCGTTAGGAGGAACAGGATGGTGATCGGGCTGCTTAGGGCAGTGGTACTTGTGTCACAGCATTATTGTGAGTTTCGTTATGTTCATTTCGAACTTTACGATTTGGAATTCGACCTTCAACATCGTAGTCCGATCAAGATTGCAATCAAATTCCATGGCTGTAAAGTAACATATCATCACCGACTAAAGCTGCCTTCTCGATATCTACATGATGAAAAAACGAAGCAAGACATGCCCCAATTACTCAAGCGCCTCCCCACCATACACTACCGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

147

Amino Acids

17.84

Weight (kDa)

9.97

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_3g06910 FvH4_5g23501
rosa_chinensis	RchiOBHm_Chr2g0129411
rosa_roxburghii	Rroxscaffold_1G00024730 Rroxscaffold_1G00073070 Rroxscaffold_3G00243780 Rroxscaffold_5G00355540 Rroxscaffold_7G00195480
rosa_samantha	Rh2AG593600 Rh5BG149700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AciI	CCGC	2 cut(s)	78, 436
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	272, 314
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	284
AhdI	GACNNNNNGTC	1 cut(s)	45
AluBI	AGCT	2 cut(s)	58, 355
AluI	AGCT	2 cut(s)	58, 355
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	55, 196, 355
ApoI	RAATTY	2 cut(s)	272, 314
AspLEI	GCGC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	23, 199, 335
AsuII	TTCGAA	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	203, 236
BbvI	GCAGC	3 cut(s)	67, 183, 342
BccI	CCATC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	56, 197, 356
BlsI	GCNGC	3 cut(s)	57, 198, 357
Bme1390I	CCNGG	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	113
BsaBI	GATNNNNATC	2 cut(s)	188, 308
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse8I	GATNNNNATC	2 cut(s)	188, 308
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	67, 189
BseJI	GATNNNNATC	2 cut(s)	188, 308
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	67, 183, 342
Bsh1285I	CGRYCG	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	37, 112
BslI	CCNNNNNNNGG	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	104, 189, 297
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	2 cut(s)	78, 436
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	99
BspT104I	TTCGAA	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	104, 189, 297
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	131, 169
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	67, 189
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	3 cut(s)	107, 192, 300
BstMBI	GATC	3 cut(s)	104, 189, 297
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	67, 183, 342
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	67, 189
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	127, 213
BveI	ACCTGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	417
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	5 cut(s)	82, 146, 320, 374, 397
CviJI	RGCY	4 cut(s)	58, 196, 324, 355
CviKI_1	RGCY	4 cut(s)	58, 196, 324, 355
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	106, 191, 299
DpnII	GATC	3 cut(s)	104, 189, 297
DriI	GACNNNNNGTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	5 cut(s)	85, 149, 323, 377, 400
FatI	CATG	5 cut(s)	81, 145, 319, 373, 396
Fnu4HI	GCNGC	3 cut(s)	56, 197, 356
FokI	GGATG	2 cut(s)	74, 196
Fsp4HI	GCNGC	3 cut(s)	56, 197, 356
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	3 cut(s)	56, 197, 356
HaeII	RGCGCY	1 cut(s)	418
HapII	CCGG	2 cut(s)	37, 112
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	5 cut(s)	85, 149, 323, 377, 400
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	37, 112
HphI	GGTGA	3 cut(s)	23, 199, 335
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	301, 363
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	290, 369
HpyCH4III	ACNGT	2 cut(s)	131, 169
HpyCH4V	TGCA	2 cut(s)	127, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	85, 149, 323, 377, 400
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	104, 189, 297
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	34, 44, 50, 111, 125, 166
Lsp1109I	GCAGC	3 cut(s)	67, 183, 342
MaeIII	GTNAC	2 cut(s)	219, 331
MalI	GATC	3 cut(s)	106, 191, 299
MboI	GATC	3 cut(s)	104, 189, 297
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	3 cut(s)	272, 314, 404
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	168, 428
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	2 cut(s)	37, 112
MspR9I	CCNGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	104, 189, 297
NlaIII	CATG	5 cut(s)	85, 149, 323, 377, 400
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	57, 198, 357
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	3 cut(s)	56, 197, 356
Sau3AI	GATC	3 cut(s)	104, 189, 297
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	4 cut(s)	23, 60, 282, 357
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	272, 314, 404
SsiI	CCGC	2 cut(s)	78, 436
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	131, 169
TaqI	TCGA	3 cut(s)	255, 276, 364
TasI	AATT	3 cut(s)	272, 314, 404
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	2 cut(s)	134, 213
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	3 cut(s)	55, 196, 355
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	239, 393
TspRI	CASTG	2 cut(s)	134, 213
XapI	RAATTY	2 cut(s)	272, 314
XceI	RCATGY	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.