Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016248

Physical Location & Seq

Genomic Coordinates Forward (+)

15283669 .. 15284891

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAGCGGATCGTCGGCGGCAAGTACAAGCTTGGCCGCAAGAACGGCAGCGGATCGTTCGGTGAAATCTTTCTAGAAATGTGGTGGCGGGATCAGGTCATAGAACACACCACCACGTATATGAATGATGTGGTTTGCATTAGAGAGAACAACAGCTTGCATTATACCAAAAAGAAAAAAAGGAATTACAGAAGGAAAGAGCTGCAAAAGGCGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

73

Amino Acids

8.83

Weight (kDa)

9.67

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_1g29060 FvH4_3g06910 FvH4_5g23501
rosa_chinensis	RchiOBHm_Chr2g0129411
rosa_roxburghii	Rroxscaffold_1G00024730 Rroxscaffold_1G00073070 Rroxscaffold_3G00243780 Rroxscaffold_5G00355540 Rroxscaffold_7G00195480
rosa_samantha	Rh2AG593600 Rh5BG149700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	6 cut(s)	7, 18, 37, 51, 88, 212
AclWI	GGATC	3 cut(s)	17, 61, 99
AcoI	YGGCCR	1 cut(s)	34
AfaI	GTAC	1 cut(s)	26
AluBI	AGCT	3 cut(s)	31, 156, 202
AluI	AGCT	3 cut(s)	31, 156, 202
AlwI	GGATC	3 cut(s)	17, 61, 99
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	48, 202
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	60, 189
BceAI	ACGGC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	4 cut(s)	19, 37, 49, 203
BlsI	GCNGC	4 cut(s)	20, 38, 50, 204
BsaAI	YACGTR	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	60, 189
BshFI	GGCC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	9, 53, 91
BspACI	CCGC	6 cut(s)	7, 18, 37, 51, 88, 212
BspANI	GGCC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	17, 61, 99
BsrBI	CCGCTC	1 cut(s)	7
BssMI	GATC	3 cut(s)	9, 53, 91
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	12, 56, 94
BstMBI	GATC	3 cut(s)	9, 53, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	60, 189
BsuRI	GGCC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	4 cut(s)	31, 36, 156, 202
CviKI_1	RGCY	4 cut(s)	31, 36, 156, 202
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	3 cut(s)	11, 55, 93
DpnII	GATC	3 cut(s)	9, 53, 91
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
FaiI	YATR	4 cut(s)	101, 120, 122, 165
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	19, 37, 49, 203
Fsp4HI	GCNGC	4 cut(s)	19, 37, 49, 203
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	19, 37, 49, 203
HaeIII	GGCC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	138, 160, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	116
Kzo9I	GATC	3 cut(s)	9, 53, 91
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	80
Lsp1109I	GCAGC	2 cut(s)	60, 189
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	116
MalI	GATC	3 cut(s)	11, 55, 93
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	3 cut(s)	9, 53, 91
MluCI	AATT	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	3 cut(s)	9, 53, 91
PdmI	GAANNNNTTC	1 cut(s)	69
PkrI	GCNGC	4 cut(s)	20, 38, 50, 204
Ppu21I	YACGTR	1 cut(s)	117
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	4 cut(s)	19, 37, 49, 203
Sau3AI	GATC	3 cut(s)	9, 53, 91
SetI	ASST	5 cut(s)	33, 99, 119, 158, 204
SgeI	CNNG	9 cut(s)	34, 40, 44, 52, 86, 101, 107, 127, 169
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	6 cut(s)	7, 18, 37, 51, 88, 212
SspMI	CTAG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	119
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	21, 39
TseI	GCWGC	2 cut(s)	48, 202
TspDTI	ATGAA	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.