Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09680 |
| fragaria_vesca | FvH4_1g30171 |
| malus_domestica | MD17G1268500.v1.1 |
| prunus_persica | Prupe.3G166000_v2.0.a1 |
| pyrus_communis | pycom17g26700 |
| rosa_chinensis | RchiOBHm_Chr3g0491601 |
| rosa_laevigata | RLG00000022834 |
| rosa_roxburghii | Rroxscaffold_6G00392790 |
| rosa_rugosa | Rorug03G0250400 Rorug03G0250500 Rorug03G0250600 Rorug03G0250600 Rorug03G0250600 |
| rosa_samantha | Rh3AG299400 Rh3CG332200 Rh3DG333900 |
| rosa_wichuraiana | Rw3G026450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 108 |
| Acc16I | TGCGCA | 1 cut(s) | 370 |
| AciI | CCGC | 7 cut(s) | 45, 48, 196, 244, 277, 292, 309 |
| AcsI | RAATTY | 1 cut(s) | 415 |
| AcyI | GRCGYC | 1 cut(s) | 105 |
| AfaI | GTAC | 1 cut(s) | 434 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 276 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 119, 151 |
| AluBI | AGCT | 1 cut(s) | 79 |
| AluI | AGCT | 1 cut(s) | 79 |
| Alw21I | GWGCWC | 1 cut(s) | 393 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 62 |
| AoxI | GGCC | 3 cut(s) | 96, 225, 383 |
| ApoI | RAATTY | 1 cut(s) | 415 |
| AspLEI | GCGC | 1 cut(s) | 371 |
| AspS9I | GGNCC | 2 cut(s) | 97, 226 |
| BanII | GRGCYC | 1 cut(s) | 308 |
| BbsI | GAAGAC | 1 cut(s) | 313 |
| Bbv12I | GWGCWC | 1 cut(s) | 393 |
| BccI | CCATC | 2 cut(s) | 59, 212 |
| BceAI | ACGGC | 1 cut(s) | 111 |
| BfaI | CTAG | 1 cut(s) | 436 |
| BisI | GCNGC | 2 cut(s) | 48, 278 |
| BlsI | GCNGC | 2 cut(s) | 49, 279 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 226 |
| BmiI | GGNNCC | 1 cut(s) | 307 |
| BmsI | GCATC | 1 cut(s) | 99 |
| BpiI | GAAGAC | 1 cut(s) | 313 |
| BsaHI | GRCGYC | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 119, 125, 149, 155, 200, 221, 230, 251 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 276 |
| Bse118I | RCCGGY | 1 cut(s) | 296 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 276 |
| BseRI | GAGGAG | 3 cut(s) | 71, 229, 304 |
| BshFI | GGCC | 3 cut(s) | 98, 227, 385 |
| BsiHKAI | GWGCWC | 1 cut(s) | 393 |
| BsiSI | CCGG | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 276 |
| BsnI | GGCC | 3 cut(s) | 98, 227, 385 |
| Bsp1286I | GDGCHC | 2 cut(s) | 308, 393 |
| Bsp19I | CCATGG | 1 cut(s) | 222 |
| BspACI | CCGC | 7 cut(s) | 45, 48, 196, 244, 277, 292, 309 |
| BspANI | GGCC | 3 cut(s) | 98, 227, 385 |
| BspLI | GGNNCC | 1 cut(s) | 307 |
| BsrFI | RCCGGY | 1 cut(s) | 296 |
| BssAI | RCCGGY | 1 cut(s) | 296 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssNI | GRCGYC | 1 cut(s) | 105 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 2 cut(s) | 364, 432 |
| Bst6I | CTCTTC | 1 cut(s) | 159 |
| BstACI | GRCGYC | 1 cut(s) | 105 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 1 cut(s) | 373 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstF5I | GGATG | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 371 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 76, 357, 366 |
| BstNSI | RCATGY | 2 cut(s) | 375, 411 |
| BstV2I | GAAGAC | 1 cut(s) | 313 |
| BsuRI | GGCC | 3 cut(s) | 98, 227, 385 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtsCI | GGATG | 1 cut(s) | 204 |
| Cac8I | GCNNGC | 1 cut(s) | 373 |
| CaiI | CAGNNNCTG | 1 cut(s) | 62 |
| CfoI | GCGC | 1 cut(s) | 371 |
| Cfr10I | RCCGGY | 1 cut(s) | 296 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 226 |
| Csp6I | GTAC | 1 cut(s) | 433 |
| CviAII | CATG | 4 cut(s) | 101, 223, 372, 408 |
| CviJI | RGCY | 8 cut(s) | 70, 79, 98, 227, 263, 280, 306, 385 |
| CviKI_1 | RGCY | 8 cut(s) | 70, 79, 98, 227, 263, 280, 306, 385 |
| CviQI | GTAC | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 1 cut(s) | 159 |
| EarI | CTCTTC | 1 cut(s) | 159 |
| EciI | GGCGGA | 3 cut(s) | 34, 185, 298 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| Eco147I | AGGCCT | 1 cut(s) | 385 |
| Eco24I | GRGCYC | 1 cut(s) | 308 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 308 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 4 cut(s) | 104, 226, 375, 411 |
| FaiI | YATR | 7 cut(s) | 29, 102, 119, 224, 373, 404, 409 |
| FatI | CATG | 4 cut(s) | 100, 222, 371, 407 |
| FauI | CCCGC | 2 cut(s) | 251, 299 |
| Fnu4HI | GCNGC | 2 cut(s) | 48, 278 |
| FokI | GGATG | 1 cut(s) | 191 |
| FriOI | GRGCYC | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 2 cut(s) | 48, 278 |
| FspBI | CTAG | 1 cut(s) | 436 |
| FspI | TGCGCA | 1 cut(s) | 370 |
| GlaI | GCGC | 1 cut(s) | 370 |
| GluI | GCNGC | 2 cut(s) | 48, 278 |
| HaeIII | GGCC | 3 cut(s) | 98, 227, 385 |
| HapII | CCGG | 1 cut(s) | 297 |
| HhaI | GCGC | 1 cut(s) | 371 |
| Hin1I | GRCGYC | 1 cut(s) | 105 |
| Hin1II | CATG | 4 cut(s) | 104, 226, 375, 411 |
| Hin6I | GCGC | 1 cut(s) | 369 |
| HinP1I | GCGC | 1 cut(s) | 369 |
| HpaII | CCGG | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 1 cut(s) | 356 |
| Hpy99I | CGWCG | 1 cut(s) | 287 |
| HpyAV | CCTTC | 1 cut(s) | 341 |
| HpyCH4III | ACNGT | 2 cut(s) | 364, 432 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 76, 357, 366 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92I | GRCGYC | 1 cut(s) | 105 |
| Hsp92II | CATG | 4 cut(s) | 104, 226, 375, 411 |
| HspAI | GCGC | 1 cut(s) | 369 |
| LmnI | GCTCC | 3 cut(s) | 9, 84, 311 |
| LpnPI | CCDG | 7 cut(s) | 75, 137, 287, 310, 355, 367, 399 |
| LweI | GCATC | 1 cut(s) | 99 |
| MaeI | CTAG | 1 cut(s) | 436 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MboII | GAAGA | 3 cut(s) | 35, 146, 313 |
| MhlI | GDGCHC | 2 cut(s) | 308, 393 |
| MluCI | AATT | 1 cut(s) | 415 |
| MspI | CCGG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 76, 357, 366 |
| NcoI | CCATGG | 1 cut(s) | 222 |
| NlaIII | CATG | 4 cut(s) | 104, 226, 375, 411 |
| NlaIV | GGNNCC | 1 cut(s) | 307 |
| NsbI | TGCGCA | 1 cut(s) | 370 |
| NspI | RCATGY | 2 cut(s) | 375, 411 |
| PaeI | GCATGC | 1 cut(s) | 375 |
| PceI | AGGCCT | 1 cut(s) | 385 |
| PkrI | GCNGC | 2 cut(s) | 49, 279 |
| PspN4I | GGNNCC | 1 cut(s) | 307 |
| PspPI | GGNCC | 2 cut(s) | 97, 226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 62 |
| RsaI | GTAC | 1 cut(s) | 434 |
| RsaNI | GTAC | 1 cut(s) | 433 |
| SatI | GCNGC | 2 cut(s) | 48, 278 |
| Sau96I | GGNCC | 2 cut(s) | 97, 226 |
| SduI | GDGCHC | 2 cut(s) | 308, 393 |
| SetI | ASST | 6 cut(s) | 81, 108, 117, 126, 177, 349 |
| SfaNI | GCATC | 1 cut(s) | 99 |
| SphI | GCATGC | 1 cut(s) | 375 |
| Sse9I | AATT | 1 cut(s) | 415 |
| SseBI | AGGCCT | 1 cut(s) | 385 |
| SsiI | CCGC | 7 cut(s) | 45, 48, 196, 244, 277, 292, 309 |
| SspMI | CTAG | 1 cut(s) | 436 |
| StuI | AGGCCT | 1 cut(s) | 385 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 2 cut(s) | 364, 432 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 2 cut(s) | 111, 419 |
| TasI | AATT | 1 cut(s) | 415 |
| TatI | WGTACW | 1 cut(s) | 432 |
| TauI | GCSGC | 2 cut(s) | 50, 280 |
| TspDTI | ATGAA | 2 cut(s) | 36, 391 |
| TspGWI | ACGGA | 1 cut(s) | 307 |
| XapI | RAATTY | 1 cut(s) | 415 |
| XceI | RCATGY | 2 cut(s) | 375, 411 |
| XspI | CTAG | 1 cut(s) | 436 |
| ZraI | GACGTC | 1 cut(s) | 106 |