Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014105

Physical Location & Seq

Genomic Coordinates Forward (+)

36949030 .. 36952788

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG332200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGGCGCTCACCAAAATGGCAAGGAGCAATCAGTTTCTGCTTCCTCCCCACAATTACAAATTATGCTTCTCCACCATCCCTTGGTACAAGCCTCCTCCTCCTCCTCCTCGCCGCCGTGAACATGACAAAGAGGAACCGTTACTCTCCCTCCTCTCCGACGCCATCACCACCAGCAACACAAACCCTCTCCCTCTCAGGAAGCTCCTCCCTTCCCTCACCGCCCGTGACGTCATCAACCTCATCAACCTCAACCCCGACTCCCTCCCTCCCCACTCTCTCCTCTCCTTCTTCCACTGGCTCTCTTCCCACCCCACCTTTCGCCACACCCTCCAATCCTACCTCACCATGGCCCACTTCCTCTCCTCCCACCAAATGTTCCCCCAAGCCCTCTCCCTCCTACGACTCGTCGTTTCCCGCAAGGCCAAGGGCTCCGCCTCCTCCGTCTTCGCTTCCCTTCTCCAAACCAGAGGTACCCATCTCCACTCCGATTACGTCTTTCATGCTTTGATCAATTCCTACACGGATTCTGGGTTCCTGGGGGATGCCGTGCAGTGCTTTAGGTTGCTTAGGAAGCACGGTTACCGGATACCCTTTCAGGCTTGTGGTCATTTGCTTGATAAAATGTTCATGTTTAACACCCCTGTTGTCGCTTGGGGCTTTCTTTTGGAGATTTTGGATTCTGGGTTTCCACCCAACGTGTATAGTTTCAATGTTTTGATGCATAAAATGTGCAAGCAAGGTCATATCAGAGAGGCCCAGGCGGTGTTCGATGAAATTGGGAACAGGGGTTTGAACCCAACTGTAGTTAGTTTTAATACCTTGATTAATGGCTATTGTAAATCTGGCAATCTAGAGCAGGGTTTTAAGTTGAAGGCGGATATGGAGGGGAGAACAATGTGTCCTGATTTGTTTACTTACAGTGTTTTAATAAATGGGTTGTGTAAGGAAGGCAGGTTGGATGATGCATATGGGTTGTTTGATGAAATGTGTGTCACGGGTTTGGTTCCGAATGACGTCATATTCACCACTTTGATTGATGGGCAGTGTAAGAATGGGAATCTTGATCTGGCGCTGGAAATGTATCAGAAAATGTTAGGAAGAGGTATCAAACCAGATATAGTTACATACAATACACTCATAAATGGCCTTTGCAAGGTTGGAGATATGAAAGAAGCTAGGAAGCTTGTCGAAGAGATGAATACGAGAGGTTTCAAGCCTGACAAGATTACTTATACTACACTTATTGATGGATGCTGCAAAGAAGGAGATTTAGAATCGGCCATAGAGATAAGGAAGGAGATGATTAAAGAAGAGATTGCACTCGACAATGTAGCTTTCACAGCCCTTATTTCAGGCTTTTGCAGAGAGGGAAGAATCATCGAGGCAGAAAAAATGTTGAGGGAGATGTTAAAGGCCGGCATGAAGCCTGATGATGCCACTTATACAATGCTCATTGATGGTTTTTGCAAAACGGGTGATGTTAATATTGGTTTTAAGTTGCTCAAGGAAATGCAGGGTGATGGTCATGTACCAAGTGTTGTGACCTATAATGTGCTTATGAATGGATTATGCAAGCAAGGACAGATGAAAAATGCAAATATGCTGTTGAATGCTATGATTAACGTGGGGGTGGTGCCCGATGATATTACATACAACACTCTATTAGAAGGACATTGCAAGCATGGAAACCCAGATGACTTTGAGAAGCTATGGAGTGAGAAAGGACTTGTTCTTGATTATGCTTCGTATAATTCTCTAGTCAGTGAATTACATAAATCTTTAAAAAAGCGTCCGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

600

Amino Acids

67.5

Weight (kDa)

8.21

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	225 - 278	3.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	228 - 258	2.7e-07	PPR repeat
PPR_2	PF13041	231 - 271	1.6e-08	PPR repeat family
PPR_1	PF12854	262 - 295	4.9e-11	PPR repeat
PPR_2	PF13041	266 - 315	1.1e-17	PPR repeat family
PPR	PF01535	269 - 296	1e-05	PPR repeat
PPR_1	PF12854	299 - 329	1.3e-14	PPR repeat
PPR_2	PF13041	301 - 339	5.9e-10	PPR repeat family
PPR	PF01535	304 - 330	4e-08	PPR repeat
PPR_long	PF17177	318 - 415	4.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	325 - 381	1.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	333 - 364	2.2e-09	PPR repeat
PPR_2	PF13041	336 - 385	1.8e-18	PPR repeat family
PPR	PF01535	339 - 369	4e-07	PPR repeat
PPR_long	PF17177	353 - 451	8.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	367 - 399	8.2e-16	PPR repeat
PPR_2	PF13041	371 - 420	1.1e-22	PPR repeat family
PPR	PF01535	374 - 404	1.7e-09	PPR repeat
PPR_3	PF13812	394 - 451	4.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	402 - 434	8.2e-13	PPR repeat
PPR	PF01535	409 - 438	9e-09	PPR repeat
PPR_2	PF13041	409 - 455	4.7e-13	PPR repeat family
PPR_long	PF17177	413 - 567	4e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	440 - 469	5.1e-09	PPR repeat
PPR_2	PF13041	442 - 490	1.2e-16	PPR repeat family
PPR	PF01535	444 - 473	5.2e-08	PPR repeat
PPR_3	PF13812	465 - 521	1.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	473 - 505	1.5e-10	PPR repeat
PPR	PF01535	480 - 508	2.4e-06	PPR repeat
PPR_2	PF13041	480 - 525	1e-14	PPR repeat family
PPR_3	PF13812	499 - 556	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	507 - 539	3.4e-09	PPR repeat
PPR_2	PF13041	511 - 560	1.2e-17	PPR repeat family
PPR	PF01535	514 - 544	6e-06	PPR repeat
PPR_1	PF12854	543 - 571	2e-07	PPR repeat
PPR_2	PF13041	546 - 591	9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09680
fragaria_vesca	FvH4_1g30171
malus_domestica	MD17G1268500.v1.1
prunus_persica	Prupe.3G166000_v2.0.a1
pyrus_communis	pycom17g26700
rosa_chinensis	RchiOBHm_Chr3g0491601
rosa_laevigata	RLG00000022834
rosa_roxburghii	Rroxscaffold_6G00392790
rosa_rugosa	Rorug03G0250400 Rorug03G0250500 Rorug03G0250600 Rorug03G0250600 Rorug03G0250600
rosa_samantha	Rh3AG299400 Rh3CG332200 Rh3DG333900
rosa_wichuraiana	Rw3G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	231, 1017
Acc36I	ACCTGC	1 cut(s)	942
Acc65I	GGTACC	1 cut(s)	470
AccB1I	GGYRCC	2 cut(s)	470, 1633
AccB7I	CCANNNNNTGG	1 cut(s)	81
AciI	CCGC	6 cut(s)	112, 219, 415, 432, 761, 875
AcoI	YGGCCR	1 cut(s)	1278
AcyI	GRCGYC	3 cut(s)	159, 228, 1014
AfaI	GTAC	3 cut(s)	86, 472, 1530
AfiI	CCNNNNNNNGG	3 cut(s)	81, 346, 1153
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	5 cut(s)	709, 793, 871, 1213, 1609
AjnI	CCWGG	2 cut(s)	534, 756
AloI	GAACNNNNNNTCC	4 cut(s)	515, 547, 883, 915
AluBI	AGCT	5 cut(s)	202, 1175, 1183, 1334, 1708
AluI	AGCT	5 cut(s)	202, 1175, 1183, 1334, 1708
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	6 cut(s)	348, 420, 753, 1144, 1278, 1413
ApeKI	GCWGC	1 cut(s)	1254
AseI	ATTAAT	1 cut(s)	825
Asp718I	GGTACC	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	7, 1072
AspS9I	GGNCC	2 cut(s)	349, 754
AsuHPI	GGTGA	6 cut(s)	157, 208, 334, 1015, 1487, 1529
BaeGI	GKGCMC	1 cut(s)	1638
BanI	GGYRCC	2 cut(s)	470, 1633
BanII	GRGCYC	1 cut(s)	431
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	1241
BccI	CCATC	7 cut(s)	83, 170, 483, 1031, 1241, 1451, 1514
BceAI	ACGGC	2 cut(s)	99, 530
BciT130I	CCWGG	2 cut(s)	536, 758
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	3 cut(s)	851, 1176, 1757
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	2 cut(s)	8, 1073
BfuAI	ACCTGC	1 cut(s)	942
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	2 cut(s)	112, 1255
BlsI	GCNGC	2 cut(s)	113, 1256
Bme1390I	CCNGG	2 cut(s)	536, 758
BmgT120I	GGNCC	2 cut(s)	349, 754
BmiI	GGNNCC	6 cut(s)	135, 430, 472, 533, 1005, 1635
BmrFI	CCNGG	2 cut(s)	536, 758
BmsI	GCATC	5 cut(s)	532, 708, 952, 1241, 1423
BpiI	GAAGAC	1 cut(s)	436
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	1487
BsaHI	GRCGYC	3 cut(s)	159, 228, 1014
BsaJI	CCNNGG	5 cut(s)	80, 345, 423, 535, 756
BsaWI	WCCGGW	1 cut(s)	582
BsaXI	ACNNNNNCTCC	6 cut(s)	132, 162, 242, 272, 344, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 346, 1153
Bse118I	RCCGGY	1 cut(s)	1415
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	1672
BseBI	CCWGG	2 cut(s)	536, 758
BseDI	CCNNGG	5 cut(s)	80, 345, 423, 535, 756
BseGI	GGATG	4 cut(s)	75, 547, 964, 1256
BseLI	CCNNNNNNNGG	3 cut(s)	81, 346, 1153
BseMI	GCAATG	1 cut(s)	1672
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	1638
BseXI	GCAGC	1 cut(s)	1241
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	6 cut(s)	350, 422, 755, 1146, 1280, 1415
BshNI	GGYRCC	2 cut(s)	470, 1633
BsiSI	CCGG	2 cut(s)	583, 1416
BslI	CCNNNNNNNGG	3 cut(s)	81, 346, 1153
BsmI	GAATGC	1 cut(s)	1615
BsnI	GGCC	6 cut(s)	350, 422, 755, 1146, 1280, 1415
Bsp1286I	GDGCHC	2 cut(s)	431, 1638
Bsp143I	GATC	2 cut(s)	507, 1063
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	6 cut(s)	112, 219, 415, 432, 761, 875
BspANI	GGCC	6 cut(s)	350, 422, 755, 1146, 1280, 1415
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	6 cut(s)	135, 430, 472, 533, 1005, 1635
BspMI	ACCTGC	1 cut(s)	942
BspT107I	GGYRCC	2 cut(s)	470, 1633
BsrDI	GCAATG	1 cut(s)	1672
BsrFI	RCCGGY	1 cut(s)	1415
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	1415
BssECI	CCNNGG	5 cut(s)	80, 345, 423, 535, 756
BssMI	GATC	2 cut(s)	507, 1063
BssNI	GRCGYC	3 cut(s)	159, 228, 1014
BssT1I	CCWWGG	3 cut(s)	80, 345, 423
Bst2UI	CCWGG	2 cut(s)	536, 758
Bst4CI	ACNGT	4 cut(s)	138, 578, 802, 920
Bst6I	CTCTTC	5 cut(s)	307, 1093, 1185, 1305, 1790
BstACI	GRCGYC	3 cut(s)	159, 228, 1014
BstC8I	GCNNGC	4 cut(s)	734, 1417, 1574, 1679
BstDEI	CTNAG	2 cut(s)	194, 566
BstDSI	CCRYGG	1 cut(s)	345
BstEII	GGTNACC	1 cut(s)	578
BstENI	CCTNNNNNAGG	1 cut(s)	1151
BstF5I	GGATG	4 cut(s)	75, 547, 964, 1256
BstH2I	RGCGCY	2 cut(s)	8, 1073
BstHHI	GCGC	2 cut(s)	7, 1072
BstKTI	GATC	2 cut(s)	510, 1066
BstMBI	GATC	2 cut(s)	507, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	571, 1340
BstNI	CCWGG	2 cut(s)	536, 758
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	534, 756
BstSFI	CTRYAG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	1638
BstV1I	GCAGC	1 cut(s)	1241
BstV2I	GAAGAC	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	6 cut(s)	350, 422, 755, 1146, 1280, 1415
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	4 cut(s)	75, 547, 964, 1256
BtsI	GCAGTG	2 cut(s)	557, 1049
BtsIMutI	CAGTG	5 cut(s)	292, 557, 925, 1049, 1768
BveI	ACCTGC	1 cut(s)	942
Cac8I	GCNNGC	4 cut(s)	734, 1417, 1574, 1679
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	7, 1072
Cfr10I	RCCGGY	1 cut(s)	1415
Cfr13I	GGNCC	2 cut(s)	349, 754
CseI	GACGC	2 cut(s)	167, 1778
Csp6I	GTAC	3 cut(s)	85, 471, 1529
CspCI	CAANNNNNGTGG	2 cut(s)	1015, 1050
CviAII	CATG	7 cut(s)	122, 346, 500, 628, 1420, 1526, 1682
CviQI	GTAC	3 cut(s)	85, 471, 1529
DdeI	CTNAG	2 cut(s)	194, 566
DpnI	GATC	2 cut(s)	509, 1065
DpnII	GATC	2 cut(s)	507, 1063
DraI	TTTAAA	1 cut(s)	1782
EaeI	YGGCCR	1 cut(s)	1278
Eam1104I	CTCTTC	5 cut(s)	307, 1093, 1185, 1305, 1790
EarI	CTCTTC	5 cut(s)	307, 1093, 1185, 1305, 1790
EciI	GGCGGA	2 cut(s)	421, 890
Eco130I	CCWWGG	3 cut(s)	80, 345, 423
Eco24I	GRGCYC	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	1151
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	534, 756
EcoT14I	CCWWGG	3 cut(s)	80, 345, 423
EcoT22I	ATGCAT	2 cut(s)	723, 967
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	3 cut(s)	80, 345, 423
FaeI	CATG	7 cut(s)	125, 349, 503, 631, 1423, 1529, 1685
FatI	CATG	7 cut(s)	121, 345, 499, 627, 1419, 1525, 1681
FauI	CCCGC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	967
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	112, 1255
FokI	GGATG	4 cut(s)	62, 554, 971, 1263
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	112, 1255
FspBI	CTAG	3 cut(s)	851, 1176, 1757
GlaI	GCGC	2 cut(s)	6, 1071
GluI	GCNGC	2 cut(s)	112, 1255
HaeII	RGCGCY	2 cut(s)	8, 1073
HaeIII	GGCC	6 cut(s)	350, 422, 755, 1146, 1280, 1415
HapII	CCGG	2 cut(s)	583, 1416
HgaI	GACGC	2 cut(s)	167, 1778
HhaI	GCGC	2 cut(s)	7, 1072
Hin1I	GRCGYC	3 cut(s)	159, 228, 1014
Hin1II	CATG	7 cut(s)	125, 349, 503, 631, 1423, 1529, 1685
Hin6I	GCGC	2 cut(s)	5, 1070
HinP1I	GCGC	2 cut(s)	5, 1070
HindIII	AAGCTT	1 cut(s)	1181
HinfI	GANTC	7 cut(s)	257, 402, 524, 677, 1057, 1274, 1374
HpaII	CCGG	2 cut(s)	583, 1416
HphI	GGTGA	6 cut(s)	157, 208, 334, 1015, 1487, 1529
Hpy166II	GTNNAC	2 cut(s)	119, 912
Hpy188I	TCNGA	6 cut(s)	157, 487, 749, 1008, 1086, 1794
Hpy188III	TCNNGA	5 cut(s)	196, 851, 902, 1061, 1733
Hpy8I	GTNNAC	2 cut(s)	119, 912
Hpy99I	CGWCG	2 cut(s)	161, 410
HpyAV	CCTTC	8 cut(s)	219, 295, 464, 865, 941, 1256, 1288, 1661
HpyCH4III	ACNGT	4 cut(s)	138, 578, 802, 920
HpyCH4IV	ACGT	5 cut(s)	228, 492, 696, 1014, 1623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	571, 1340
HpyF3I	CTNAG	2 cut(s)	194, 566
HpySE526I	ACGT	5 cut(s)	228, 492, 696, 1014, 1623
Hsp92I	GRCGYC	3 cut(s)	159, 228, 1014
Hsp92II	CATG	7 cut(s)	125, 349, 503, 631, 1423, 1529, 1685
HspAI	GCGC	2 cut(s)	5, 1070
KpnI	GGTACC	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	1415
KroNI	GCCGGC	1 cut(s)	1417
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	507, 1063
LmnI	GCTCC	3 cut(s)	24, 207, 434
Lsp1109I	GCAGC	1 cut(s)	1241
LweI	GCATC	5 cut(s)	532, 708, 952, 1241, 1423
MaeI	CTAG	3 cut(s)	851, 1176, 1757
MaeII	ACGT	5 cut(s)	228, 492, 696, 1014, 1623
MaeIII	GTNAC	6 cut(s)	138, 224, 578, 991, 1120, 1540
MalI	GATC	2 cut(s)	509, 1065
MboI	GATC	2 cut(s)	507, 1063
MboII	GAAGA	7 cut(s)	280, 294, 436, 1110, 1202, 1322, 1383
MhlI	GDGCHC	2 cut(s)	431, 1638
MluCI	AATT	6 cut(s)	52, 59, 511, 774, 1750, 1766
MlyI	GAGTC	2 cut(s)	251, 396
MmeI	TCCRAC	3 cut(s)	180, 936, 1138
Mph1103I	ATGCAT	2 cut(s)	723, 967
MroNI	GCCGGC	1 cut(s)	1415
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	2 cut(s)	583, 1416
MspR9I	CCNGG	2 cut(s)	536, 758
Mva1269I	GAATGC	1 cut(s)	1615
MvaI	CCWGG	2 cut(s)	536, 758
MwoI	GCNNNNNNNGC	2 cut(s)	571, 1340
NaeI	GCCGGC	1 cut(s)	1417
NcoI	CCATGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	2 cut(s)	507, 1063
NgoMIV	GCCGGC	1 cut(s)	1415
NlaIII	CATG	7 cut(s)	125, 349, 503, 631, 1423, 1529, 1685
NlaIV	GGNNCC	6 cut(s)	135, 430, 472, 533, 1005, 1635
NmuCI	GTSAC	3 cut(s)	224, 991, 1540
NsiI	ATGCAT	2 cut(s)	723, 967
PctI	GAATGC	1 cut(s)	1615
PdiI	GCCGGC	1 cut(s)	1417
PfeI	GAWTC	5 cut(s)	524, 677, 1057, 1274, 1374
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	113, 1256
PleI	GAGTC	2 cut(s)	251, 396
PpsI	GAGTC	2 cut(s)	251, 396
PshBI	ATTAAT	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	534, 756
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	534, 756
PspN4I	GGNNCC	6 cut(s)	135, 430, 472, 533, 1005, 1635
PspPI	GGNCC	2 cut(s)	349, 754
PstNI	CAGNNNCTG	1 cut(s)	37
RsaI	GTAC	3 cut(s)	86, 472, 1530
RsaNI	GTAC	3 cut(s)	85, 471, 1529
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	2 cut(s)	112, 1255
Sau3AI	GATC	2 cut(s)	507, 1063
Sau96I	GGNCC	2 cut(s)	349, 754
SchI	GAGTC	2 cut(s)	251, 396
ScrFI	CCNGG	2 cut(s)	536, 758
SduI	GDGCHC	2 cut(s)	431, 1638
SfaNI	GCATC	5 cut(s)	532, 708, 952, 1241, 1423
SfcI	CTRYAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	1502
SmoI	CTYRAG	1 cut(s)	1502
Sse9I	AATT	6 cut(s)	52, 59, 511, 774, 1750, 1766
SsiI	CCGC	6 cut(s)	112, 219, 415, 432, 761, 875
SspI	AATATT	1 cut(s)	1486
SspMI	CTAG	3 cut(s)	851, 1176, 1757
StyD4I	CCNGG	2 cut(s)	534, 756
StyI	CCWWGG	3 cut(s)	80, 345, 423
TaaI	ACNGT	4 cut(s)	138, 578, 802, 920
TaiI	ACGT	5 cut(s)	231, 495, 699, 1017, 1626
TaqI	TCGA	4 cut(s)	768, 1188, 1323, 1380
TasI	AATT	6 cut(s)	52, 59, 511, 774, 1750, 1766
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	524, 677, 1057, 1274, 1374
TscAI	CASTG	5 cut(s)	299, 557, 925, 1049, 1768
TseFI	GTSAC	3 cut(s)	224, 991, 1540
TseI	GCWGC	1 cut(s)	1254
Tsp45I	GTSAC	3 cut(s)	224, 991, 1540
TspDTI	ATGAA	9 cut(s)	488, 616, 786, 996, 1181, 1211, 1436, 1574, 1601
TspGWI	ACGGA	2 cut(s)	430, 536
TspRI	CASTG	5 cut(s)	299, 557, 925, 1049, 1768
Van91I	CCANNNNNTGG	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	825
XagI	CCTNNNNNAGG	1 cut(s)	1151
XbaI	TCTAGA	1 cut(s)	850
XspI	CTAG	3 cut(s)	851, 1176, 1757
ZraI	GACGTC	2 cut(s)	229, 1015
Zsp2I	ATGCAT	2 cut(s)	723, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.