Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09680 |
| fragaria_vesca | FvH4_1g30171 |
| malus_domestica | MD17G1268500.v1.1 |
| prunus_persica | Prupe.3G166000_v2.0.a1 |
| pyrus_communis | pycom17g26700 |
| rosa_chinensis | RchiOBHm_Chr3g0491601 |
| rosa_laevigata | RLG00000022834 |
| rosa_roxburghii | Rroxscaffold_6G00392790 |
| rosa_rugosa | Rorug03G0250400 Rorug03G0250500 Rorug03G0250600 Rorug03G0250600 Rorug03G0250600 |
| rosa_samantha | Rh3AG299400 Rh3CG332200 Rh3DG333900 |
| rosa_wichuraiana | Rw3G026450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 717 |
| Acc36I | ACCTGC | 1 cut(s) | 1211 |
| Acc65I | GGTACC | 1 cut(s) | 488 |
| AccB1I | GGYRCC | 1 cut(s) | 488 |
| AciI | CCGC | 3 cut(s) | 90, 102, 618 |
| AclI | AACGTT | 1 cut(s) | 1409 |
| AclWI | GGATC | 1 cut(s) | 1809 |
| AcsI | RAATTY | 3 cut(s) | 982, 1426, 1781 |
| AfaI | GTAC | 3 cut(s) | 110, 490, 1545 |
| AflIII | ACRYGT | 1 cut(s) | 911 |
| AgsI | TTSAA | 9 cut(s) | 13, 310, 649, 724, 829, 886, 1183, 1228, 1786 |
| AjiI | CACGTC | 1 cut(s) | 914 |
| AluBI | AGCT | 9 cut(s) | 148, 220, 404, 964, 1198, 1336, 1349, 1591, 1723 |
| AluI | AGCT | 9 cut(s) | 148, 220, 404, 964, 1198, 1336, 1349, 1591, 1723 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| AlwI | GGATC | 1 cut(s) | 1809 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 199 |
| AoxI | GGCC | 2 cut(s) | 366, 1159 |
| ApeKI | GCWGC | 1 cut(s) | 1269 |
| ApoI | RAATTY | 3 cut(s) | 982, 1426, 1781 |
| AseI | ATTAAT | 2 cut(s) | 840, 1635 |
| Asp718I | GGTACC | 1 cut(s) | 488 |
| AspLEI | GCGC | 2 cut(s) | 383, 1570 |
| AspS9I | GGNCC | 1 cut(s) | 367 |
| AsuHPI | GGTGA | 5 cut(s) | 317, 377, 767, 1502, 1544 |
| AsuII | TTCGAA | 2 cut(s) | 598, 1796 |
| AxyI | CCTNAGG | 1 cut(s) | 1707 |
| BanI | GGYRCC | 1 cut(s) | 488 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1269, 1301 |
| BbsI | GAAGAC | 2 cut(s) | 144, 454 |
| BbvI | GCAGC | 1 cut(s) | 1256 |
| BccI | CCATC | 5 cut(s) | 164, 1046, 1256, 1495, 1529 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 578, 612 |
| BciVI | GTATCC | 1 cut(s) | 405 |
| BclI | TGATCA | 2 cut(s) | 942, 1464 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BfaI | CTAG | 6 cut(s) | 483, 858, 1298, 1548, 1592, 1772 |
| BfmI | CTRYAG | 1 cut(s) | 816 |
| BfuAI | ACCTGC | 1 cut(s) | 1211 |
| BfuI | GTATCC | 1 cut(s) | 405 |
| BisI | GCNGC | 2 cut(s) | 619, 1270 |
| BlsI | GCNGC | 2 cut(s) | 620, 1271 |
| BmgBI | CACGTC | 1 cut(s) | 914 |
| BmgT120I | GGNCC | 1 cut(s) | 367 |
| BmiI | GGNNCC | 4 cut(s) | 29, 490, 1020, 1650 |
| BmrI | ACTGGG | 1 cut(s) | 766 |
| BmsI | GCATC | 9 cut(s) | 461, 505, 627, 723, 967, 1256, 1438, 1515, 1615 |
| BmuI | ACTGGG | 1 cut(s) | 766 |
| BpiI | GAAGAC | 2 cut(s) | 144, 454 |
| BpmI | CTGGAG | 2 cut(s) | 887, 1635 |
| Bpu10I | CCTNAGC | 2 cut(s) | 581, 965 |
| Bpu14I | TTCGAA | 2 cut(s) | 598, 1796 |
| BpuEI | CTTGAG | 2 cut(s) | 626, 1502 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1118 |
| BsaJI | CCNNGG | 1 cut(s) | 20 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 266, 296, 953, 983 |
| Bse1I | ACTGG | 4 cut(s) | 317, 496, 565, 772 |
| Bse21I | CCTNAGG | 1 cut(s) | 1707 |
| Bse3DI | GCAATG | 2 cut(s) | 1092, 1687 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1118 |
| BseDI | CCNNGG | 1 cut(s) | 20 |
| BseGI | GGATG | 4 cut(s) | 345, 452, 1271, 1630 |
| BseJI | GATNNNNATC | 1 cut(s) | 1118 |
| BseMI | GCAATG | 2 cut(s) | 1092, 1687 |
| BseMII | CTCAG | 5 cut(s) | 165, 206, 226, 419, 1698 |
| BseNI | ACTGG | 4 cut(s) | 317, 496, 565, 772 |
| BseRI | GAGGAG | 6 cut(s) | 40, 196, 212, 287, 884, 1220 |
| BseXI | GCAGC | 1 cut(s) | 1256 |
| BshFI | GGCC | 2 cut(s) | 368, 1161 |
| BshNI | GGYRCC | 1 cut(s) | 488 |
| BsiSI | CCGG | 1 cut(s) | 1807 |
| BslFI | GGGAC | 1 cut(s) | 394 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 1 cut(s) | 394 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 2 cut(s) | 368, 1161 |
| Bsp119I | TTCGAA | 2 cut(s) | 598, 1796 |
| Bsp143I | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| BspACI | CCGC | 3 cut(s) | 90, 102, 618 |
| BspANI | GGCC | 2 cut(s) | 368, 1161 |
| BspCNI | CTCAG | 5 cut(s) | 164, 205, 225, 418, 1699 |
| BspLI | GGNNCC | 4 cut(s) | 29, 490, 1020, 1650 |
| BspMI | ACCTGC | 1 cut(s) | 1211 |
| BspPI | GGATC | 1 cut(s) | 1809 |
| BspT104I | TTCGAA | 2 cut(s) | 598, 1796 |
| BspT107I | GGYRCC | 1 cut(s) | 488 |
| BsrDI | GCAATG | 2 cut(s) | 1092, 1687 |
| BsrI | ACTGG | 4 cut(s) | 317, 496, 565, 772 |
| BssECI | CCNNGG | 1 cut(s) | 20 |
| BssMI | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 2 cut(s) | 817, 935 |
| Bst6I | CTCTTC | 4 cut(s) | 49, 325, 881, 1805 |
| BstBI | TTCGAA | 2 cut(s) | 598, 1796 |
| BstC8I | GCNNGC | 4 cut(s) | 562, 616, 1589, 1694 |
| BstDEI | CTNAG | 8 cut(s) | 151, 192, 212, 405, 581, 965, 1678, 1707 |
| BstF5I | GGATG | 4 cut(s) | 345, 452, 1271, 1630 |
| BstHHI | GCGC | 2 cut(s) | 383, 1570 |
| BstKTI | GATC | 4 cut(s) | 945, 1242, 1467, 1804 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMBI | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 72, 586, 1355 |
| BstNSI | RCATGY | 1 cut(s) | 564 |
| BstSFI | CTRYAG | 1 cut(s) | 816 |
| BstV1I | GCAGC | 1 cut(s) | 1256 |
| BstV2I | GAAGAC | 2 cut(s) | 144, 454 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1707 |
| BsuI | GTATCC | 1 cut(s) | 405 |
| BsuRI | GGCC | 2 cut(s) | 368, 1161 |
| BtrI | CACGTC | 1 cut(s) | 914 |
| BtsCI | GGATG | 4 cut(s) | 345, 452, 1271, 1630 |
| BtsI | GCAGTG | 1 cut(s) | 1064 |
| BtsIMutI | CAGTG | 3 cut(s) | 572, 940, 1064 |
| BveI | ACCTGC | 1 cut(s) | 1211 |
| Cac8I | GCNNGC | 4 cut(s) | 562, 616, 1589, 1694 |
| CaiI | CAGNNNCTG | 1 cut(s) | 199 |
| CfoI | GCGC | 2 cut(s) | 383, 1570 |
| Cfr13I | GGNCC | 1 cut(s) | 367 |
| CseI | GACGC | 3 cut(s) | 173, 566, 1406 |
| Csp6I | GTAC | 3 cut(s) | 109, 489, 1544 |
| CviAII | CATG | 4 cut(s) | 561, 611, 1435, 1697 |
| CviQI | GTAC | 3 cut(s) | 109, 489, 1544 |
| DdeI | CTNAG | 8 cut(s) | 151, 192, 212, 405, 581, 965, 1678, 1707 |
| DpnI | GATC | 4 cut(s) | 944, 1241, 1466, 1803 |
| DpnII | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| Eam1104I | CTCTTC | 4 cut(s) | 49, 325, 881, 1805 |
| EarI | CTCTTC | 4 cut(s) | 49, 325, 881, 1805 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco81I | CCTNAGG | 1 cut(s) | 1707 |
| EcoRI | GAATTC | 1 cut(s) | 1781 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 4 cut(s) | 564, 614, 1438, 1700 |
| FaqI | GGGAC | 1 cut(s) | 394 |
| FatI | CATG | 4 cut(s) | 560, 610, 1434, 1696 |
| FbaI | TGATCA | 2 cut(s) | 942, 1464 |
| Fnu4HI | GCNGC | 2 cut(s) | 619, 1270 |
| FokI | GGATG | 4 cut(s) | 332, 439, 1278, 1637 |
| Fsp4HI | GCNGC | 2 cut(s) | 619, 1270 |
| FspBI | CTAG | 6 cut(s) | 483, 858, 1298, 1548, 1592, 1772 |
| GlaI | GCGC | 2 cut(s) | 382, 1569 |
| GluI | GCNGC | 2 cut(s) | 619, 1270 |
| GsuI | CTGGAG | 2 cut(s) | 887, 1635 |
| HaeIII | GGCC | 2 cut(s) | 368, 1161 |
| HapII | CCGG | 1 cut(s) | 1807 |
| HgaI | GACGC | 3 cut(s) | 173, 566, 1406 |
| HhaI | GCGC | 2 cut(s) | 383, 1570 |
| Hin1II | CATG | 4 cut(s) | 564, 614, 1438, 1700 |
| Hin6I | GCGC | 2 cut(s) | 381, 1568 |
| HinP1I | GCGC | 2 cut(s) | 381, 1568 |
| HindIII | AAGCTT | 1 cut(s) | 1196 |
| HinfI | GANTC | 5 cut(s) | 203, 420, 600, 692, 862 |
| HpaII | CCGG | 1 cut(s) | 1807 |
| HphI | GGTGA | 5 cut(s) | 317, 377, 767, 1502, 1544 |
| Hpy188I | TCNGA | 6 cut(s) | 163, 215, 556, 813, 1023, 1101 |
| Hpy188III | TCNNGA | 8 cut(s) | 200, 476, 866, 917, 1298, 1368, 1652, 1748 |
| Hpy99I | CGWCG | 2 cut(s) | 167, 428 |
| HpyAV | CCTTC | 9 cut(s) | 237, 313, 746, 1271, 1303, 1376, 1480, 1676, 1792 |
| HpyCH4III | ACNGT | 2 cut(s) | 817, 935 |
| HpyCH4IV | ACGT | 4 cut(s) | 246, 332, 913, 1409 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 72, 586, 1355 |
| HpyF3I | CTNAG | 8 cut(s) | 151, 192, 212, 405, 581, 965, 1678, 1707 |
| HpySE526I | ACGT | 4 cut(s) | 246, 332, 913, 1409 |
| Hsp92II | CATG | 4 cut(s) | 564, 614, 1438, 1700 |
| HspAI | GCGC | 2 cut(s) | 381, 1568 |
| KpnI | GGTACC | 1 cut(s) | 492 |
| Ksp22I | TGATCA | 2 cut(s) | 942, 1464 |
| Kzo9I | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| LmnI | GCTCC | 4 cut(s) | 27, 225, 961, 1654 |
| Lsp1109I | GCAGC | 1 cut(s) | 1256 |
| LweI | GCATC | 9 cut(s) | 461, 505, 627, 723, 967, 1256, 1438, 1515, 1615 |
| MaeI | CTAG | 6 cut(s) | 483, 858, 1298, 1548, 1592, 1772 |
| MaeII | ACGT | 4 cut(s) | 246, 332, 913, 1409 |
| MaeIII | GTNAC | 3 cut(s) | 242, 1030, 1555 |
| MalI | GATC | 4 cut(s) | 944, 1241, 1466, 1803 |
| MboI | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| MboII | GAAGA | 8 cut(s) | 36, 149, 298, 312, 454, 898, 1083, 1785 |
| MfeI | CAATTG | 1 cut(s) | 61 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MmeI | TCCRAC | 4 cut(s) | 186, 836, 951, 1153 |
| MseI | TTAA | 7 cut(s) | 171, 840, 1320, 1424, 1497, 1509, 1635 |
| MslI | CAYNNNNRTG | 1 cut(s) | 565 |
| MspI | CCGG | 1 cut(s) | 1807 |
| MunI | CAATTG | 1 cut(s) | 61 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 72, 586, 1355 |
| NdeII | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| NlaIII | CATG | 4 cut(s) | 564, 614, 1438, 1700 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 490, 1020, 1650 |
| NmuCI | GTSAC | 2 cut(s) | 242, 1030 |
| NspI | RCATGY | 1 cut(s) | 564 |
| NspV | TTCGAA | 2 cut(s) | 598, 1796 |
| PaeI | GCATGC | 1 cut(s) | 564 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PfeI | GAWTC | 4 cut(s) | 420, 600, 692, 862 |
| PkrI | GCNGC | 2 cut(s) | 620, 1271 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| PshBI | ATTAAT | 2 cut(s) | 840, 1635 |
| PsiI | TTATAA | 1 cut(s) | 717 |
| Psp1406I | AACGTT | 1 cut(s) | 1409 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 490, 1020, 1650 |
| PspPI | GGNCC | 1 cut(s) | 367 |
| PstNI | CAGNNNCTG | 1 cut(s) | 199 |
| RsaI | GTAC | 3 cut(s) | 110, 490, 1545 |
| RsaNI | GTAC | 3 cut(s) | 109, 489, 1544 |
| RseI | CAYNNNNRTG | 1 cut(s) | 565 |
| SaqAI | TTAA | 7 cut(s) | 171, 840, 1320, 1424, 1497, 1509, 1635 |
| SatI | GCNGC | 2 cut(s) | 619, 1270 |
| Sau3AI | GATC | 4 cut(s) | 942, 1239, 1464, 1801 |
| Sau96I | GGNCC | 1 cut(s) | 367 |
| SchI | GAGTC | 1 cut(s) | 197 |
| SfaNI | GCATC | 9 cut(s) | 461, 505, 627, 723, 967, 1256, 1438, 1515, 1615 |
| SfcI | CTRYAG | 1 cut(s) | 816 |
| SfuI | TTCGAA | 2 cut(s) | 598, 1796 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 565 |
| SmlI | CTYRAG | 2 cut(s) | 641, 1517 |
| SmoI | CTYRAG | 2 cut(s) | 641, 1517 |
| SphI | GCATGC | 1 cut(s) | 564 |
| SsiI | CCGC | 3 cut(s) | 90, 102, 618 |
| SspMI | CTAG | 6 cut(s) | 483, 858, 1298, 1548, 1592, 1772 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 2 cut(s) | 817, 935 |
| TaiI | ACGT | 4 cut(s) | 249, 335, 916, 1412 |
| TaqI | TCGA | 4 cut(s) | 477, 598, 783, 1796 |
| TauI | GCSGC | 1 cut(s) | 621 |
| TfiI | GAWTC | 4 cut(s) | 420, 600, 692, 862 |
| Tru1I | TTAA | 7 cut(s) | 171, 840, 1320, 1424, 1497, 1509, 1635 |
| Tru9I | TTAA | 7 cut(s) | 171, 840, 1320, 1424, 1497, 1509, 1635 |
| TscAI | CASTG | 3 cut(s) | 572, 940, 1064 |
| TseFI | GTSAC | 2 cut(s) | 242, 1030 |
| TseI | GCWGC | 1 cut(s) | 1269 |
| Tsp45I | GTSAC | 2 cut(s) | 242, 1030 |
| TspDTI | ATGAA | 9 cut(s) | 150, 539, 599, 801, 1011, 1226, 1451, 1589, 1616 |
| TspGWI | ACGGA | 2 cut(s) | 448, 1741 |
| TspRI | CASTG | 3 cut(s) | 572, 940, 1064 |
| VspI | ATTAAT | 2 cut(s) | 840, 1635 |
| XapI | RAATTY | 3 cut(s) | 982, 1426, 1781 |
| XbaI | TCTAGA | 1 cut(s) | 1297 |
| XceI | RCATGY | 1 cut(s) | 564 |
| XspI | CTAG | 6 cut(s) | 483, 858, 1298, 1548, 1592, 1772 |