FvH4_2g00920

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013601
Physical Location & Seq
Forward (+)
974075 .. 975688
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00920.t1

Sequence Viewer

Length: 687 bp
ATGATGGCTATGGAATGGTGTCCTCAATCTGCCATGCAAGCTTACCTCCACACTCTTCACCTGTGTAAAGTTCACAACAGTCAAGACGACAGCAGCACCTTCGGAAGCACAAGTTGCATCATAGAGCCAAAATGCATGGAGTTTGTATCAGCTTTGGCAGCTGGGAAGAGAGCAAGGTTAATGGTACAGATCACATCAGAAGGCGTAACGCCGCTGACTGTTTCACTGACTGTGGCCGCAAAACAGACCGGAGGCCGCCTAGTCGTCTGCATTACTCAACCTCTTAATCATCATCACGAGTATGTGGAGAAAATGAGCAAAACCCTATTTCTAGAAAATGGTCTCGATGGTATTGTTGAATTTGTTTATGGTATCGATCCTTCTGTGGTGGTGAAGCGGTTCAAGAGTATTGATTTTGCGGTCATCGACTGCAAGGTTGAAGAACACTTGAAGTTGTTGAAGATTATGAATCTTAATCCAAATGGGAGCATAGTGGTAATGAACAACCTTCGTCGGTCTAAAAGGGGTTGTGGAGCTGCGTTTCCTGATCAGGTTTTTAAGGAAAAGAAAGGGTTTGAATATGTAACACTACCTATTGGAGAAGGGATGGAGTTGACAAGATTCAGACCAAATGGCAAGTACCAGAGCAAGAGATACAAGAGATTTCATGTAACATATGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

229

Amino Acids

25.71

Weight (kDa)

9.03

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 2 - 218 7.4e-23 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013601)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00920
malus_domestica MD10G1005000.v1.1
prunus_persica Prupe.8G007800_v2.0.a1
pyrus_communis pycom10g00400
rosa_chinensis RchiOBHm_Chr6g0251271
rosa_laevigata RLG00000015468
rosa_multiflora Rmu_co8193732.1_g000001 Rmu_sc0001637.1_g000006 Rmu_sc0015396.1_g000007
rosa_roxburghii Rroxscaffold_7G00216860
rosa_rugosa Rorug05G0501400
rosa_samantha Rh6AG010800 Rh6BG001200 Rh6CG007800 Rh6DG008200
rosa_wichuraiana Rw6G001040 Rw6G001150 Rw6G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 212, 237, 256, 397, 419
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 2 cut(s) 186, 641
AgsI TTSAA 6 cut(s) 359, 403, 440, 451, 460, 578
AluBI AGCT 4 cut(s) 41, 152, 161, 536
AluI AGCT 4 cut(s) 41, 152, 161, 536
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 371
AoxI GGCC 2 cut(s) 234, 253
ApeKI GCWGC 3 cut(s) 93, 158, 536
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 50, 403
BarI GAAGNNNNNNTAC 2 cut(s) 364, 396
BauI CACGAG 1 cut(s) 296
BbvI GCAGC 3 cut(s) 105, 170, 523
BccI CCATC 2 cut(s) 341, 601
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 2 cut(s) 260, 332
BisI GCNGC 6 cut(s) 94, 159, 212, 237, 256, 537
BlsI GCNGC 6 cut(s) 95, 160, 213, 238, 257, 538
BmsI GCATC 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 347
BsaWI WCCGGW 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 375
BseGI GGATG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 105, 170, 523
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 2 cut(s) 236, 255
BshVI ATCGAT 1 cut(s) 375
BsiSI CCGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 2 cut(s) 236, 255
Bso31I GGTCTC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 189, 376, 547
BspACI CCGC 5 cut(s) 212, 237, 256, 397, 419
BspANI GGCC 2 cut(s) 236, 255
BspDI ATCGAT 1 cut(s) 375
BspPI GGATC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 347
BssMI GATC 3 cut(s) 189, 376, 547
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 80, 220, 232
Bst6I CTCTTC 2 cut(s) 60, 161
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 612
BstKTI GATC 3 cut(s) 192, 379, 550
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 189, 376, 547
BstMWI GCNNNNNNNGC 3 cut(s) 38, 114, 158
BstV1I GCAGC 3 cut(s) 105, 170, 523
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 2 cut(s) 236, 255
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 39
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 2 cut(s) 185, 640
CviAII CATG 3 cut(s) 34, 136, 668
CviJI RGCY 8 cut(s) 8, 41, 127, 152, 161, 236, 255, 536
CviKI_1 RGCY 8 cut(s) 8, 41, 127, 152, 161, 236, 255, 536
CviQI GTAC 2 cut(s) 185, 640
DpnI GATC 3 cut(s) 191, 378, 549
DpnII GATC 3 cut(s) 189, 376, 547
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 60, 161
EarI CTCTTC 2 cut(s) 60, 161
Eco31I GGTCTC 1 cut(s) 347
EcoT22I ATGCAT 1 cut(s) 137
FaeI CATG 3 cut(s) 37, 139, 671
FatI CATG 3 cut(s) 33, 135, 667
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 6 cut(s) 94, 159, 212, 237, 256, 537
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 6 cut(s) 94, 159, 212, 237, 256, 537
FspBI CTAG 2 cut(s) 260, 332
GluI GCNGC 6 cut(s) 94, 159, 212, 237, 256, 537
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 236, 255
HapII CCGG 1 cut(s) 249
Hin1II CATG 3 cut(s) 37, 139, 671
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 469, 621
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 50, 403
Hpy166II GTNNAC 2 cut(s) 73, 615
Hpy188I TCNGA 3 cut(s) 104, 199, 626
Hpy188III TCNNGA 6 cut(s) 83, 296, 332, 344, 403, 545
Hpy8I GTNNAC 2 cut(s) 73, 615
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 5 cut(s) 109, 194, 390, 518, 596
HpyCH4III ACNGT 3 cut(s) 80, 220, 232
HpyCH4V TGCA 5 cut(s) 37, 117, 135, 270, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 114, 158
Hsp92II CATG 3 cut(s) 37, 139, 671
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 189, 376, 547
LmnI GCTCC 2 cut(s) 486, 533
LpnPI CCDG 6 cut(s) 74, 147, 262, 536, 558, 656
Lsp1109I GCAGC 3 cut(s) 105, 170, 523
LweI GCATC 1 cut(s) 126
MaeI CTAG 2 cut(s) 260, 332
MaeIII GTNAC 3 cut(s) 205, 583, 670
MalI GATC 3 cut(s) 191, 378, 549
MboI GATC 3 cut(s) 189, 376, 547
MboII GAAGA 4 cut(s) 47, 178, 452, 472
MluCI AATT 2 cut(s) 359, 682
MnlI CCTC 4 cut(s) 33, 56, 245, 291
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 4 cut(s) 179, 285, 474, 558
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 161, 214
MspI CCGG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 38, 114, 158
NdeI CATATG 1 cut(s) 676
NdeII GATC 3 cut(s) 189, 376, 547
NlaIII CATG 3 cut(s) 37, 139, 671
NsiI ATGCAT 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 469, 621
PkrI GCNGC 6 cut(s) 95, 160, 213, 238, 257, 538
PspFI CCCAGC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 186, 641
RsaNI GTAC 2 cut(s) 185, 640
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 4 cut(s) 179, 285, 474, 558
SatI GCNGC 6 cut(s) 94, 159, 212, 237, 256, 537
Sau3AI GATC 3 cut(s) 189, 376, 547
SfaNI GCATC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 359, 682
SsiI CCGC 5 cut(s) 212, 237, 256, 397, 419
SspMI CTAG 2 cut(s) 260, 332
TaaI ACNGT 3 cut(s) 80, 220, 232
TaqI TCGA 3 cut(s) 345, 375, 426
TaqII GACCGA 1 cut(s) 504
TasI AATT 2 cut(s) 359, 682
TauI GCSGC 3 cut(s) 214, 239, 258
TfiI GAWTC 2 cut(s) 469, 621
Tru1I TTAA 4 cut(s) 179, 285, 474, 558
Tru9I TTAA 4 cut(s) 179, 285, 474, 558
TscAI CASTG 1 cut(s) 231
TseI GCWGC 3 cut(s) 93, 158, 536
TspDTI ATGAA 3 cut(s) 482, 515, 656
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 2 cut(s) 260, 332
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.