Rh6AG010800

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013601
Physical Location & Seq
Forward (+)
1178762 .. 1179313
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG010800.1

Sequence Viewer

Length: 552 bp
ATGGAGTTTGTATCCGCTTTGGCAGCTGGGAAGAAAGCAAGGTTAATGGTACAGATCACATCCGAAGGCGTAACGCCGCTGACTGTTTCACTGGCTGTGGCTGCAAAGCAGATCGGAGGCCGCCTCATTGTCTGCATTACTCAGCCTCTTAGTCATCATCACGAGTATGTGGAGAAAATGAGCAGAACCCTATTTCTGGAAAATGGTCTTGATGGTGTTGTTGAATTTGTTCATGGTATTGATCCTTGTCTGGTGGTGAAGCAGTTCAAGAATATTGATTTTGCGGTCATCGACTGCAAGATTGAAGAGCACTTAAAGGTGTTGAAGATTATGAATCTTAATCCAAATGGTAGCATGGTGGTACTGAATAATCTTCATCACTCTAAAAGGGGTGGTGGAGGTGCGTTTCCTGATCAGGTTTTTAAGCAAAAGAAAGGGTATGAATATGTGACACTACCTATTGGAGAAGGGATGGAGTTGACAAGATTCAGATCAAATGGCAAGTACCAGAGCAAGAGATACAAGAGGTTTCATGTAACATATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

183

Amino Acids

20.53

Weight (kDa)

9.22

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 2 - 176 2.2e-18 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013601)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00920
malus_domestica MD10G1005000.v1.1
prunus_persica Prupe.8G007800_v2.0.a1
pyrus_communis pycom10g00400
rosa_chinensis RchiOBHm_Chr6g0251271
rosa_laevigata RLG00000015468
rosa_multiflora Rmu_co8193732.1_g000001 Rmu_sc0001637.1_g000006 Rmu_sc0015396.1_g000007
rosa_roxburghii Rroxscaffold_7G00216860
rosa_rugosa Rorug05G0501400
rosa_samantha Rh6AG010800 Rh6BG001200 Rh6CG007800 Rh6DG008200
rosa_wichuraiana Rw6G001040 Rw6G001150 Rw6G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 77, 121, 284
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 3 cut(s) 51, 363, 506
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 4 cut(s) 224, 268, 305, 325
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 23, 101
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 228, 263
AsuHPI GGTGA 1 cut(s) 268
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 35, 88
BccI CCATC 2 cut(s) 206, 466
BciVI GTATCC 1 cut(s) 22
BclI TGATCA 1 cut(s) 412
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 4 cut(s) 24, 77, 102, 121
BlsI GCNGC 4 cut(s) 25, 78, 103, 122
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BsaBI GATNNNNATC 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 490
BseGI GGATG 2 cut(s) 59, 477
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 35, 88
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 5 cut(s) 54, 111, 241, 412, 491
BspACI CCGC 4 cut(s) 15, 77, 121, 284
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 96
BssMI GATC 5 cut(s) 54, 111, 241, 412, 491
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 141, 149
BstF5I GGATG 2 cut(s) 59, 477
BstKTI GATC 5 cut(s) 57, 114, 244, 415, 494
BstMBI GATC 5 cut(s) 54, 111, 241, 412, 491
BstMWI GCNNNNNNNGC 2 cut(s) 23, 101
BstV1I GCAGC 2 cut(s) 35, 88
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 59, 477
BtsIMutI CAGTG 1 cut(s) 89
Csp6I GTAC 3 cut(s) 50, 362, 505
CviAII CATG 3 cut(s) 233, 355, 533
CviJI RGCY 5 cut(s) 26, 95, 101, 120, 145
CviKI_1 RGCY 5 cut(s) 26, 95, 101, 120, 145
CviQI GTAC 3 cut(s) 50, 362, 505
DdeI CTNAG 2 cut(s) 141, 149
DpnI GATC 5 cut(s) 56, 113, 243, 414, 493
DpnII GATC 5 cut(s) 54, 111, 241, 412, 491
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
FaeI CATG 3 cut(s) 236, 358, 536
FaiI YATR 9 cut(s) 168, 234, 332, 356, 441, 447, 534, 541, 543
FatI CATG 3 cut(s) 232, 354, 532
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 24, 77, 102, 121
FokI GGATG 2 cut(s) 46, 484
Fsp4HI GCNGC 4 cut(s) 24, 77, 102, 121
GluI GCNGC 4 cut(s) 24, 77, 102, 121
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 3 cut(s) 236, 358, 536
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 2 cut(s) 334, 486
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 3 cut(s) 64, 116, 491
Hpy188III TCNNGA 5 cut(s) 161, 197, 209, 268, 410
Hpy8I GTNNAC 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 59, 461
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 104, 135, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 101
HpyF3I CTNAG 2 cut(s) 141, 149
Hsp92II CATG 3 cut(s) 236, 358, 536
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 54, 111, 241, 412, 491
LguI GCTCTTC 1 cut(s) 300
LpnPI CCDG 7 cut(s) 12, 77, 182, 236, 401, 423, 521
Lsp1109I GCAGC 2 cut(s) 35, 88
MaeIII GTNAC 3 cut(s) 70, 448, 535
MalI GATC 5 cut(s) 56, 113, 243, 414, 493
MboI GATC 5 cut(s) 54, 111, 241, 412, 491
MboII GAAGA 4 cut(s) 43, 317, 337, 365
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 224
MnlI CCTC 5 cut(s) 110, 134, 156, 392, 519
MroXI GAANNNNTTC 2 cut(s) 228, 263
MseI TTAA 4 cut(s) 44, 314, 339, 423
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 26, 79
MwoI GCNNNNNNNGC 2 cut(s) 23, 101
NdeI CATATG 1 cut(s) 541
NdeII GATC 5 cut(s) 54, 111, 241, 412, 491
NlaIII CATG 3 cut(s) 236, 358, 536
NmuCI GTSAC 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 300
PdmI GAANNNNTTC 2 cut(s) 228, 263
PfeI GAWTC 2 cut(s) 334, 486
PkrI GCNGC 4 cut(s) 25, 78, 103, 122
PspFI CCCAGC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 51, 363, 506
RsaNI GTAC 3 cut(s) 50, 362, 505
RseI CAYNNNNRTG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 44, 314, 339, 423
SatI GCNGC 4 cut(s) 24, 77, 102, 121
Sau3AI GATC 5 cut(s) 54, 111, 241, 412, 491
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 28, 44, 321, 403, 420, 460, 530
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 224
SsiI CCGC 4 cut(s) 15, 77, 121, 284
SspI AATATT 1 cut(s) 274
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 224
TauI GCSGC 2 cut(s) 79, 123
TfiI GAWTC 2 cut(s) 334, 486
Tru1I TTAA 4 cut(s) 44, 314, 339, 423
Tru9I TTAA 4 cut(s) 44, 314, 339, 423
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 23, 101
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 5 cut(s) 221, 347, 365, 456, 521
TspRI CASTG 1 cut(s) 96
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 228, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.