RLG00000015468

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013601
Physical Location & Seq
Reverse (-)
66529694 .. 66530493
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015468

Sequence Viewer

Length: 687 bp
ATGGCGATGGAATGGTGTCCTCAAGCTGCCTTGCAAGCTTATCTCCACACTCTTCACCTGTGTAAAGATCAAAACAATCAAGACTACAGCAGCAGCACTTTTGGAAGCACAAGTTGCATCATAGAGCCAAAATGCATGGAGTTTGTATCCGCTTTGGCAGCTGGGAAGAAAGCAAGGTTAATGGTACAGATCACATCCGAAGGCGTAACGCCGCTGACTGTTTCACTGGCTGTGGCCGCAAAGCAGACCGGAGGCCGCCTCGTTGTCTGCATTACTCAGCCTCTTAGTCATCATCACGAGTATGTGGAGAAAATGAGCAAAATCCTATTTCTGGATAATGGCCTTGATGGTGTTGTTGAATTTGTGTATGGTATTGATCCTTGTCTGGTGGTGAAGCAGTTCAAGGATATTGATTTTGCGGTCATCGACTGCAAGATTGAAGAGCACTTGAAGGTGTTAAGGATTATGAATCTTAATCCAAATGGTAGCATGGTGGTACTGAATAATCTTCATCAGTCTAAAAGGGGTGGCGGAGTTGCGTTTCCTGATCAGGTCTTTAAGCAAAAGAAAGGGTATGAATATGTGACACTACCTATTGGAGAAGGGATGGAGTTGACAAGATTCAGATCAAATGGCAAGTACCAGAGCAAGAGATACAAGAGGTTTCATGTAACATATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

229

Amino Acids

25.61

Weight (kDa)

8.4

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 221 2.7e-22 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013601)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00920
malus_domestica MD10G1005000.v1.1
prunus_persica Prupe.8G007800_v2.0.a1
pyrus_communis pycom10g00400
rosa_chinensis RchiOBHm_Chr6g0251271
rosa_laevigata RLG00000015468
rosa_multiflora Rmu_co8193732.1_g000001 Rmu_sc0001637.1_g000006 Rmu_sc0015396.1_g000007
rosa_roxburghii Rroxscaffold_7G00216860
rosa_rugosa Rorug05G0501400
rosa_samantha Rh6AG010800 Rh6BG001200 Rh6CG007800 Rh6DG008200
rosa_wichuraiana Rw6G001040 Rw6G001150 Rw6G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 150, 212, 237, 256, 419, 531
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 3 cut(s) 186, 498, 641
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 4 cut(s) 359, 403, 440, 451
AluBI AGCT 3 cut(s) 26, 38, 161
AluI AGCT 3 cut(s) 26, 38, 161
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 1 cut(s) 371
AoxI GGCC 3 cut(s) 234, 253, 340
ApeKI GCWGC 4 cut(s) 26, 90, 93, 158
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 47, 403
BauI CACGAG 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 13, 102, 105, 170
BccI CCATC 2 cut(s) 341, 601
BciVI GTATCC 1 cut(s) 157
BclI TGATCA 1 cut(s) 547
BfmI CTRYAG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 7 cut(s) 27, 91, 94, 159, 212, 237, 256
BlsI GCNGC 7 cut(s) 28, 92, 95, 160, 213, 238, 257
BmsI GCATC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpuEI CTTGAG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 625
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 625
BseGI GGATG 2 cut(s) 194, 612
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 4 cut(s) 13, 102, 105, 170
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 3 cut(s) 236, 255, 342
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 331
BsnI GGCC 3 cut(s) 236, 255, 342
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 5 cut(s) 67, 189, 376, 547, 626
BspACI CCGC 6 cut(s) 150, 212, 237, 256, 419, 531
BspANI GGCC 3 cut(s) 236, 255, 342
BspCNI CTCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 371
BspQI GCTCTTC 1 cut(s) 435
BsrI ACTGG 1 cut(s) 231
BssMI GATC 5 cut(s) 67, 189, 376, 547, 626
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 57, 435
BstAPI GCANNNNNTGC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 276, 284
BstF5I GGATG 2 cut(s) 194, 612
BstKTI GATC 5 cut(s) 70, 192, 379, 550, 629
BstMBI GATC 5 cut(s) 67, 189, 376, 547, 626
BstMWI GCNNNNNNNGC 4 cut(s) 35, 114, 158, 236
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 13, 102, 105, 170
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 236, 255, 342
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 194, 612
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 185, 497, 640
CviAII CATG 3 cut(s) 136, 490, 668
CviJI RGCY 9 cut(s) 26, 38, 127, 161, 230, 236, 255, 280, 342
CviKI_1 RGCY 9 cut(s) 26, 38, 127, 161, 230, 236, 255, 280, 342
CviQI GTAC 3 cut(s) 185, 497, 640
DdeI CTNAG 2 cut(s) 276, 284
DpnI GATC 5 cut(s) 69, 191, 378, 549, 628
DpnII GATC 5 cut(s) 67, 189, 376, 547, 626
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 57, 435
EarI CTCTTC 2 cut(s) 57, 435
EciI GGCGGA 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 137
FaeI CATG 3 cut(s) 139, 493, 671
FatI CATG 3 cut(s) 135, 489, 667
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 7 cut(s) 27, 91, 94, 159, 212, 237, 256
FokI GGATG 2 cut(s) 181, 619
Fsp4HI GCNGC 7 cut(s) 27, 91, 94, 159, 212, 237, 256
GluI GCNGC 7 cut(s) 27, 91, 94, 159, 212, 237, 256
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 3 cut(s) 236, 255, 342
HapII CCGG 1 cut(s) 249
Hin1II CATG 3 cut(s) 139, 493, 671
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 469, 621
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 47, 403
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 2 cut(s) 199, 626
Hpy188III TCNNGA 4 cut(s) 80, 296, 332, 545
Hpy8I GTNNAC 1 cut(s) 615
HpyAV CCTTC 3 cut(s) 194, 445, 596
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 5 cut(s) 34, 117, 135, 270, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 114, 158, 236
HpyF3I CTNAG 2 cut(s) 276, 284
Hsp92II CATG 3 cut(s) 139, 493, 671
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 5 cut(s) 67, 189, 376, 547, 626
LguI GCTCTTC 1 cut(s) 435
LpnPI CCDG 9 cut(s) 71, 147, 212, 262, 317, 371, 536, 558, 656
Lsp1109I GCAGC 4 cut(s) 13, 102, 105, 170
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 205, 583, 670
MalI GATC 5 cut(s) 69, 191, 378, 549, 628
MboI GATC 5 cut(s) 67, 189, 376, 547, 626
MboII GAAGA 4 cut(s) 44, 178, 452, 500
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 1 cut(s) 359
MnlI CCTC 5 cut(s) 30, 245, 269, 291, 654
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 4 cut(s) 179, 458, 474, 558
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 161, 214
MspI CCGG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 35, 114, 158, 236
NdeI CATATG 1 cut(s) 676
NdeII GATC 5 cut(s) 67, 189, 376, 547, 626
NlaIII CATG 3 cut(s) 139, 493, 671
NmuCI GTSAC 1 cut(s) 583
NsiI ATGCAT 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 469, 621
PkrI GCNGC 7 cut(s) 28, 92, 95, 160, 213, 238, 257
PspFI CCCAGC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 3 cut(s) 186, 498, 641
RsaNI GTAC 3 cut(s) 185, 497, 640
RseI CAYNNNNRTG 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 4 cut(s) 179, 458, 474, 558
SatI GCNGC 7 cut(s) 27, 91, 94, 159, 212, 237, 256
Sau3AI GATC 5 cut(s) 67, 189, 376, 547, 626
SduI GDGCHC 1 cut(s) 447
SetI ASST 9 cut(s) 28, 40, 60, 163, 179, 456, 555, 595, 665
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 359
SsiI CCGC 6 cut(s) 150, 212, 237, 256, 419, 531
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 426
TasI AATT 1 cut(s) 359
TauI GCSGC 3 cut(s) 214, 239, 258
TfiI GAWTC 2 cut(s) 469, 621
Tru1I TTAA 4 cut(s) 179, 458, 474, 558
Tru9I TTAA 4 cut(s) 179, 458, 474, 558
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 4 cut(s) 26, 90, 93, 158
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 4 cut(s) 482, 500, 591, 656
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.