Prupe.8G007800_v2.0.a1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013601
Physical Location & Seq
Forward (+)
611130 .. 612377
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G007800.1

Sequence Viewer

Length: 699 bp
ATGGAATGGTCTCCTGAAGATGCCTTGAAAGCTTACTTACACACTCTTCATCTGTGTAAGGTTGACAAAGATGAAGACTTGAGCCTTGGAAATCACACAACCACTACCAGCATTATCGTAGAGCCAAAATGCATGGAATTTATATCAGCTTTGGCAGCTGGAAAGCGAGCAAGATTAATCCTGCAAATAACCTCGCAAGGCATAACGCCAATGACAGTTTCACTGGCTGTGGCTGCAAAGCAAATCGGAGGCCGACTAATTGTGTGGATTAACAGTCAGGATATGGATCGTGTGCAGGAAAGTAGCAAAACCCTGTTTGTGGAAAATGGTCTTGACGAGGTCGTTGAATATGTTTATGGCACTGATCCTTGTATGCTGGTGAAGCAGTTGAAGAACATAGATTTTGCGGTTGTTGACTTCAAATTAAAAGATCACTTGAAATTGTTGAAGATTATGAACTTTAACCCAAATGGGTGCATAGTTGTAGGAACCAACGTTGATGACCCTAAGACTAAGAGGGATTTTGGAGGTCCATTGATTCTTGATCGAGTTTTTAAGGAGAAGAAAGGGTTTCGTTATGTGACTCTACCTTTAGGAGAAGGAATGGAGTTGACAAGATTTAGAGCCGTTGGCAATGGTGGCAAGTGCCATTGCCAAAGCAAGAGGTACAAAAGATTTCATGTAACATTTGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

233

Amino Acids

26.12

Weight (kDa)

8.66

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013601)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00920
malus_domestica MD10G1005000.v1.1
prunus_persica Prupe.8G007800_v2.0.a1
pyrus_communis pycom10g00400
rosa_chinensis RchiOBHm_Chr6g0251271
rosa_laevigata RLG00000015468
rosa_multiflora Rmu_co8193732.1_g000001 Rmu_sc0001637.1_g000006 Rmu_sc0015396.1_g000007
rosa_roxburghii Rroxscaffold_7G00216860
rosa_rugosa Rorug05G0501400
rosa_samantha Rh6AG010800 Rh6BG001200 Rh6CG007800 Rh6DG008200
rosa_wichuraiana Rw6G001040 Rw6G001150 Rw6G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 407
AclI AACGTT 1 cut(s) 495
AclWI GGATC 2 cut(s) 294, 359
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 7 cut(s) 28, 347, 391, 421, 439, 448, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AluBI AGCT 3 cut(s) 32, 149, 158
AluI AGCT 3 cut(s) 32, 149, 158
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 294, 359
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 155, 233
ApoI RAATTY 1 cut(s) 137
AseI ATTAAT 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 167, 220
BceAI ACGGC 1 cut(s) 611
BcoDI GTCTC 1 cut(s) 15
BisI GCNGC 2 cut(s) 156, 234
BlsI GCNGC 2 cut(s) 157, 235
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 490
BmsI GCATC 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 2 cut(s) 640, 649
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 2 cut(s) 640, 649
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 167, 220
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 286, 364, 430, 544
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 2 cut(s) 294, 359
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 2 cut(s) 640, 649
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 4 cut(s) 286, 364, 430, 544
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 217, 275
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 507, 513
BstKTI GATC 4 cut(s) 289, 367, 433, 547
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 4 cut(s) 286, 364, 430, 544
BstMWI GCNNNNNNNGC 5 cut(s) 29, 155, 233, 382, 639
BstV1I GCAGC 2 cut(s) 167, 220
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 221, 360
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 667
CviAII CATG 2 cut(s) 133, 680
CviJI RGCY 9 cut(s) 32, 84, 124, 149, 158, 227, 233, 252, 626
CviKI_1 RGCY 9 cut(s) 32, 84, 124, 149, 158, 227, 233, 252, 626
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 2 cut(s) 507, 513
DpnI GATC 4 cut(s) 288, 366, 432, 546
DpnII GATC 4 cut(s) 286, 364, 430, 544
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 136, 683
FatI CATG 2 cut(s) 132, 679
Fnu4HI GCNGC 2 cut(s) 156, 234
Fsp4HI GCNGC 2 cut(s) 156, 234
GluI GCNGC 2 cut(s) 156, 234
HaeIII GGCC 1 cut(s) 252
Hin1II CATG 2 cut(s) 136, 683
HincII GTYRAC 3 cut(s) 64, 415, 612
HindII GTYRAC 3 cut(s) 64, 415, 612
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 538, 583
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 3 cut(s) 64, 415, 612
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 14, 278, 332, 542
Hpy8I GTNNAC 3 cut(s) 64, 415, 612
HpyAV CCTTC 1 cut(s) 593
HpyCH4III ACNGT 2 cut(s) 217, 275
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 5 cut(s) 132, 184, 236, 295, 477
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 155, 233, 382, 639
HpyF3I CTNAG 2 cut(s) 507, 513
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 2 cut(s) 136, 683
Kzo9I GATC 4 cut(s) 286, 364, 430, 544
LpnPI CCDG 9 cut(s) 27, 121, 144, 194, 209, 263, 281, 326, 362
Lsp1109I GCAGC 2 cut(s) 167, 220
LweI GCATC 1 cut(s) 10
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 580, 682
MalI GATC 4 cut(s) 288, 366, 432, 546
MboI GATC 4 cut(s) 286, 364, 430, 544
MboII GAAGA 6 cut(s) 29, 38, 86, 403, 460, 574
MluCI AATT 5 cut(s) 137, 258, 422, 440, 694
MlyI GAGTC 1 cut(s) 577
MnlI CCTC 6 cut(s) 202, 242, 331, 510, 521, 657
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 5 cut(s) 176, 270, 425, 462, 555
MspA1I CMGCKG 1 cut(s) 158
MwoI GCNNNNNNNGC 5 cut(s) 29, 155, 233, 382, 639
NdeII GATC 4 cut(s) 286, 364, 430, 544
NlaIII CATG 2 cut(s) 136, 683
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 134
PfeI GAWTC 1 cut(s) 538
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 157, 235
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PshBI ATTAAT 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SaqAI TTAA 5 cut(s) 176, 270, 425, 462, 555
SatI GCNGC 2 cut(s) 156, 234
Sau3AI GATC 4 cut(s) 286, 364, 430, 544
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 10
SinI GGWCC 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 5 cut(s) 137, 258, 422, 440, 694
SsiI CCGC 1 cut(s) 407
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 217, 275
TaiI ACGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 547
TasI AATT 5 cut(s) 137, 258, 422, 440, 694
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 5 cut(s) 176, 270, 425, 462, 555
Tru9I TTAA 5 cut(s) 176, 270, 425, 462, 555
TscAI CASTG 2 cut(s) 228, 367
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 155, 233
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 4 cut(s) 38, 87, 470, 668
TspRI CASTG 2 cut(s) 228, 367
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 530
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.