Rmu_co8193732.1_g000001

Protein of unknown function (DUF1442)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8193732.1
Physical Location & Seq
Forward (+)
13 .. 675
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8193732.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
atggctgattccatcctgtactacttgatttattttcagtgtaaagatcaaagcaatcaagattgcagcagcacttttggaagcacaagttgcatcatagagccaaaatgcatggagtttgtatccgctttggcagctgggaagaaagcaaggttaatggtacagatcacatccgaaggcgtaacgccgctgactgtttcactggctgtggctgcaaagcagaccggaggccgcctcatcgtctgcatcactcagcctcttagtcatcatcacgagtatgtggagaaaatgagcaaaatcctatttctggaaaatggccttgatggtgttgttgaatttgtgtatggtattgatccttgtctggtggtgaagcagttcaaggatattgattttgcggtcatcgactgcaagattgaagagcacttgaaggtgttaaggattatgaatctaaatccaaatggtagcatggtggtactgaataatcttcatcagtctaaaaggggtggtggaggtgcgtttcctgatcaggtttttaagcaaaagaaagggtatgaatctgtgacactacctattggagaagggatggagttgacaagattcagatcaaatggcaagtaccagagcaagagatgcaagaggtttcatgtaacatacgaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

24.6

Weight (kDa)

8.36

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013601)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 126, 188, 232, 395
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 4 cut(s) 20, 162, 474, 617
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 4 cut(s) 335, 379, 416, 427
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 347
AoxI GGCC 2 cut(s) 229, 316
ApeKI GCWGC 4 cut(s) 66, 69, 134, 212
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 379
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 78, 81, 146, 199
BccI CCATC 3 cut(s) 20, 317, 577
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 523
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 6 cut(s) 67, 70, 135, 188, 213, 232
BlsI GCNGC 6 cut(s) 68, 71, 136, 189, 214, 233
BmsI GCATC 3 cut(s) 102, 255, 620
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BsaBI GATNNNNATC 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 601
BseGI GGATG 3 cut(s) 12, 170, 588
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 4 cut(s) 78, 81, 146, 199
BseYI CCCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 231, 318
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 2 cut(s) 231, 318
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 5 cut(s) 46, 165, 352, 523, 602
BspACI CCGC 4 cut(s) 126, 188, 232, 395
BspANI GGCC 2 cut(s) 231, 318
BspCNI CTCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 411
BsrI ACTGG 1 cut(s) 207
BssMI GATC 5 cut(s) 46, 165, 352, 523, 602
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 411
BstAPI GCANNNNNTGC 2 cut(s) 90, 630
BstDEI CTNAG 2 cut(s) 252, 260
BstF5I GGATG 3 cut(s) 12, 170, 588
BstKTI GATC 5 cut(s) 49, 168, 355, 526, 605
BstMBI GATC 5 cut(s) 46, 165, 352, 523, 602
BstMWI GCNNNNNNNGC 4 cut(s) 90, 134, 212, 630
BstV1I GCAGC 4 cut(s) 78, 81, 146, 199
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 231, 318
BtsCI GGATG 3 cut(s) 12, 170, 588
BtsIMutI CAGTG 2 cut(s) 44, 200
Csp6I GTAC 4 cut(s) 19, 161, 473, 616
CviAII CATG 3 cut(s) 112, 466, 644
CviJI RGCY 8 cut(s) 5, 103, 137, 206, 212, 231, 256, 318
CviKI_1 RGCY 8 cut(s) 5, 103, 137, 206, 212, 231, 256, 318
CviQI GTAC 4 cut(s) 19, 161, 473, 616
DdeI CTNAG 2 cut(s) 252, 260
DpnI GATC 5 cut(s) 48, 167, 354, 525, 604
DpnII GATC 5 cut(s) 46, 165, 352, 523, 602
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 113
FaeI CATG 3 cut(s) 115, 469, 647
FaiI YATR 9 cut(s) 98, 113, 279, 345, 443, 467, 552, 645, 652
FatI CATG 3 cut(s) 111, 465, 643
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 6 cut(s) 67, 70, 135, 188, 213, 232
FokI GGATG 2 cut(s) 157, 595
Fsp4HI GCNGC 6 cut(s) 67, 70, 135, 188, 213, 232
GluI GCNGC 6 cut(s) 67, 70, 135, 188, 213, 232
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 231, 318
HapII CCGG 1 cut(s) 225
Hin1II CATG 3 cut(s) 115, 469, 647
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 4 cut(s) 8, 445, 554, 597
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 2 cut(s) 175, 602
Hpy188III TCNNGA 4 cut(s) 59, 272, 308, 521
Hpy8I GTNNAC 1 cut(s) 591
HpyAV CCTTC 3 cut(s) 170, 421, 572
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 7 cut(s) 66, 93, 111, 215, 246, 408, 633
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 134, 212, 630
HpyF3I CTNAG 2 cut(s) 252, 260
Hsp92II CATG 3 cut(s) 115, 469, 647
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 5 cut(s) 46, 165, 352, 523, 602
LguI GCTCTTC 1 cut(s) 411
LpnPI CCDG 9 cut(s) 29, 123, 188, 238, 293, 347, 512, 534, 632
Lsp1109I GCAGC 4 cut(s) 78, 81, 146, 199
LweI GCATC 3 cut(s) 102, 255, 620
MaeIII GTNAC 3 cut(s) 181, 559, 646
MalI GATC 5 cut(s) 48, 167, 354, 525, 604
MboI GATC 5 cut(s) 46, 165, 352, 523, 602
MboII GAAGA 3 cut(s) 154, 428, 476
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 335
MnlI CCTC 5 cut(s) 221, 245, 267, 503, 630
Mph1103I ATGCAT 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 3 cut(s) 155, 434, 534
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 137, 190
MspI CCGG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 90, 134, 212, 630
NdeII GATC 5 cut(s) 46, 165, 352, 523, 602
NlaIII CATG 3 cut(s) 115, 469, 647
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 8, 445, 554, 597
PkrI GCNGC 6 cut(s) 68, 71, 136, 189, 214, 233
PspFI CCCAGC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 4 cut(s) 20, 162, 474, 617
RsaNI GTAC 4 cut(s) 19, 161, 473, 616
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 155, 434, 534
SatI GCNGC 6 cut(s) 67, 70, 135, 188, 213, 232
Sau3AI GATC 5 cut(s) 46, 165, 352, 523, 602
SduI GDGCHC 1 cut(s) 423
SetI ASST 7 cut(s) 139, 155, 432, 514, 531, 571, 641
SfaNI GCATC 3 cut(s) 102, 255, 620
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 1 cut(s) 335
SsiI CCGC 4 cut(s) 126, 188, 232, 395
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 335
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 190, 234
TfiI GAWTC 4 cut(s) 8, 445, 554, 597
Tru1I TTAA 3 cut(s) 155, 434, 534
Tru9I TTAA 3 cut(s) 155, 434, 534
TscAI CASTG 2 cut(s) 44, 207
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 4 cut(s) 66, 69, 134, 212
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 458, 476, 567, 632
TspRI CASTG 2 cut(s) 44, 207
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.