Rw6G001040

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013601
Physical Location & Seq
Forward (+)
1462982 .. 1463778
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001040.1

Sequence Viewer

Length: 684 bp
ATGGCGATGGAATGGTGTCCTCAAGCTGCCTTGCAAGCTTACCTCCACACTCTTCACCTGTGTAAAGATCAAAGCAATCAAGATTGCAGCAGCACTTTTGGAAGCACAAGTTGCATCATAGAGCCAAAATGCATGGAGTTTGTATCCGCTTTGGCAGCTGGGAAGAAAGCAAGGTTAATGGTACAGATCACATCCGAAGGCGTAACGCCGCTGACTGTTTCACTGGCTGTGGCTGCAAAGCAGACCGGAGGCCGCCTCATCGTCTGCATCACTCAGCCTCTTAGTCATCATCACGAGTATGTGGAGAAAATGAGCAAAATCCTATTTCTGGAAAATGGCCTTGATGGTGTTGTTGAATTTGTGTATGGTATTGATCCTTGTCTGGTGGTGAAGCAGTTCAAGGATATTGATTTTGCGGTCATCGACTGCAAGATTGAAGAGCACTTGAAGGTGTTAAGGATTATGAATCTAAATCCAAATGGTAGCATGGTGGTACTGAATAATCTTCATCAGTCTAAAAGGGGTGGTGGAGGTGCGTTTCCTGATCAGGTTTTTAAGCAAAAGAAAGGGTATGAATCTGTGACACTACCTATTGGAGAAGGGATGGAGTTGACAAGATTCAGATCAAATGGCAAGTACCAGAGCAAGAGATACAAGAGGTTTCATGTAACATATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

227

Amino Acids

25.35

Weight (kDa)

8.37

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 220 3e-23 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013601)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00920
malus_domestica MD10G1005000.v1.1
prunus_persica Prupe.8G007800_v2.0.a1
pyrus_communis pycom10g00400
rosa_chinensis RchiOBHm_Chr6g0251271
rosa_laevigata RLG00000015468
rosa_multiflora Rmu_co8193732.1_g000001 Rmu_sc0001637.1_g000006 Rmu_sc0015396.1_g000007
rosa_roxburghii Rroxscaffold_7G00216860
rosa_rugosa Rorug05G0501400
rosa_samantha Rh6AG010800 Rh6BG001200 Rh6CG007800 Rh6DG008200
rosa_wichuraiana Rw6G001040 Rw6G001150 Rw6G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 147, 209, 253, 416
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 3 cut(s) 183, 495, 638
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 4 cut(s) 356, 400, 437, 448
AluBI AGCT 3 cut(s) 26, 38, 158
AluI AGCT 3 cut(s) 26, 38, 158
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 1 cut(s) 368
AoxI GGCC 2 cut(s) 250, 337
ApeKI GCWGC 5 cut(s) 26, 87, 90, 155, 233
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 47, 400
BauI CACGAG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 5 cut(s) 13, 99, 102, 167, 220
BccI CCATC 2 cut(s) 338, 598
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 1 cut(s) 544
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 7 cut(s) 27, 88, 91, 156, 209, 234, 253
BlsI GCNGC 7 cut(s) 28, 89, 92, 157, 210, 235, 254
BmsI GCATC 2 cut(s) 123, 276
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpuEI CTTGAG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 622
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 622
BseGI GGATG 2 cut(s) 191, 609
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 5 cut(s) 13, 99, 102, 167, 220
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 252, 339
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 2 cut(s) 252, 339
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 5 cut(s) 67, 186, 373, 544, 623
BspACI CCGC 4 cut(s) 147, 209, 253, 416
BspANI GGCC 2 cut(s) 252, 339
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 432
BsrI ACTGG 1 cut(s) 228
BssMI GATC 5 cut(s) 67, 186, 373, 544, 623
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 57, 432
BstAPI GCANNNNNTGC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 273, 281
BstF5I GGATG 2 cut(s) 191, 609
BstKTI GATC 5 cut(s) 70, 189, 376, 547, 626
BstMBI GATC 5 cut(s) 67, 186, 373, 544, 623
BstMWI GCNNNNNNNGC 4 cut(s) 35, 111, 155, 233
BstV1I GCAGC 5 cut(s) 13, 99, 102, 167, 220
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 252, 339
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 191, 609
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 182, 494, 637
CviAII CATG 3 cut(s) 133, 487, 665
CviJI RGCY 9 cut(s) 26, 38, 124, 158, 227, 233, 252, 277, 339
CviKI_1 RGCY 9 cut(s) 26, 38, 124, 158, 227, 233, 252, 277, 339
CviQI GTAC 3 cut(s) 182, 494, 637
DdeI CTNAG 2 cut(s) 273, 281
DpnI GATC 5 cut(s) 69, 188, 375, 546, 625
DpnII GATC 5 cut(s) 67, 186, 373, 544, 623
Eam1104I CTCTTC 2 cut(s) 57, 432
EarI CTCTTC 2 cut(s) 57, 432
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 3 cut(s) 136, 490, 668
FatI CATG 3 cut(s) 132, 486, 664
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 7 cut(s) 27, 88, 91, 156, 209, 234, 253
FokI GGATG 2 cut(s) 178, 616
Fsp4HI GCNGC 7 cut(s) 27, 88, 91, 156, 209, 234, 253
GluI GCNGC 7 cut(s) 27, 88, 91, 156, 209, 234, 253
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 252, 339
HapII CCGG 1 cut(s) 246
Hin1II CATG 3 cut(s) 136, 490, 668
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 466, 575, 618
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 47, 400
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 2 cut(s) 196, 623
Hpy188III TCNNGA 4 cut(s) 80, 293, 329, 542
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 3 cut(s) 191, 442, 593
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 7 cut(s) 34, 87, 114, 132, 236, 267, 429
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 111, 155, 233
HpyF3I CTNAG 2 cut(s) 273, 281
Hsp92II CATG 3 cut(s) 136, 490, 668
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 5 cut(s) 67, 186, 373, 544, 623
LguI GCTCTTC 1 cut(s) 432
LpnPI CCDG 9 cut(s) 71, 144, 209, 259, 314, 368, 533, 555, 653
Lsp1109I GCAGC 5 cut(s) 13, 99, 102, 167, 220
LweI GCATC 2 cut(s) 123, 276
MaeIII GTNAC 3 cut(s) 202, 580, 667
MalI GATC 5 cut(s) 69, 188, 375, 546, 625
MboI GATC 5 cut(s) 67, 186, 373, 544, 623
MboII GAAGA 4 cut(s) 44, 175, 449, 497
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 1 cut(s) 356
MnlI CCTC 7 cut(s) 30, 53, 242, 266, 288, 524, 651
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 4 cut(s) 176, 455, 555, 682
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 158, 211
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 35, 111, 155, 233
NdeI CATATG 1 cut(s) 673
NdeII GATC 5 cut(s) 67, 186, 373, 544, 623
NlaIII CATG 3 cut(s) 136, 490, 668
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 466, 575, 618
PkrI GCNGC 7 cut(s) 28, 89, 92, 157, 210, 235, 254
PspFI CCCAGC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 3 cut(s) 183, 495, 638
RsaNI GTAC 3 cut(s) 182, 494, 637
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 176, 455, 555, 682
SatI GCNGC 7 cut(s) 27, 88, 91, 156, 209, 234, 253
Sau3AI GATC 5 cut(s) 67, 186, 373, 544, 623
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 2 cut(s) 123, 276
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 356
SsiI CCGC 4 cut(s) 147, 209, 253, 416
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 423
TasI AATT 1 cut(s) 356
TauI GCSGC 2 cut(s) 211, 255
TfiI GAWTC 3 cut(s) 466, 575, 618
Tru1I TTAA 4 cut(s) 176, 455, 555, 682
Tru9I TTAA 4 cut(s) 176, 455, 555, 682
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 5 cut(s) 26, 87, 90, 155, 233
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 4 cut(s) 479, 497, 588, 653
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.