Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1184474 .. 1185917

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCGAAGAGAATATTGAAGGAGCTCAGGGATCTGCAGAGAGATCCACCAACTTCATGTAGTGCAGGTCCTGTGGCTGAGGATATGTTTCACTGGCAAGCAACAATCATTGGTCCAAATGATAGTCCTTATTCAGGTGGTGTATTTGTTGTGACTATCCATTTTCCACCTGATTATCCCTTCAAACCTCCAAAGGTTGCCTTCAGGACCAAAGTGTTCCATCCAAATATAAACAGCAATGGTAACATCTGCTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATATCCAAGGTTTTGTTATCTATATGTTCACTGCTGACAGATCCGAACCCTGATGACCCCCTTGTTCCCGAGATTGCTCATATGTGCAAGTGTGACAAAGTCAAATATGAGTCAACGGCTCGGAGCTGGACTCATAAGTATGCCATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.55

Weight (kDa)

7.66

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 141	1.6e-53	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16740
fragaria_vesca	FvH4_2g01240
malus_domestica	MD05G1121200.v1.1
prunus_persica	Prupe.8G165100_v2.0.a1
pyrus_communis	pycom05g11540 pycom10g10670
rosa_chinensis	RchiOBHm_Chr6g0251901
rosa_laevigata	RLG00000015421
rosa_multiflora	Rmu_ssc0000303.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216320
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014100
rosa_wichuraiana	Rw6G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	41, 42, 329
AcuI	CTGAAG	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	22, 187
AluBI	AGCT	2 cut(s)	28, 420
AluI	AGCT	2 cut(s)	28, 420
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	41, 42, 329
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	71, 116, 210
AsuHPI	GGTGA	1 cut(s)	283
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	71, 116, 210
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	59
Bme18I	GGWCC	3 cut(s)	71, 116, 210
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	71, 116, 210
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
Bpu10I	CCTNAGC	2 cut(s)	29, 81
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	300, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	2 cut(s)	247, 281
BseDI	CCNNGG	2 cut(s)	300, 438
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	2 cut(s)	247, 281
BseMII	CTCAG	2 cut(s)	43, 72
BseNI	ACTGG	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	34, 46, 334
Bsp19I	CCATGG	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	42, 73
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	41, 42, 329
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	247, 281
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	300, 438
BssMI	GATC	3 cut(s)	34, 46, 334
BssT1I	CCWWGG	2 cut(s)	300, 438
Bst6I	CTCTTC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	29, 81
BstDSI	CCRYGG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	37, 49, 337
BstMBI	GATC	3 cut(s)	34, 46, 334
BstSFI	CTRYAG	1 cut(s)	38
BstX2I	RGATCY	3 cut(s)	34, 46, 334
BstYI	RGATCY	3 cut(s)	34, 46, 334
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	2 cut(s)	94, 323
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	71, 116, 210
CviAII	CATG	2 cut(s)	60, 439
CviJI	RGCY	5 cut(s)	5, 28, 80, 413, 420
CviKI_1	RGCY	5 cut(s)	5, 28, 80, 413, 420
DdeI	CTNAG	2 cut(s)	29, 81
DpnI	GATC	3 cut(s)	36, 48, 336
DpnII	GATC	3 cut(s)	34, 46, 334
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	300, 438
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	71, 116, 210
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	300, 438
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	300, 438
FaeI	CATG	2 cut(s)	63, 442
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	2 cut(s)	59, 438
FauNDI	CATATG	1 cut(s)	375
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	63, 442
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	280, 404, 424
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	323, 408
Hpy188I	TCNGA	2 cut(s)	339, 417
Hpy188III	TCNNGA	2 cut(s)	208, 362
Hpy8I	GTNNAC	2 cut(s)	323, 408
HpyAV	CCTTC	3 cut(s)	16, 193, 214
HpyCH4V	TGCA	3 cut(s)	40, 68, 381
HpyF3I	CTNAG	2 cut(s)	29, 81
Hsp92II	CATG	2 cut(s)	63, 442
Kzo9I	GATC	3 cut(s)	34, 46, 334
LmnI	GCTCC	3 cut(s)	25, 271, 417
MaeIII	GTNAC	3 cut(s)	154, 245, 386
MalI	GATC	3 cut(s)	36, 48, 336
MboI	GATC	3 cut(s)	34, 46, 334
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	3 cut(s)	34, 46, 334
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	3 cut(s)	289, 413, 418
MnlI	CCTC	2 cut(s)	76, 201
MslI	CAYNNNNRTG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	3 cut(s)	34, 46, 334
NlaIII	CATG	2 cut(s)	63, 442
NmuCI	GTSAC	2 cut(s)	154, 386
NspV	TTCGAA	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	392
PleI	GAGTC	3 cut(s)	288, 412, 418
PpsI	GAGTC	3 cut(s)	288, 412, 418
PpuMI	RGGWCCY	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	71
PspPI	GGNCC	3 cut(s)	71, 116, 210
PspPPI	RGGWCCY	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	34, 46, 334
PsyI	GACNNNGTC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	34, 46, 334
Sau96I	GGNCC	3 cut(s)	71, 116, 210
SchI	GAGTC	3 cut(s)	289, 413, 418
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	30, 73, 142, 175, 193, 201, 306, 422
SfcI	CTRYAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	3 cut(s)	71, 116, 210
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SspI	AATATT	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	300, 438
TaqI	TCGA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	101, 330
TseFI	GTSAC	2 cut(s)	154, 386
Tsp45I	GTSAC	2 cut(s)	154, 386
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	101, 330
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	71, 116, 210
XagI	CCTNNNNNAGG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.