Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017042

Physical Location & Seq

Genomic Coordinates Forward (+)

14057168 .. 14058244

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCTCAAAGAGAATATTGAAGGAGCTCAAGGACTTGCAAAGAGATCCACCAACTTCATGTAGTGCAGGTCCTGTGGCTGAGGACATGTTTCATTGGCAAGCAACAATAATTGGTCCAAATGATAGCCCCTATTCTGGGGGTGTCTTCCTTGTGACTATCAATTTTCCACCTGATTATCCTTTCAAACCTCCTAAGGTTGCCTTCAAAACCAAAGTTTTCCATCCAAATATAAACAGTAACGGCAATATTTGCTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATATCGAAGGTTTTACTGTCCATATGTTCATTGCTGACGGATCCAAACCCTGATGACCCTCTTGTACCTGAGATTGCTCATATGTGCAAGTGTGACAAAGGCAAATATGAGTCAACGGCTCGGAGCTGGACCCAGAAGTACGCCATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

6.81

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16740
fragaria_vesca	FvH4_2g01240
malus_domestica	MD05G1121200.v1.1
prunus_persica	Prupe.8G165100_v2.0.a1
pyrus_communis	pycom05g11540 pycom10g10670
rosa_chinensis	RchiOBHm_Chr6g0251901
rosa_laevigata	RLG00000015421
rosa_multiflora	Rmu_ssc0000303.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216320
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014100
rosa_wichuraiana	Rw6G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	41, 329, 342
AfaI	GTAC	2 cut(s)	360, 434
AfiI	CCNNNNNNNGG	2 cut(s)	137, 138
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	22, 187, 208
AluBI	AGCT	2 cut(s)	28, 420
AluI	AGCT	2 cut(s)	28, 420
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	41, 329, 342
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	3 cut(s)	71, 116, 423
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	71, 116, 423
AxyI	CCTNAGG	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	2 cut(s)	259, 426
BfuAI	ACCTGC	1 cut(s)	59
Bme18I	GGWCC	3 cut(s)	71, 116, 423
BmgT120I	GGNCC	3 cut(s)	71, 116, 423
BmiI	GGNNCC	2 cut(s)	336, 425
BpiI	GAAGAC	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	14, 251
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 138
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	281, 323
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	137, 138
BseMI	GCAATG	2 cut(s)	281, 323
BseMII	CTCAG	2 cut(s)	72, 354
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	137, 138
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	46, 334
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	73, 355
BspLI	GGNNCC	2 cut(s)	336, 425
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	41, 329, 342
BsrDI	GCAATG	2 cut(s)	281, 323
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	2 cut(s)	46, 334
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	239, 312
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	81, 195, 363
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	49, 337
BstMBI	GATC	2 cut(s)	46, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	46, 334
BstYI	RGATCY	2 cut(s)	46, 334
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	71, 116, 423
Csp6I	GTAC	2 cut(s)	359, 433
CviAII	CATG	3 cut(s)	60, 88, 439
CviJI	RGCY	6 cut(s)	5, 28, 80, 129, 413, 420
CviKI_1	RGCY	6 cut(s)	5, 28, 80, 129, 413, 420
CviQI	GTAC	2 cut(s)	359, 433
DdeI	CTNAG	3 cut(s)	81, 195, 363
DpnI	GATC	2 cut(s)	48, 336
DpnII	GATC	2 cut(s)	46, 334
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	71, 116, 423
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	3 cut(s)	63, 91, 442
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	3 cut(s)	59, 87, 438
FauNDI	CATATG	2 cut(s)	317, 375
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	63, 91, 442
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	280, 404
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	1 cut(s)	417
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	3 cut(s)	16, 214, 295
HpyCH4III	ACNGT	2 cut(s)	239, 312
HpyCH4V	TGCA	3 cut(s)	40, 68, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	3 cut(s)	81, 195, 363
Hsp92II	CATG	3 cut(s)	63, 91, 442
Kzo9I	GATC	2 cut(s)	46, 334
LmnI	GCTCC	3 cut(s)	25, 271, 417
LpnPI	CCDG	9 cut(s)	54, 87, 123, 186, 297, 357, 375, 406, 440
MaeIII	GTNAC	3 cut(s)	154, 239, 386
MalI	GATC	2 cut(s)	48, 336
MboI	GATC	2 cut(s)	46, 334
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	2 cut(s)	46, 334
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	111, 163
MlyI	GAGTC	2 cut(s)	289, 413
MnlI	CCTC	4 cut(s)	16, 76, 201, 363
MseI	TTAA	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	2 cut(s)	317, 375
NdeII	GATC	2 cut(s)	46, 334
NlaIII	CATG	3 cut(s)	63, 91, 442
NlaIV	GGNNCC	2 cut(s)	336, 425
NmuCI	GTSAC	2 cut(s)	154, 386
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PleI	GAGTC	2 cut(s)	288, 412
PpsI	GAGTC	2 cut(s)	288, 412
PpuMI	RGGWCCY	1 cut(s)	71
PscI	ACATGT	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	336, 425
PspPI	GGNCC	3 cut(s)	71, 116, 423
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	46, 334
RsaI	GTAC	2 cut(s)	360, 434
RsaNI	GTAC	2 cut(s)	359, 433
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	46, 334
Sau96I	GGNCC	3 cut(s)	71, 116, 423
SchI	GAGTC	2 cut(s)	289, 413
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	30, 73, 175, 193, 201, 306, 364, 422
SinI	GGWCC	3 cut(s)	71, 116, 423
SmlI	CTYRAG	2 cut(s)	29, 266
SmoI	CTYRAG	2 cut(s)	29, 266
Sse9I	AATT	2 cut(s)	111, 163
SspI	AATATT	2 cut(s)	18, 250
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	239, 312
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	111, 163
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	154, 386
Tsp45I	GTSAC	2 cut(s)	154, 386
TspDTI	ATGAA	3 cut(s)	48, 83, 312
TspGWI	ACGGA	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	71, 116, 423
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.