Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017042

Physical Location & Seq

Genomic Coordinates Forward (+)

15145849 .. 15147045

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCTCAAAGAGACTATTGAAGGAGCTCAAGGACTTGCAAAGAGATCCACCAACTTCATGTAGTGCAGGTCCTGTGGCTGAGGACATGTTTCATTGGCAAGCAACAATAATTGGTCCAAATGATAGCCCTTATTCTGGGGGTGTCTTCCTTGTGACTATCCATTTTCCACCTGATTATCCTTTCAAACCTCCAAAGGTTGCCTTCAGAACTAAAGTGTTCCATCCAAATATAAACAGCAGCGGCAGTATCTGCTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATTTCCAAGGTTTTACTGTCCATATGTTCATTGCTAACCGATCCAAACCCTGATGACCCTCTTGTGCCTGAGATTGCTCATATGTGCAAGAGTGACAAAGTCAAATATGAGTCAACGGCTCGGAGTTGGACCCAGAAGTATGCCAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.47

Weight (kDa)

7.68

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16740
fragaria_vesca	FvH4_2g01240
malus_domestica	MD05G1121200.v1.1
prunus_persica	Prupe.8G165100_v2.0.a1
pyrus_communis	pycom05g11540 pycom10g10670
rosa_chinensis	RchiOBHm_Chr6g0251901
rosa_laevigata	RLG00000015421
rosa_multiflora	Rmu_ssc0000303.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216320
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014100
rosa_wichuraiana	Rw6G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	41, 329
AcuI	CTGAAG	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	22, 187
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	2 cut(s)	41, 329
AlwNI	CAGNNNCTG	2 cut(s)	74, 252
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	71, 116, 423
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	71, 116, 423
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	241, 244
BlsI	GCNGC	2 cut(s)	242, 245
Bme18I	GGWCC	3 cut(s)	71, 116, 423
BmgT120I	GGNCC	3 cut(s)	71, 116, 423
BmiI	GGNNCC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	14, 251
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	281, 323
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	2 cut(s)	281, 323
BseMII	CTCAG	2 cut(s)	72, 354
BseXI	GCAGC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	46, 334
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	73, 355
BspLI	GGNNCC	1 cut(s)	425
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	41, 329
BsrDI	GCAATG	2 cut(s)	281, 323
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	46, 334
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	81, 363
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	49, 337
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	46, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	74, 252
Cfr13I	GGNCC	3 cut(s)	71, 116, 423
CviAII	CATG	2 cut(s)	60, 88
CviJI	RGCY	5 cut(s)	5, 28, 80, 129, 413
CviKI_1	RGCY	5 cut(s)	5, 28, 80, 129, 413
DdeI	CTNAG	2 cut(s)	81, 363
DpnI	GATC	2 cut(s)	48, 336
DpnII	GATC	2 cut(s)	46, 334
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	71, 116, 423
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	63, 91
FaiI	YATR	9 cut(s)	61, 89, 233, 317, 319, 375, 377, 402, 435
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	2 cut(s)	59, 87
FauNDI	CATATG	2 cut(s)	317, 375
Fnu4HI	GCNGC	2 cut(s)	241, 244
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	241, 244
GluI	GCNGC	2 cut(s)	241, 244
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	63, 91
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	280, 404
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	209, 417
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	16, 214
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	40, 68, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	81, 363
Hsp92II	CATG	2 cut(s)	63, 91
Kzo9I	GATC	2 cut(s)	46, 334
LmnI	GCTCC	2 cut(s)	25, 271
LpnPI	CCDG	8 cut(s)	54, 87, 123, 186, 297, 357, 375, 440
Lsp1109I	GCAGC	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	154, 386
MalI	GATC	2 cut(s)	48, 336
MboI	GATC	2 cut(s)	46, 334
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	111, 439
MlyI	GAGTC	2 cut(s)	289, 413
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	16, 76, 201, 363
MseI	TTAA	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeI	CATATG	2 cut(s)	317, 375
NdeII	GATC	2 cut(s)	46, 334
NlaIII	CATG	2 cut(s)	63, 91
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	154, 386
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	242, 245
PleI	GAGTC	2 cut(s)	288, 412
PpsI	GAGTC	2 cut(s)	288, 412
PpuMI	RGGWCCY	1 cut(s)	71
PscI	ACATGT	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	3 cut(s)	71, 116, 423
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	74, 252
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	2 cut(s)	241, 244
Sau3AI	GATC	2 cut(s)	46, 334
Sau96I	GGNCC	3 cut(s)	71, 116, 423
SchI	GAGTC	2 cut(s)	289, 413
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 73, 175, 193, 201, 306
SinI	GGWCC	3 cut(s)	71, 116, 423
SmlI	CTYRAG	2 cut(s)	29, 266
SmoI	CTYRAG	2 cut(s)	29, 266
Sse9I	AATT	2 cut(s)	111, 439
SsiI	CCGC	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	312
TasI	AATT	2 cut(s)	111, 439
TauI	GCSGC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	154, 386
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	2 cut(s)	154, 386
TspDTI	ATGAA	3 cut(s)	48, 83, 312
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	71, 116, 423
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.