Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017042

Physical Location & Seq

Genomic Coordinates Forward (+)

67021539 .. 67024350

Gene Structure 2812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCATCAAAATTAGAATCTGTTAACTCTCAGCTTGTTATTGCCAAAATGATCACTTCCAGCACATTAGAAGGAGATAGAATATTGAAGGAGCTCAGGGATTTGCAGAGAGATCCACCAACTTCATGTAGTGCAGGTCCTGTGGCTGAGGATATGTTTCATTGGCAAGCAACAATCATTGGTCCAAATGATAGTCCTTACTCAGGTGGTGTATTTGTTGTGACTATCCATTTTCCACCTGATTATCCCTTCAAACCTCCAAAGGTTGCCTTCAGGACCAAAGTGTTCCACCCAAATATAAACAGCAATGGTAACATCTGCTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATATCCAAGGTTTTGCTGTCGATATGTTCACTACTGACAGATCCGAACCCTGATGACCCACTTGTTCCTGAGATTGCTCATATGTGCAAGAGTGACAAAGTCAAATATGATGGACATTCAACATTGGCTTGGAATCAAAGAATGAACAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

171

Amino Acids

19.04

Weight (kDa)

6.18

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	27 - 158	7.6e-52	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16740
fragaria_vesca	FvH4_2g01240
malus_domestica	MD05G1121200.v1.1
prunus_persica	Prupe.8G165100_v2.0.a1
pyrus_communis	pycom05g11540 pycom10g10670
rosa_chinensis	RchiOBHm_Chr6g0251901
rosa_laevigata	RLG00000015421
rosa_multiflora	Rmu_ssc0000303.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216320
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014100
rosa_wichuraiana	Rw6G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	107, 395
AcuI	CTGAAG	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	88, 253, 480
AluBI	AGCT	2 cut(s)	34, 94
AluI	AGCT	2 cut(s)	34, 94
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	107, 395
AlwNI	CAGNNNCTG	2 cut(s)	140, 513
AspS9I	GGNCC	3 cut(s)	137, 182, 276
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	3 cut(s)	137, 182, 276
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	13, 464
BclI	TGATCA	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	125
Bme18I	GGWCC	3 cut(s)	137, 182, 276
BmgT120I	GGNCC	3 cut(s)	137, 182, 276
Bpu10I	CCTNAGC	2 cut(s)	95, 147
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse3DI	GCAATG	2 cut(s)	313, 347
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	313, 347
BseMII	CTCAG	5 cut(s)	44, 109, 138, 216, 420
BsgI	GTGCAG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	51, 112, 400
BspCNI	CTCAG	5 cut(s)	43, 108, 139, 215, 421
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	107, 395
BsrDI	GCAATG	2 cut(s)	313, 347
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	51, 112, 400
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	5 cut(s)	30, 95, 147, 202, 429
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	54, 115, 403
BstMBI	GATC	3 cut(s)	51, 112, 400
BstX2I	RGATCY	2 cut(s)	112, 400
BstYI	RGATCY	2 cut(s)	112, 400
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	2 cut(s)	140, 513
Cfr13I	GGNCC	3 cut(s)	137, 182, 276
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	4 cut(s)	34, 94, 146, 488
CviKI_1	RGCY	4 cut(s)	34, 94, 146, 488
DdeI	CTNAG	5 cut(s)	30, 95, 147, 202, 429
DpnI	GATC	3 cut(s)	53, 114, 402
DpnII	GATC	3 cut(s)	51, 112, 400
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	137, 182, 276
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	129
FaiI	YATR	8 cut(s)	127, 155, 299, 362, 385, 441, 443, 468
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	1 cut(s)	125
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	17, 346, 493
HpaI	GTTAAC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	25, 389
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	2 cut(s)	274, 428
Hpy8I	GTNNAC	2 cut(s)	25, 389
HpyAV	CCTTC	4 cut(s)	65, 82, 259, 280
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	106, 134, 447
HpyF3I	CTNAG	5 cut(s)	30, 95, 147, 202, 429
Hsp92II	CATG	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	51, 112, 400
LmnI	GCTCC	2 cut(s)	91, 337
MaeIII	GTNAC	4 cut(s)	220, 311, 452, 509
MalI	GATC	3 cut(s)	53, 114, 402
MboI	GATC	3 cut(s)	51, 112, 400
MflI	RGATCY	2 cut(s)	112, 400
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	2 cut(s)	142, 267
MseI	TTAA	1 cut(s)	24
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	3 cut(s)	51, 112, 400
NlaIII	CATG	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	220, 452
PfeI	GAWTC	2 cut(s)	17, 493
PflFI	GACNNNGTC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	137, 182, 276
PspPPI	RGGWCCY	1 cut(s)	137
PstNI	CAGNNNCTG	2 cut(s)	140, 513
PsuI	RGATCY	2 cut(s)	112, 400
PsyI	GACNNNGTC	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	51, 112, 400
Sau96I	GGNCC	3 cut(s)	137, 182, 276
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	36, 96, 139, 208, 241, 259, 267, 372
SinI	GGWCC	3 cut(s)	137, 182, 276
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	11
SspI	AATATT	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	17, 493
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	220, 452
Tsp45I	GTSAC	2 cut(s)	220, 452
TspDTI	ATGAA	2 cut(s)	114, 149
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	137, 182, 276
XagI	CCTNNNNNAGG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.