RchiOBHm_Chr6g0251901

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017042
Physical Location & Seq
Reverse (-)
7165564 .. 7166697
1134 bp
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UTR
Exon/CDS
Intron
PRQ22582

Sequence Viewer

Length: 447 bp
ATGGCTTCGAAGAGAATATTGAAGGAGCTCAGGGATTTGCAGAGAGATCCACCAACTTCATGTAGTGCAGGTCCTGTGGCCGAGGATATGTTTCATTGGCAAGCAACAATCATTGGTCCAAATGATAGTCCTTACTCAGGTGGTGTATTTGTTGTGACTATCCATTTTCCACCTGATTATCCCTTCAAACCTCCAAAGGTTGCCTTCAGGACCAAAGTGTTCCACCCAAATATAAACAGCAATGGTAACATCTGCTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATATCCAAGGTTTTGCTGTCGATATGTTCACTTCTGACAGATCCGAACCCTGATGACCCACTTGTTCCTGAGATTGCTCATATGTGCAAGAGTGACAAAGTCAAATATGAGTCAACGGCTCGGAGCTGGACCCATAAGTATGCCATGGGATAA

Protein Analysis

148

Amino Acids

16.54

Weight (kDa)

7.7

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 5 - 141 1.6e-53 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16740
fragaria_vesca FvH4_2g01240
malus_domestica MD05G1121200.v1.1
prunus_persica Prupe.8G165100_v2.0.a1
pyrus_communis pycom05g11540 pycom10g10670
rosa_chinensis RchiOBHm_Chr6g0251901
rosa_laevigata RLG00000015421
rosa_multiflora Rmu_ssc0000303.1_g000012
rosa_roxburghii Rroxscaffold_7G00216320
rosa_rugosa Rorug05G0504900
rosa_samantha Rh6BG014100
rosa_wichuraiana Rw6G001540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 41, 329
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 22, 187
AluBI AGCT 2 cut(s) 28, 420
AluI AGCT 2 cut(s) 28, 420
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 2 cut(s) 41, 329
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 1 cut(s) 78
AspS9I GGNCC 4 cut(s) 71, 116, 210, 423
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 4 cut(s) 71, 116, 210, 423
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 59
Bme18I GGWCC 4 cut(s) 71, 116, 210, 423
BmgT120I GGNCC 4 cut(s) 71, 116, 210, 423
BmiI GGNNCC 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 81, 300, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse3DI GCAATG 2 cut(s) 247, 281
BseDI CCNNGG 3 cut(s) 81, 300, 438
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 247, 281
BseMII CTCAG 3 cut(s) 43, 150, 354
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 46, 334
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 3 cut(s) 42, 149, 355
BspLI GGNNCC 1 cut(s) 425
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 41, 329
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 247, 281
BssECI CCNNGG 3 cut(s) 81, 300, 438
BssMI GATC 2 cut(s) 46, 334
BssT1I CCWWGG 2 cut(s) 300, 438
Bst6I CTCTTC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 29, 136, 363
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 135
BstKTI GATC 2 cut(s) 49, 337
BstMBI GATC 2 cut(s) 46, 334
BstX2I RGATCY 2 cut(s) 46, 334
BstYI RGATCY 2 cut(s) 46, 334
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 4 cut(s) 71, 116, 210, 423
CviAII CATG 2 cut(s) 60, 439
CviJI RGCY 5 cut(s) 5, 28, 80, 413, 420
CviKI_1 RGCY 5 cut(s) 5, 28, 80, 413, 420
DdeI CTNAG 3 cut(s) 29, 136, 363
DpnI GATC 2 cut(s) 48, 336
DpnII GATC 2 cut(s) 46, 334
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 300, 438
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 4 cut(s) 71, 116, 210, 423
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 300, 438
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 300, 438
FaeI CATG 2 cut(s) 63, 442
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 59, 438
FauNDI CATATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 2 cut(s) 63, 442
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 2 cut(s) 280, 404
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 323, 408
Hpy188I TCNGA 3 cut(s) 330, 339, 417
Hpy188III TCNNGA 2 cut(s) 208, 362
Hpy8I GTNNAC 2 cut(s) 323, 408
HpyAV CCTTC 3 cut(s) 16, 193, 214
HpyCH4V TGCA 3 cut(s) 40, 68, 381
HpyF3I CTNAG 3 cut(s) 29, 136, 363
Hsp92II CATG 2 cut(s) 63, 442
Kzo9I GATC 2 cut(s) 46, 334
LmnI GCTCC 3 cut(s) 25, 271, 417
MaeIII GTNAC 3 cut(s) 154, 245, 386
MalI GATC 2 cut(s) 48, 336
MboI GATC 2 cut(s) 46, 334
MboII GAAGA 1 cut(s) 22
MflI RGATCY 2 cut(s) 46, 334
MhlI GDGCHC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 289, 413
MnlI CCTC 2 cut(s) 76, 201
MslI CAYNNNNRTG 1 cut(s) 432
NcoI CCATGG 1 cut(s) 438
NdeI CATATG 1 cut(s) 375
NdeII GATC 2 cut(s) 46, 334
NlaIII CATG 2 cut(s) 63, 442
NlaIV GGNNCC 1 cut(s) 425
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 154, 386
NspV TTCGAA 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 392
PleI GAGTC 2 cut(s) 288, 412
PpsI GAGTC 2 cut(s) 288, 412
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 4 cut(s) 71, 116, 210, 423
PspPPI RGGWCCY 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 46, 334
PsyI GACNNNGTC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 46, 334
Sau96I GGNCC 4 cut(s) 71, 116, 210, 423
SchI GAGTC 2 cut(s) 289, 413
SduI GDGCHC 1 cut(s) 30
SetI ASST 8 cut(s) 30, 73, 142, 175, 193, 201, 306, 422
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 4 cut(s) 71, 116, 210, 423
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SspI AATATT 1 cut(s) 18
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 2 cut(s) 300, 438
TaqI TCGA 2 cut(s) 8, 314
TseFI GTSAC 2 cut(s) 154, 386
Tsp45I GTSAC 2 cut(s) 154, 386
TspDTI ATGAA 2 cut(s) 48, 83
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 71, 116, 210, 423
XagI CCTNNNNNAGG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.