Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0017042

Physical Location & Seq

Genomic Coordinates Forward (+)

17181042 .. 17182477

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTTTCCTTAAAAAACTTAGCCTTCTACTTAAATTCTTACTCAAAACCAGGAAGCTTCATCTTTGAAACTGCTTCAATGGCCTCAAAGAGAATATTGAAGGAGCTCAAGGACTTGCAGAGAGATCCACCAACTTCATGCAGTGCAGGTCCTGTGGCTGAGGACATGTTCCATTGGCAAGCAACAATCATTGGTCCAAATGACAGTCCCTATTCAGGGGGTGTGTTCCTTGTAACCATCCATTTTCCACCTGATTATCCTTTCAAACCTCCAAAGGTTGCCTTCAGGACCAAAGTGTTCCATCCAAATATAAACAGCAATGGCAATATCTGTTTGGACATTCTCAAGGAGCAATGGAGTCCAGCACTCACCATATCCAAGGTTTTACTGTCGATATGTTCTCTTTTGACCGACCCGAACCCTGATGACCCTCTTGTTCCGGAAATTGCTCATATGTGCAAGACTGACAAAGTCAAATATGAGTCAACAGCTCGGAGCTGGACCCAGAAGTATGCCATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

175

Amino Acids

19.47

Weight (kDa)

8.3

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16740
fragaria_vesca	FvH4_2g01240
malus_domestica	MD05G1121200.v1.1
prunus_persica	Prupe.8G165100_v2.0.a1
pyrus_communis	pycom05g11540 pycom10g10670
rosa_chinensis	RchiOBHm_Chr6g0251901
rosa_laevigata	RLG00000015421
rosa_multiflora	Rmu_ssc0000303.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216320
rosa_rugosa	Rorug05G0504900
rosa_samantha	Rh6BG014100
rosa_wichuraiana	Rw6G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	439
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	215, 216
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	68, 78, 100, 265
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	4 cut(s)	57, 106, 491, 498
AluI	AGCT	4 cut(s)	57, 106, 491, 498
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	149, 194, 288, 501
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	4 cut(s)	149, 194, 288, 501
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	245, 309
BciT130I	CCWGG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	4 cut(s)	149, 194, 288, 501
BmgT120I	GGNCC	4 cut(s)	149, 194, 288, 501
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	92, 329
BsaJI	CCNNGG	2 cut(s)	378, 516
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 216
Bse3DI	GCAATG	2 cut(s)	325, 359
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	378, 516
BseGI	GGATG	2 cut(s)	237, 301
BseLI	CCNNNNNNNGG	2 cut(s)	215, 216
BseMI	GCAATG	2 cut(s)	325, 359
BseMII	CTCAG	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	215, 216
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	516
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	503
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	325, 359
BssECI	CCNNGG	2 cut(s)	378, 516
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	378, 516
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	206, 390
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	19, 159
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	237, 301
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	237, 301
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	4 cut(s)	149, 194, 288, 501
CviAII	CATG	3 cut(s)	138, 166, 517
CviJI	RGCY	8 cut(s)	23, 57, 83, 106, 158, 491, 498, 522
CviKI_1	RGCY	8 cut(s)	23, 57, 83, 106, 158, 491, 498, 522
DdeI	CTNAG	2 cut(s)	19, 159
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	378, 516
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	4 cut(s)	149, 194, 288, 501
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	378, 516
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	378, 516
FaeI	CATG	3 cut(s)	141, 169, 520
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	137, 165, 516
FauNDI	CATATG	1 cut(s)	453
FokI	GGATG	2 cut(s)	224, 288
FriOI	GRGCYC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	3 cut(s)	141, 169, 520
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	358, 482
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	2 cut(s)	286, 440
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	34, 94, 292
HpyCH4III	ACNGT	2 cut(s)	206, 390
HpyCH4V	TGCA	4 cut(s)	118, 141, 146, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	19, 159
Hsp92II	CATG	3 cut(s)	141, 169, 520
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	3 cut(s)	103, 349, 495
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	34, 444
MlyI	GAGTC	2 cut(s)	367, 491
MnlI	CCTC	4 cut(s)	94, 154, 279, 441
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	2 cut(s)	11, 32
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	141, 169, 520
NlaIV	GGNNCC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	169
PciI	ACATGT	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	470
PleI	GAGTC	2 cut(s)	366, 490
PpsI	GAGTC	2 cut(s)	366, 490
PpuMI	RGGWCCY	1 cut(s)	149
PscI	ACATGT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	4 cut(s)	149, 194, 288, 501
PspPPI	RGGWCCY	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	11, 32
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	4 cut(s)	149, 194, 288, 501
SchI	GAGTC	2 cut(s)	367, 491
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	9 cut(s)	59, 108, 151, 253, 271, 279, 384, 493, 500
SinI	GGWCC	4 cut(s)	149, 194, 288, 501
SmlI	CTYRAG	2 cut(s)	107, 344
SmoI	CTYRAG	2 cut(s)	107, 344
Sse9I	AATT	2 cut(s)	34, 444
SspI	AATATT	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	378, 516
TaaI	ACNGT	2 cut(s)	206, 390
TaqI	TCGA	1 cut(s)	392
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	2 cut(s)	34, 444
Tru1I	TTAA	2 cut(s)	11, 32
Tru9I	TTAA	2 cut(s)	11, 32
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	49, 126
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	4 cut(s)	149, 194, 288, 501
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.