Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009925

Physical Location & Seq

Genomic Coordinates Reverse (-)

1986568 .. 1989479

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02490.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGTCCAGCGTCGAAGTGAATCAACGCATCGCAAGGCTCTCAGCTCATCTATACCCTTCAAATTTCCAGATGGAGGACAGCAGTTCTGCTGTGAGAAGAGCTGATTGCAGAGCCAAAGGAGGAGCACCTGGTTTTAAAGTGGCTATTTTGGGTGCTGCTGGAGGCATCGGACAACCTCTTGCAATGCTCATGAAAATGAATCCATTGGTCTCAGTTCTTCATCTCTATGATGTCGTCAATTCCCCCGGCGTCACAGCTGATATTAGTCACATGGACACTGGTGCTGTGGTGCGCGGTTTCTTGGGGCAGGCACAGCTTGACAATGCTCTCACAGGTGTTGACCTTGTGATCATACCTGCTGGTGTTCCAAGGAAGCCTGGAATGACAAGGGATGATCTTTTCAAGATCAATGCTGGAATTGTTAGAACTCTTTGTGAAGGAATTGCAAGGTGCTGCCCTAGAGCAATTGTCAACTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATAGCAGCTGAGGTTTTCAAGAAAGCTGGTACTTACGATCCAAAGCGGCTGCTAGGAGTTACAATGCTTGATGTCGTTAGGGCAAACACTTTCGTTGCTGAAGTTCTGGGACTTGATCCTAGAGAAGTTGATGTTCCGGTTGTGGGAGGCCATGCAGGAGTGACCATTTTGCCCCTTCTGTCACAGGTCAAGCCTCCTTGCTCCTTCACTAAAGAAGAAACAGAATACTTGACTGATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAGGCTGGGACTGGCTCGGCAACATTATCAATGGCTTATGCAGCTGTCAAGTTTGCGGATGCATGCCTTCGCGGCCTGAGAGGAGATGCTGGTGTTGTGGAATGCTCTTTTGTTGCATCTCAGGTTACAGAACTTCCTTTCTTTGCAACCAAGGTACGGCTTGGCCGCAATGGTGCAGAGGAAGTCTACCAACTTGGGCCCCTGAACGAGTATGAGAGGATCGGTTTAGAGAAGGCAAAAAGAGAGTTGGCAGGAAGCATCGAAAAGGGTGTTTCATTCATCAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0009514 GO:0009894 GO:0010565 GO:0019216 GO:0019217 GO:0019222 GO:0031323 GO:0031329 GO:0031998 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046320 GO:0050789 GO:0050794 GO:0050994 GO:0062012 GO:0065007 GO:0080090 GO:0080093

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

358

Amino Acids

37.85

Weight (kDa)

8.41

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	47 - 189	1.4e-45	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	191 - 306	2.2e-33	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09660 AT5G09660 AT5G09660 AT5G09660
fragaria_vesca	FvH4_2g02490 FvH4_2g02490
malus_domestica	MD05G1112700.v1.1
prunus_persica	Prupe.8G157300_v2.0.a1
pyrus_communis	pycom05g10810 pycom10g09980
rosa_chinensis	RchiOBHm_Chr6g0246321
rosa_laevigata	RLG00000015263
rosa_multiflora	Rmu_sc0001066.1_g000009
rosa_roxburghii	Rroxscaffold_7G00214680
rosa_rugosa	Rorug05G0520300.1
rosa_samantha	Rh6AG034500 Rh6BG029600 Rh6CG030000 Rh6DG028900
rosa_wichuraiana	Rw6G002790 Rw6G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	2 cut(s)	297, 855
AciI	CCGC	5 cut(s)	297, 556, 839, 855, 949
AclWI	GGATC	3 cut(s)	542, 620, 1010
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	5, 252
AfaI	GTAC	2 cut(s)	541, 939
AfiI	CCNNNNNNNGG	3 cut(s)	76, 653, 939
AgsI	TTSAA	4 cut(s)	63, 406, 529, 755
AjnI	CCWGG	2 cut(s)	130, 379
AluBI	AGCT	7 cut(s)	47, 104, 260, 319, 518, 536, 827
AluI	AGCT	7 cut(s)	47, 104, 260, 319, 518, 536, 827
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	542, 620, 1010
AoxI	GGCC	4 cut(s)	658, 856, 946, 980
ApaI	GGGCCC	1 cut(s)	984
ApeKI	GCWGC	5 cut(s)	158, 456, 515, 559, 824
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	980, 981
AsuC2I	CCSGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	984
BanII	GRGCYC	1 cut(s)	984
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	145, 443, 527, 546, 836
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	956
BciT130I	CCWGG	2 cut(s)	132, 381
BclI	TGATCA	2 cut(s)	351, 480
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	462, 563, 630
BfmI	CTRYAG	2 cut(s)	501, 510
BfuAI	ACCTGC	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	855
BisI	GCNGC	8 cut(s)	159, 457, 516, 557, 560, 825, 856, 949
BlsI	GCNGC	8 cut(s)	160, 458, 517, 558, 561, 826, 857, 950
Bme1390I	CCNGG	3 cut(s)	132, 249, 381
BmgT120I	GGNCC	2 cut(s)	980, 981
BmiI	GGNNCC	2 cut(s)	982, 983
BmrFI	CCNGG	3 cut(s)	132, 249, 381
BmsI	GCATC	6 cut(s)	39, 177, 832, 859, 908, 1050
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	5, 252
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	247, 371, 933
BsaWI	WCCGGW	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 653, 939
Bse1I	ACTGG	3 cut(s)	286, 491, 799
Bse3DI	GCAATG	2 cut(s)	192, 958
BseBI	CCWGG	2 cut(s)	132, 381
BseDI	CCNNGG	3 cut(s)	247, 371, 933
BseGI	GGATG	2 cut(s)	400, 847
BseLI	CCNNNNNNNGG	3 cut(s)	76, 653, 939
BseMI	GCAATG	2 cut(s)	192, 958
BseMII	CTCAG	5 cut(s)	57, 228, 510, 851, 917
BseNI	ACTGG	3 cut(s)	286, 491, 799
BseRI	GAGGAG	2 cut(s)	138, 879
BseSI	GKGCMC	1 cut(s)	984
BseXI	GCAGC	5 cut(s)	145, 443, 527, 546, 836
BseYI	CCCAGC	1 cut(s)	788
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	2 cut(s)	297, 855
BshFI	GGCC	4 cut(s)	660, 858, 948, 982
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	249, 647
BslFI	GGGAC	2 cut(s)	633, 805
BslI	CCNNNNNNNGG	3 cut(s)	76, 653, 939
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	633, 805
BsmI	GAATGC	2 cut(s)	750, 890
BsnI	GGCC	4 cut(s)	660, 858, 948, 982
Bso31I	GGTCTC	1 cut(s)	217
Bsp120I	GGGCCC	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	130, 984
Bsp143I	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
BspACI	CCGC	5 cut(s)	297, 556, 839, 855, 949
BspANI	GGCC	4 cut(s)	660, 858, 948, 982
BspCNI	CTCAG	5 cut(s)	56, 227, 511, 852, 916
BspFNI	CGCG	2 cut(s)	297, 855
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	982, 983
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	3 cut(s)	542, 620, 1010
BspQI	GCTCTTC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	192, 958
BsrI	ACTGG	3 cut(s)	286, 491, 799
BssECI	CCNNGG	3 cut(s)	247, 371, 933
BssMI	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
BssNI	GRCGYC	2 cut(s)	5, 252
BssT1I	CCWWGG	2 cut(s)	371, 933
Bst2UI	CCWGG	2 cut(s)	132, 381
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	2 cut(s)	5, 252
BstC8I	GCNNGC	2 cut(s)	312, 847
BstDEI	CTNAG	5 cut(s)	43, 214, 519, 860, 903
BstF5I	GGATG	2 cut(s)	400, 847
BstFNI	CGCG	2 cut(s)	297, 855
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	8 cut(s)	354, 400, 411, 483, 550, 628, 748, 1005
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 824, 855
BstNI	CCWGG	2 cut(s)	132, 381
BstNSI	RCATGY	1 cut(s)	849
BstSCI	CCNGG	3 cut(s)	130, 247, 379
BstSFI	CTRYAG	2 cut(s)	501, 510
BstSLI	GKGCMC	1 cut(s)	984
BstUI	CGCG	2 cut(s)	297, 855
BstV1I	GCAGC	5 cut(s)	145, 443, 527, 546, 836
BsuRI	GGCC	4 cut(s)	660, 858, 948, 982
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	400, 847
BtsIMutI	CAGTG	2 cut(s)	279, 498
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	312, 847
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	980, 981
CseI	GACGC	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	540, 938
CviAII	CATG	4 cut(s)	193, 274, 662, 846
CviQI	GTAC	2 cut(s)	540, 938
DdeI	CTNAG	5 cut(s)	43, 214, 519, 860, 903
DpnI	GATC	8 cut(s)	353, 399, 410, 482, 549, 627, 747, 1004
DpnII	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
DraI	TTTAAA	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	371, 933
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	981
EcoRII	CCWGG	2 cut(s)	130, 379
EcoT14I	CCWWGG	2 cut(s)	371, 933
EcoT22I	ATGCAT	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	2 cut(s)	371, 933
FaeI	CATG	4 cut(s)	196, 277, 665, 849
FaqI	GGGAC	2 cut(s)	633, 805
FatI	CATG	4 cut(s)	192, 273, 661, 845
FbaI	TGATCA	2 cut(s)	351, 480
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	8 cut(s)	159, 457, 516, 557, 560, 825, 856, 949
FokI	GGATG	2 cut(s)	407, 854
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	8 cut(s)	159, 457, 516, 557, 560, 825, 856, 949
FspBI	CTAG	3 cut(s)	462, 563, 630
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	8 cut(s)	159, 457, 516, 557, 560, 825, 856, 949
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	660, 858, 948, 982
HapII	CCGG	2 cut(s)	249, 647
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	2 cut(s)	5, 252
Hin1II	CATG	4 cut(s)	196, 277, 665, 849
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	343, 475
HindII	GTYRAC	2 cut(s)	343, 475
HinfI	GANTC	2 cut(s)	22, 202
HpaII	CCGG	2 cut(s)	249, 647
Hpy166II	GTNNAC	4 cut(s)	343, 475, 496, 970
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	5 cut(s)	70, 193, 406, 529, 1066
Hpy8I	GTNNAC	4 cut(s)	343, 475, 496, 970
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	6 cut(s)	69, 434, 695, 724, 860, 1009
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	9 cut(s)	111, 185, 449, 665, 824, 845, 899, 929, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 824, 855
HpyF3I	CTNAG	5 cut(s)	43, 214, 519, 860, 903
Hsp92I	GRCGYC	2 cut(s)	5, 252
Hsp92II	CATG	4 cut(s)	196, 277, 665, 849
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	2 cut(s)	351, 480
Kzo9I	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	125, 716
Lsp1109I	GCAGC	5 cut(s)	145, 443, 527, 546, 836
LweI	GCATC	6 cut(s)	39, 177, 832, 859, 908, 1050
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	3 cut(s)	462, 563, 630
MaeIII	GTNAC	6 cut(s)	253, 269, 568, 670, 690, 907
MalI	GATC	8 cut(s)	353, 399, 410, 482, 549, 627, 747, 1004
MboI	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
MboII	GAAGA	3 cut(s)	111, 212, 737
MfeI	CAATTG	1 cut(s)	468
MhlI	GDGCHC	2 cut(s)	130, 984
MluCI	AATT	5 cut(s)	64, 241, 420, 444, 468
Mph1103I	ATGCAT	1 cut(s)	847
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	197, 228
MspA1I	CMGCKG	3 cut(s)	260, 518, 827
MspI	CCGG	2 cut(s)	249, 647
MspR9I	CCNGG	3 cut(s)	132, 249, 381
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	750, 890
MvaI	CCWGG	2 cut(s)	132, 381
MvnI	CGCG	2 cut(s)	297, 855
MwoI	GCNNNNNNNGC	3 cut(s)	316, 824, 855
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
NlaIII	CATG	4 cut(s)	196, 277, 665, 849
NlaIV	GGNNCC	2 cut(s)	982, 983
NmeAIII	GCCGAG	1 cut(s)	779
NmuCI	GTSAC	4 cut(s)	253, 269, 670, 690
NsiI	ATGCAT	1 cut(s)	847
NspI	RCATGY	1 cut(s)	849
PaeI	GCATGC	1 cut(s)	849
PagI	TCATGA	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	94
PctI	GAATGC	2 cut(s)	750, 890
PfeI	GAWTC	2 cut(s)	22, 202
PkrI	GCNGC	8 cut(s)	160, 458, 517, 558, 561, 826, 857, 950
Psp6I	CCWGG	2 cut(s)	130, 379
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	2 cut(s)	130, 379
PspN4I	GGNNCC	2 cut(s)	982, 983
PspOMI	GGGCCC	1 cut(s)	980
PspPI	GGNCC	2 cut(s)	980, 981
PvuII	CAGCTG	3 cut(s)	260, 518, 827
RsaI	GTAC	2 cut(s)	541, 939
RsaNI	GTAC	2 cut(s)	540, 938
RseI	CAYNNNNRTG	2 cut(s)	197, 228
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	8 cut(s)	159, 457, 516, 557, 560, 825, 856, 949
Sau3AI	GATC	8 cut(s)	351, 397, 408, 480, 547, 625, 745, 1002
Sau96I	GGNCC	2 cut(s)	980, 981
ScrFI	CCNGG	3 cut(s)	132, 249, 381
SduI	GDGCHC	2 cut(s)	130, 984
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	6 cut(s)	39, 177, 832, 859, 908, 1050
SfcI	CTRYAG	2 cut(s)	501, 510
SmiMI	CAYNNNNRTG	2 cut(s)	197, 228
SphI	GCATGC	1 cut(s)	849
Sse9I	AATT	5 cut(s)	64, 241, 420, 444, 468
SsiI	CCGC	5 cut(s)	297, 556, 839, 855, 949
SspMI	CTAG	3 cut(s)	462, 563, 630
StyD4I	CCNGG	3 cut(s)	130, 247, 379
StyI	CCWWGG	2 cut(s)	371, 933
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	15, 1044
TasI	AATT	5 cut(s)	64, 241, 420, 444, 468
TauI	GCSGC	3 cut(s)	559, 858, 951
TfiI	GAWTC	2 cut(s)	22, 202
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	286, 498
TseFI	GTSAC	4 cut(s)	253, 269, 670, 690
TseI	GCWGC	5 cut(s)	158, 456, 515, 559, 824
Tsp45I	GTSAC	4 cut(s)	253, 269, 670, 690
TspDTI	ATGAA	5 cut(s)	209, 212, 215, 1047, 1051
TspRI	CASTG	2 cut(s)	286, 498
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	849
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	3 cut(s)	462, 563, 630
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.