Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009925

Physical Location & Seq

Genomic Coordinates Forward (+)

13227183 .. 13229657

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAGAGCCAAGCCACATCAAGCCACATTTGAGAAAATTGGATAGGATCTCAGCTCATGGACGCATTGCAAGGATCTCAGCTCATCTGTTTCCTCCAAATTCCCAGGTGGAGGATGGTTCTACTTTGAGTAGAACTGACTGCAGAGCCAAGGGCGGAGCACCGGGCTTTAAAGTGGCAATTGTGGGTGCTGCTGGACGCATTGGCCAACCTCTTGCAATGCTGATGAAGATGAACCCACTGGTTTCAGTTCTTCATCTCTATGACGTTGTTAATGCCCCCGGTGTCACGCTGACATTAGTCACATGGACACCGGTTGCTGTGGTGTGCGGTTTCTTAGGGCAGCCACAGCTGGAGAGCGCTCTCACGGGCATAGACCTTGTGATCATACCCACCGTTGTTCCAAGGAAGCCTGGAATGACAAGGGACGATCTCTTCAACATCAACGCCGGAATTGTCAGGACCATCTGTGAAGGCATTGCAAAAGCCTGTCCTAAGGCAGTTGTTAACTTAATCGGTAATCCAGTGAACTCTACAGTTCCTATTGCAGCAGAGGTTTTCAAGAAAGCCGGCACTTATGACCCAAAGCGACTTCTAGGAGTCACAATGCTCGATGTTGTGAGAGCAAATACTTTTGTTGCGGAAGTTCTTGGACTTGATCCTAGGGAAGTTGATGTTCCAGTTATTGGTGGTCATGCAGGAGTGACCATTTTGCCGCTTCTGTCACAGGTCAAGCCTCCTTGCTTCTTCACCAAGGAAGAAACAGAATACCTAACAAACCGGATTCAAAACGGTGGAACAGAAGTTGTTGAGGCAAAAGCTAGGGCTGGTTCGGCAACACTGTCAATGGCATATGTAGCAGTGGAATTTGCGTATGCATGCCTCCGTGGCTTGAGAGGAGATGCTGGTGTTGTTGAATGCACTTTTGTTGCCTCTGAGGTAACCGAACTTCCTTTCTTCGTAACCAAGGTTCGGCTTGGTCGTAGCGGAGCCGAGGAAATCTACCAACTCGGGCCTCTGAATGAGTATGAGAGGGTTCATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0009514 GO:0009894 GO:0010565 GO:0019216 GO:0019217 GO:0019222 GO:0031323 GO:0031329 GO:0031998 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046320 GO:0050789 GO:0050794 GO:0050994 GO:0062012 GO:0065007 GO:0080090 GO:0080093

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

349

Amino Acids

37.18

Weight (kDa)

8.43

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09660 AT5G09660 AT5G09660 AT5G09660
fragaria_vesca	FvH4_2g02490 FvH4_2g02490
malus_domestica	MD05G1112700.v1.1
prunus_persica	Prupe.8G157300_v2.0.a1
pyrus_communis	pycom05g10810 pycom10g09980
rosa_chinensis	RchiOBHm_Chr6g0246321
rosa_laevigata	RLG00000015263
rosa_multiflora	Rmu_sc0001066.1_g000009
rosa_roxburghii	Rroxscaffold_7G00214680
rosa_rugosa	Rorug05G0520300.1
rosa_samantha	Rh6AG034500 Rh6BG029600 Rh6CG030000 Rh6DG028900
rosa_wichuraiana	Rw6G002790 Rw6G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	686
AciI	CCGC	5 cut(s)	156, 330, 641, 716, 987
AclWI	GGATC	3 cut(s)	56, 83, 653
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	100, 866
AfeI	AGCGCT	1 cut(s)	361
AfiI	CCNNNNNNNGG	3 cut(s)	112, 686, 972
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	439, 562, 788, 917
AjnI	CCWGG	2 cut(s)	105, 412
AluBI	AGCT	4 cut(s)	56, 83, 352, 821
AluI	AGCT	4 cut(s)	56, 83, 352, 821
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	3 cut(s)	56, 83, 653
Ama87I	CYCGRG	1 cut(s)	1010
Aor51HI	AGCGCT	1 cut(s)	361
AoxI	GGCC	2 cut(s)	205, 1013
ApeKI	GCWGC	3 cut(s)	191, 343, 548
ApoI	RAATTY	2 cut(s)	100, 866
AsiGI	ACCGGT	1 cut(s)	313
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	462, 1013
AsuC2I	CCSGG	2 cut(s)	165, 282
AsuHPI	GGTGA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	462
AvrII	CCTAGG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	933, 965
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	178, 355, 560
BccI	CCATC	2 cut(s)	110, 473
BciT130I	CCWGG	2 cut(s)	107, 414
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	165, 282
BfaI	CTAG	3 cut(s)	596, 663, 822
BfmI	CTRYAG	2 cut(s)	142, 534
BfoI	RGCGCY	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	888
BisI	GCNGC	4 cut(s)	192, 344, 549, 716
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	4 cut(s)	193, 345, 550, 717
Bme1390I	CCNGG	4 cut(s)	107, 165, 282, 414
Bme18I	GGWCC	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	462, 1013
BmiI	GGNNCC	1 cut(s)	991
BmrFI	CCNGG	4 cut(s)	107, 165, 282, 414
BmsI	GCATC	1 cut(s)	892
BoxI	GACNNNNGTC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	913
BpuMI	CCSGG	2 cut(s)	165, 282
BsaJI	CCNNGG	9 cut(s)	105, 150, 280, 404, 662, 753, 886, 966, 993
BsaWI	WCCGGW	2 cut(s)	313, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 686, 972
Bse118I	RCCGGY	2 cut(s)	313, 569
Bse1I	ACTGG	3 cut(s)	246, 524, 680
Bse21I	CCTNAGG	1 cut(s)	495
Bse3DI	GCAATG	3 cut(s)	66, 225, 477
BseBI	CCWGG	2 cut(s)	107, 414
BseDI	CCNNGG	9 cut(s)	105, 150, 280, 404, 662, 753, 886, 966, 993
BseGI	GGATG	2 cut(s)	121, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	112, 686, 972
BseMI	GCAATG	3 cut(s)	66, 225, 477
BseMII	CTCAG	3 cut(s)	66, 93, 927
BseNI	ACTGG	3 cut(s)	246, 524, 680
BseRI	GAGGAG	1 cut(s)	912
BseXI	GCAGC	3 cut(s)	178, 355, 560
BshFI	GGCC	2 cut(s)	207, 1015
BshTI	ACCGGT	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	1010
BsiSI	CCGG	6 cut(s)	164, 282, 314, 450, 570, 781
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	112, 686, 972
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	2 cut(s)	207, 1015
BsoBI	CYCGRG	1 cut(s)	1010
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	5 cut(s)	48, 75, 384, 430, 658
BspACI	CCGC	5 cut(s)	156, 330, 641, 716, 987
BspANI	GGCC	2 cut(s)	207, 1015
BspCNI	CTCAG	3 cut(s)	65, 92, 928
BspLI	GGNNCC	1 cut(s)	991
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	3 cut(s)	56, 83, 653
BsrDI	GCAATG	3 cut(s)	66, 225, 477
BsrFI	RCCGGY	2 cut(s)	313, 569
BsrI	ACTGG	3 cut(s)	246, 524, 680
BssAI	RCCGGY	2 cut(s)	313, 569
BssECI	CCNNGG	9 cut(s)	105, 150, 280, 404, 662, 753, 886, 966, 993
BssMI	GATC	5 cut(s)	48, 75, 384, 430, 658
BssT1I	CCWWGG	5 cut(s)	150, 404, 662, 753, 966
Bst2UI	CCWGG	2 cut(s)	107, 414
Bst4CI	ACNGT	4 cut(s)	397, 538, 794, 843
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	571, 880
BstDEI	CTNAG	5 cut(s)	52, 79, 337, 495, 936
BstDSI	CCRYGG	1 cut(s)	886
BstEII	GGTNACC	1 cut(s)	940
BstF5I	GGATG	2 cut(s)	121, 1039
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	5 cut(s)	51, 78, 387, 433, 661
BstMBI	GATC	5 cut(s)	48, 75, 384, 430, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 833, 857, 888
BstNI	CCWGG	2 cut(s)	107, 414
BstNSI	RCATGY	1 cut(s)	882
BstPAI	GACNNNNGTC	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	940
BstSCI	CCNGG	4 cut(s)	105, 163, 280, 412
BstSFI	CTRYAG	2 cut(s)	142, 534
BstV1I	GCAGC	3 cut(s)	178, 355, 560
BstX2I	RGATCY	2 cut(s)	48, 75
BstYI	RGATCY	2 cut(s)	48, 75
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	207, 1015
BtgI	CCRYGG	1 cut(s)	886
BtsCI	GGATG	2 cut(s)	121, 1039
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	4 cut(s)	239, 531, 839, 867
Cac8I	GCNNGC	2 cut(s)	571, 880
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	2 cut(s)	313, 569
Cfr13I	GGNCC	2 cut(s)	462, 1013
CseI	GACGC	2 cut(s)	72, 207
CspAI	ACCGGT	1 cut(s)	313
CviAII	CATG	4 cut(s)	59, 306, 695, 879
DdeI	CTNAG	5 cut(s)	52, 79, 337, 495, 936
DpnI	GATC	5 cut(s)	50, 77, 386, 432, 660
DpnII	GATC	5 cut(s)	48, 75, 384, 430, 658
DraI	TTTAAA	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	5 cut(s)	150, 404, 662, 753, 966
Eco47I	GGWCC	1 cut(s)	462
Eco47III	AGCGCT	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	1010
Eco91I	GGTNACC	1 cut(s)	940
EcoO65I	GGTNACC	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	105, 412
EcoT14I	CCWWGG	5 cut(s)	150, 404, 662, 753, 966
EcoT22I	ATGCAT	1 cut(s)	880
ErhI	CCWWGG	5 cut(s)	150, 404, 662, 753, 966
FaeI	CATG	4 cut(s)	62, 309, 698, 882
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	58, 305, 694, 878
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	192, 344, 549, 716
FokI	GGATG	2 cut(s)	128, 1026
Fsp4HI	GCNGC	4 cut(s)	192, 344, 549, 716
FspBI	CTAG	3 cut(s)	596, 663, 822
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	4 cut(s)	192, 344, 549, 716
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	207, 1015
HapII	CCGG	6 cut(s)	164, 282, 314, 450, 570, 781
HgaI	GACGC	2 cut(s)	72, 207
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	62, 309, 698, 882
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	600, 784
HpaI	GTTAAC	1 cut(s)	508
HpaII	CCGG	6 cut(s)	164, 282, 314, 450, 570, 781
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	508, 529
Hpy188I	TCNGA	2 cut(s)	937, 1020
Hpy188III	TCNNGA	2 cut(s)	460, 562
Hpy8I	GTNNAC	2 cut(s)	508, 529
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	4 cut(s)	397, 538, 794, 843
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	8 cut(s)	71, 144, 218, 482, 548, 698, 878, 921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 833, 857, 888
HpyF3I	CTNAG	5 cut(s)	52, 79, 337, 495, 936
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	62, 309, 698, 882
HspAI	GCGC	1 cut(s)	360
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	384
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	48, 75, 384, 430, 658
LmnI	GCTCC	2 cut(s)	158, 989
Lsp1109I	GCAGC	3 cut(s)	178, 355, 560
LweI	GCATC	1 cut(s)	892
MaeI	CTAG	3 cut(s)	596, 663, 822
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	7 cut(s)	286, 301, 601, 703, 723, 940, 961
MalI	GATC	5 cut(s)	50, 77, 386, 432, 660
MboI	GATC	5 cut(s)	48, 75, 384, 430, 658
MboII	GAAGA	6 cut(s)	241, 245, 427, 739, 770, 949
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	48, 75
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	38, 100, 180, 453, 866
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	880
MroNI	GCCGGC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	4 cut(s)	171, 273, 507, 512
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	6 cut(s)	164, 282, 314, 450, 570, 781
MspR9I	CCNGG	4 cut(s)	107, 165, 282, 414
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	2 cut(s)	107, 414
MwoI	GCNNNNNNNGC	4 cut(s)	349, 833, 857, 888
NaeI	GCCGGC	1 cut(s)	571
NciI	CCSGG	2 cut(s)	165, 282
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	5 cut(s)	48, 75, 384, 430, 658
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	4 cut(s)	62, 309, 698, 882
NlaIV	GGNNCC	1 cut(s)	991
NmeAIII	GCCGAG	1 cut(s)	1018
NmuCI	GTSAC	5 cut(s)	286, 301, 601, 703, 723
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	1 cut(s)	882
PaeI	GCATGC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PctI	GAATGC	1 cut(s)	923
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	784
PflMI	CCANNNNNTGG	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	193, 345, 550, 717
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PshAI	GACNNNNGTC	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	105, 412
PspEI	GGTNACC	1 cut(s)	940
PspGI	CCWGG	2 cut(s)	105, 412
PspN4I	GGNNCC	1 cut(s)	991
PspPI	GGNCC	2 cut(s)	462, 1013
PsrI	GAACNNNNNNTAC	2 cut(s)	954, 986
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	48, 75
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	171, 273, 507, 512
SatI	GCNGC	4 cut(s)	192, 344, 549, 716
Sau3AI	GATC	5 cut(s)	48, 75, 384, 430, 658
Sau96I	GGNCC	2 cut(s)	462, 1013
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	4 cut(s)	107, 165, 282, 414
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	892
SfcI	CTRYAG	2 cut(s)	142, 534
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	892
SmoI	CTYRAG	1 cut(s)	892
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	5 cut(s)	38, 100, 180, 453, 866
SsiI	CCGC	5 cut(s)	156, 330, 641, 716, 987
SspMI	CTAG	3 cut(s)	596, 663, 822
StyD4I	CCNGG	4 cut(s)	105, 163, 280, 412
StyI	CCWWGG	5 cut(s)	150, 404, 662, 753, 966
TaaI	ACNGT	4 cut(s)	397, 538, 794, 843
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	612
TasI	AATT	5 cut(s)	38, 100, 180, 453, 866
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	784
Tru1I	TTAA	4 cut(s)	171, 273, 507, 512
Tru9I	TTAA	4 cut(s)	171, 273, 507, 512
TscAI	CASTG	4 cut(s)	246, 531, 846, 867
TseFI	GTSAC	5 cut(s)	286, 301, 601, 703, 723
TseI	GCWGC	3 cut(s)	191, 343, 548
Tsp45I	GTSAC	5 cut(s)	286, 301, 601, 703, 723
TspDTI	ATGAA	4 cut(s)	242, 245, 248, 1028
TspGWI	ACGGA	2 cut(s)	875, 1032
TspRI	CASTG	4 cut(s)	246, 531, 846, 867
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	100, 866
XceI	RCATGY	1 cut(s)	882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	662
XspI	CTAG	3 cut(s)	596, 663, 822
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.