Prupe.8G157300_v2.0.a1

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
16777031 .. 16779447
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G157300.1

Sequence Viewer

Length: 1071 bp
ATGGAGCCAAGTGTGGAAGCTAATGGACGCATTGCAAGGATCTCAGCTCATCTGTTTCCACCAAATCTCCAGATGGAGGATGGTTCTGCTTTGAGAAGAGTTGATTGCAGAGCCAAAGGCGGGGCACCGGGTTTTAAAGTGGCGATTTTGGGTGCTGCCGGAGGCATTGGCCAACCTCTTGCAATGCTCATGAAAATTAACCCACTGGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCCCCGGGTGTCACAGCTGACATTAGTCACATGGACACTGGTGCTGTGGTGAGGGGTTTCTTAGGCCAGCCACAGCTTGAGAGTGCTCTCACAGGCATAGACCTTGTGATCATACCTGCCGGTGTTCCAAGGAAGCCAGGAATGACAAGGGATGATCTTTTCAACATTAATGCCGGAATTGTCAGGACCCTCTGTGAGGGAATTGCAAAGGCCTGCCCTAAGGCAATTGTCAACTTGATCAGTAATCCAGTGAACTCTACAGTTCCTATAGCAGCTGAGGTTTTCAAGAAGGCCGGAACTTATGACCCAAAGCGACTTCTAGGAGTTACGATGCTTGATGTTGTTAGAGCAAATACTTTCGTTGCCGAAGTTCTGGGACTTGATCCTAGGGAGGTTGATGTTCCAGTCGTTGGTGGTCATGCAGGAGTGACCATTTTGCCACTTCTGTCACAGGTCAAGCCTCCTTGCTCCTTCACTAAAGAAGAAACAGAATATCTGACAAACCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCTGGCTCCGCAACATTGTCAATGGCATATGCAGCTGTGAAGTTTGCGGATGCATGCCTTCGTGGCTTGAGAGGAGATGCCGGCGTTGTTGAATGCGCTTTTGTTGCTTCTGAGGTTACCGAACTTCCTTTCTTCGCAACCAAGGTACGGCTTGGTCGAAATGGAGCTGATGAAATCTACCAACTTGGACCTCTGAATGAGTATGAGAGGGTTGGTTTAGAGAAGGCAAAAAGGGAGTTAGCAGCAAGCATCCAGAAGGGGGTTTCTTTCATCAAGAAGTGA

Protein Analysis

357

Amino Acids

37.52

Weight (kDa)

8.15

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009925)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 650
AciI CCGC 4 cut(s) 120, 745, 798, 836
AclWI GGATC 2 cut(s) 47, 617
AcoI YGGCCR 1 cut(s) 169
AfaI GTAC 1 cut(s) 936
AfiI CCNNNNNNNGG 6 cut(s) 76, 120, 436, 650, 936, 1048
AgsI TTSAA 4 cut(s) 403, 526, 752, 881
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 8 cut(s) 20, 47, 257, 316, 515, 785, 824, 956
AluI AGCT 8 cut(s) 20, 47, 257, 316, 515, 785, 824, 956
Alw21I GWGCWC 1 cut(s) 328
AlwI GGATC 2 cut(s) 47, 617
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 4 cut(s) 169, 304, 450, 531
ApeKI GCWGC 4 cut(s) 155, 512, 821, 1031
AseI ATTAAT 1 cut(s) 408
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 2 cut(s) 426, 977
AsuC2I CCSGG 3 cut(s) 129, 245, 246
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 426, 977
AvrII CCTAGG 1 cut(s) 626
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 142, 524, 833, 1043
BccI CCATC 2 cut(s) 67, 74
BceAI ACGGC 1 cut(s) 953
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 2 cut(s) 348, 477
BcnI CCSGG 3 cut(s) 129, 245, 246
BfaI CTAG 2 cut(s) 560, 627
BfmI CTRYAG 2 cut(s) 498, 507
BfuAI ACCTGC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 852
BisI GCNGC 4 cut(s) 156, 513, 822, 1032
BlnI CCTAGG 1 cut(s) 626
BlsI GCNGC 4 cut(s) 157, 514, 823, 1033
Bme1390I CCNGG 4 cut(s) 129, 245, 246, 378
Bme18I GGWCC 2 cut(s) 426, 977
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 426, 977
BmiI GGNNCC 4 cut(s) 6, 126, 428, 796
BmrFI CCNGG 4 cut(s) 129, 245, 246, 378
BmsI GCATC 4 cut(s) 561, 829, 856, 1047
BoxI GACNNNNGTC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 338, 877
BpuMI CCSGG 3 cut(s) 129, 245, 246
BsaJI CCNNGG 5 cut(s) 243, 244, 368, 626, 930
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 120, 436, 650, 936, 1048
Bse118I RCCGGY 2 cut(s) 359, 869
Bse1I ACTGG 4 cut(s) 210, 283, 488, 644
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 2 cut(s) 30, 189
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 243, 244, 368, 626, 930
BseGI GGATG 4 cut(s) 85, 397, 844, 1038
BseLI CCNNNNNNNGG 6 cut(s) 76, 120, 436, 650, 936, 1048
BseMI GCAATG 2 cut(s) 30, 189
BseMII CTCAG 3 cut(s) 57, 507, 891
BseNI ACTGG 4 cut(s) 210, 283, 488, 644
BseRI GAGGAG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 4 cut(s) 142, 524, 833, 1043
BseYI CCCAGC 1 cut(s) 785
BshFI GGCC 4 cut(s) 171, 306, 452, 533
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 7 cut(s) 128, 159, 245, 360, 414, 534, 870
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 6 cut(s) 76, 120, 436, 650, 936, 1048
BsmFI GGGAC 1 cut(s) 630
BsmI GAATGC 2 cut(s) 747, 887
BsnI GGCC 4 cut(s) 171, 306, 452, 533
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 127, 328
Bsp143I GATC 5 cut(s) 39, 348, 394, 477, 622
BspACI CCGC 4 cut(s) 120, 745, 798, 836
BspANI GGCC 4 cut(s) 171, 306, 452, 533
BspCNI CTCAG 3 cut(s) 56, 508, 892
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 6, 126, 428, 796
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 2 cut(s) 47, 617
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 30, 189
BsrFI RCCGGY 2 cut(s) 359, 869
BsrI ACTGG 4 cut(s) 210, 283, 488, 644
BssAI RCCGGY 2 cut(s) 359, 869
BssECI CCNNGG 5 cut(s) 243, 244, 368, 626, 930
BssMI GATC 5 cut(s) 39, 348, 394, 477, 622
BssT1I CCWWGG 3 cut(s) 368, 626, 930
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 6 cut(s) 308, 454, 793, 844, 871, 1036
BstDEI CTNAG 5 cut(s) 43, 301, 459, 516, 900
BstEII GGTNACC 1 cut(s) 904
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 4 cut(s) 85, 397, 844, 1038
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 5 cut(s) 42, 351, 397, 480, 625
BstMBI GATC 5 cut(s) 39, 348, 394, 477, 622
BstMWI GCNNNNNNNGC 4 cut(s) 797, 821, 852, 893
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 846
BstPAI GACNNNNGTC 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 904
BstSCI CCNGG 4 cut(s) 127, 243, 244, 376
BstSFI CTRYAG 2 cut(s) 498, 507
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 4 cut(s) 142, 524, 833, 1043
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 4 cut(s) 171, 306, 452, 533
BtsCI GGATG 4 cut(s) 85, 397, 844, 1038
BtsIMutI CAGTG 3 cut(s) 203, 276, 495
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 6 cut(s) 308, 454, 793, 844, 871, 1036
CciI TCATGA 1 cut(s) 189
CfoI GCGC 1 cut(s) 887
Cfr10I RCCGGY 2 cut(s) 359, 869
Cfr13I GGNCC 2 cut(s) 426, 977
Cfr9I CCCGGG 1 cut(s) 244
CseI GACGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 935
CviAII CATG 4 cut(s) 190, 271, 659, 843
CviQI GTAC 1 cut(s) 935
DdeI CTNAG 5 cut(s) 43, 301, 459, 516, 900
DpnI GATC 5 cut(s) 41, 350, 396, 479, 624
DpnII GATC 5 cut(s) 39, 348, 394, 477, 622
DraI TTTAAA 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 368, 626, 930
Eco147I AGGCCT 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 426, 977
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 368, 626, 930
EcoT22I ATGCAT 1 cut(s) 844
ErhI CCWWGG 3 cut(s) 368, 626, 930
FaeI CATG 4 cut(s) 193, 274, 662, 846
FaqI GGGAC 1 cut(s) 630
FatI CATG 4 cut(s) 189, 270, 658, 842
FauI CCCGC 1 cut(s) 113
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 2 cut(s) 348, 477
Fnu4HI GCNGC 4 cut(s) 156, 513, 822, 1032
FokI GGATG 4 cut(s) 92, 404, 851, 1025
Fsp4HI GCNGC 4 cut(s) 156, 513, 822, 1032
FspBI CTAG 2 cut(s) 560, 627
GlaI GCGC 1 cut(s) 886
GluI GCNGC 4 cut(s) 156, 513, 822, 1032
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 4 cut(s) 171, 306, 452, 533
HapII CCGG 7 cut(s) 128, 159, 245, 360, 414, 534, 870
HgaI GACGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 887
Hin1II CATG 4 cut(s) 193, 274, 662, 846
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HpaII CCGG 7 cut(s) 128, 159, 245, 360, 414, 534, 870
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 472, 493
Hpy188I TCNGA 3 cut(s) 738, 901, 984
Hpy188III TCNNGA 6 cut(s) 70, 190, 424, 526, 1042, 1063
Hpy8I GTNNAC 2 cut(s) 472, 493
HpyAV CCTTC 5 cut(s) 523, 721, 857, 1006, 1039
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 7 cut(s) 35, 108, 182, 446, 662, 821, 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 797, 821, 852, 893
HpyF3I CTNAG 5 cut(s) 43, 301, 459, 516, 900
Hsp92II CATG 4 cut(s) 193, 274, 662, 846
HspAI GCGC 1 cut(s) 885
KroI GCCGGC 1 cut(s) 869
KroNI GCCGGC 1 cut(s) 871
Ksp22I TGATCA 2 cut(s) 348, 477
Kzo9I GATC 5 cut(s) 39, 348, 394, 477, 622
LmnI GCTCC 4 cut(s) 4, 713, 800, 953
Lsp1109I GCAGC 4 cut(s) 142, 524, 833, 1043
LweI GCATC 4 cut(s) 561, 829, 856, 1047
MaeI CTAG 2 cut(s) 560, 627
MaeIII GTNAC 6 cut(s) 250, 266, 565, 667, 687, 904
MalI GATC 5 cut(s) 41, 350, 396, 479, 624
MboI GATC 5 cut(s) 39, 348, 394, 477, 622
MboII GAAGA 4 cut(s) 108, 209, 734, 913
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 127, 328
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 4 cut(s) 195, 417, 441, 465
MluNI TGGCCA 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 844
MroNI GCCGGC 1 cut(s) 869
MscI TGGCCA 1 cut(s) 171
MseI TTAA 4 cut(s) 135, 198, 237, 408
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 3 cut(s) 257, 515, 824
MspI CCGG 7 cut(s) 128, 159, 245, 360, 414, 534, 870
MspR9I CCNGG 4 cut(s) 129, 245, 246, 378
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 747, 887
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 797, 821, 852, 893
NaeI GCCGGC 1 cut(s) 871
NciI CCSGG 3 cut(s) 129, 245, 246
NdeI CATATG 1 cut(s) 817
NdeII GATC 5 cut(s) 39, 348, 394, 477, 622
NgoMIV GCCGGC 1 cut(s) 869
NlaIII CATG 4 cut(s) 193, 274, 662, 846
NlaIV GGNNCC 4 cut(s) 6, 126, 428, 796
NmuCI GTSAC 4 cut(s) 250, 266, 667, 687
NsiI ATGCAT 1 cut(s) 844
NspI RCATGY 1 cut(s) 846
PaeI GCATGC 1 cut(s) 846
PagI TCATGA 1 cut(s) 189
PceI AGGCCT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 943
PctI GAATGC 2 cut(s) 747, 887
PdiI GCCGGC 1 cut(s) 871
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 4 cut(s) 157, 514, 823, 1033
PpuMI RGGWCCY 1 cut(s) 426
PshAI GACNNNNGTC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 376
PspEI GGTNACC 1 cut(s) 904
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 6, 126, 428, 796
PspPI GGNCC 2 cut(s) 426, 977
PspPPI RGGWCCY 1 cut(s) 426
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 3 cut(s) 257, 515, 824
RsaI GTAC 1 cut(s) 936
RsaNI GTAC 1 cut(s) 935
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 4 cut(s) 135, 198, 237, 408
SatI GCNGC 4 cut(s) 156, 513, 822, 1032
Sau3AI GATC 5 cut(s) 39, 348, 394, 477, 622
Sau96I GGNCC 2 cut(s) 426, 977
ScrFI CCNGG 4 cut(s) 129, 245, 246, 378
SduI GDGCHC 2 cut(s) 127, 328
SfaNI GCATC 4 cut(s) 561, 829, 856, 1047
SfcI CTRYAG 2 cut(s) 498, 507
SinI GGWCC 2 cut(s) 426, 977
SmaI CCCGGG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 317, 856
SmoI CTYRAG 2 cut(s) 317, 856
SphI GCATGC 1 cut(s) 846
Sse9I AATT 4 cut(s) 195, 417, 441, 465
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 4 cut(s) 120, 745, 798, 836
SspMI CTAG 2 cut(s) 560, 627
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 4 cut(s) 127, 243, 244, 376
StyI CCWWGG 3 cut(s) 368, 626, 930
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 946
TasI AATT 4 cut(s) 195, 417, 441, 465
Tru1I TTAA 4 cut(s) 135, 198, 237, 408
Tru9I TTAA 4 cut(s) 135, 198, 237, 408
TscAI CASTG 3 cut(s) 210, 283, 495
TseFI GTSAC 4 cut(s) 250, 266, 667, 687
TseI GCWGC 4 cut(s) 155, 512, 821, 1031
Tsp45I GTSAC 4 cut(s) 250, 266, 667, 687
TspDTI ATGAA 4 cut(s) 206, 209, 975, 1048
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 3 cut(s) 210, 283, 495
Van91I CCANNNNNTGG 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 426, 977
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 434
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmaI CCCGGG 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 2 cut(s) 560, 627
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.