FvH4_2g02970

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
2307809 .. 2309600
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02970.t1

Sequence Viewer

Length: 885 bp
ATGACTATTTGTCACAGAACTGTCATCTTTATAGGGATTCTTACTTTGATATCGACTCAGATTACAAGTGGTTCGGTTGTTTCAACAGGAGACTTCAATAAGGATTTTTTTGTGACATGGTCTCCAAGTCATGTAAATACTTCAGCTGATGGCAAGACAAGGAGTTTGAAGCTCGACCAAGAATCCGGTGCTGGTTTTGCTTCGAACCAGATGTTCTTGTTTGGACAGATTGACATGCAAATAAAGCTAGTACCAGGTCGTTCAGCAGGCACAGTCGTAGCTTATTATCTGACATCTGATCAACCTAAGCGTGATGAAGTAGACTTTGAGTTCCTTGGCAATGTGGAAGGCAAACCATATATCATCCAAACAAACATATTTGCCGATGGATTCGACAACCGTGAAGAGAGGATCAACCTCTGGTTTGATCCAACAAAGGACTTCCATACCTATTCCATATTATGGAACCTTCATCAAATTGTGTTTATGGTGGATTGGGTTCCCATCAGAGTATACAGAAACCATGCGGACAAGGGTGTGGCATATCCAAGGTGGCAGCCAATGAGCATCAAAACCAGCCTATGGAACGGCGACACCTGGGCTACAGGAGGTGGCCGTGATAAAATAGACTGGTCAAAAGGCCCCTTCATAGCTTCATTCAGAAACCACAAGATTGATGCATGTATTTGGGAAGGAAATGCTAGGTTTTGCAGGGCAGAGAGTCCTACAAATTGGTGGCACCAGAAAAAATACAGCACTTTAACAAGTGCACAGAGAAGATTGTTCAAATGGGTTAGGAAGTACCACATGATTTATGACTATTGCCAAGACAAGGAAAGGTTCCAAGGAAATCTTCCAAAGGAGTGTTTACTACCAAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

295

Amino Acids

34.14

Weight (kDa)

8.97

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 33 - 213 5.2e-60 Glycosyl hydrolases family 16
XET_C PF06955 241 - 289 1.4e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 738
AccB7I CCANNNNNTGG 2 cut(s) 462, 582
AccI GTMKAC 2 cut(s) 321, 513
AciI CCGC 1 cut(s) 527
AclWI GGATC 2 cut(s) 419, 422
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 252, 803
AfiI CCNNNNNNNGG 3 cut(s) 462, 582, 832
AgsI TTSAA 4 cut(s) 84, 97, 169, 787
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 253, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 837, 869
AluBI AGCT 5 cut(s) 146, 172, 247, 281, 653
AluI AGCT 5 cut(s) 146, 172, 247, 281, 653
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 2 cut(s) 84, 126
Alw44I GTGCAC 1 cut(s) 768
AlwI GGATC 2 cut(s) 419, 422
AoxI GGCC 2 cut(s) 613, 640
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AspS9I GGNCC 1 cut(s) 641
AsuII TTCGAA 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 1 cut(s) 568
BccI CCATC 3 cut(s) 143, 380, 512
BceAI ACGGC 2 cut(s) 600, 604
BciT130I CCWGG 2 cut(s) 255, 598
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 84, 126
BfaI CTAG 2 cut(s) 248, 702
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 1 cut(s) 557
BlsI GCNGC 1 cut(s) 558
Bme1390I CCNGG 2 cut(s) 255, 598
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 5 cut(s) 467, 501, 643, 740, 842
BmrFI CCNGG 2 cut(s) 255, 598
BmsI GCATC 2 cut(s) 576, 667
Bpu10I CCTNAGC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 334, 548, 597, 844
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 582, 832
Bse1I ACTGG 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 255, 598
BseDI CCNNGG 4 cut(s) 334, 548, 597, 844
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 462, 582, 832
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 1 cut(s) 568
BshFI GGCC 2 cut(s) 615, 642
BshNI GGYRCC 1 cut(s) 738
BsiHKAI GWGCWC 1 cut(s) 772
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 462, 582, 832
BsmAI GTCTC 2 cut(s) 84, 126
BsnI GGCC 2 cut(s) 615, 642
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 3 cut(s) 298, 411, 427
BspACI CCGC 1 cut(s) 527
BspANI GGCC 2 cut(s) 615, 642
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 5 cut(s) 467, 501, 643, 740, 842
BspPI GGATC 2 cut(s) 419, 422
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 4 cut(s) 334, 548, 597, 844
BssMI GATC 3 cut(s) 298, 411, 427
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 3 cut(s) 334, 548, 844
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 255, 598
Bst4CI ACNGT 3 cut(s) 22, 274, 401
Bst6I CTCTTC 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 57, 306
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 3 cut(s) 301, 414, 430
BstMAI GTCTC 2 cut(s) 84, 126
BstMBI GATC 3 cut(s) 298, 411, 427
BstMWI GCNNNNNNNGC 2 cut(s) 197, 244
BstNI CCWGG 2 cut(s) 255, 598
BstNSI RCATGY 2 cut(s) 238, 684
BstSCI CCNGG 2 cut(s) 253, 596
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 568
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 615, 642
BtsCI GGATG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 641
CsiI ACCWGGT 1 cut(s) 253
Csp6I GTAC 2 cut(s) 251, 802
CviAII CATG 6 cut(s) 117, 131, 235, 524, 681, 808
CviQI GTAC 2 cut(s) 251, 802
DdeI CTNAG 2 cut(s) 57, 306
DpnI GATC 3 cut(s) 300, 413, 429
DpnII GATC 3 cut(s) 298, 411, 427
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 399
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 334, 548, 844
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 253, 596
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 3 cut(s) 334, 548, 844
EcoT22I ATGCAT 1 cut(s) 682
ErhI CCWWGG 3 cut(s) 334, 548, 844
FaeI CATG 6 cut(s) 120, 134, 238, 527, 684, 811
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FatI CATG 6 cut(s) 116, 130, 234, 523, 680, 807
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 2 cut(s) 321, 513
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 2 cut(s) 248, 702
GluI GCNGC 1 cut(s) 557
HaeIII GGCC 2 cut(s) 615, 642
HapII CCGG 1 cut(s) 186
Hin1II CATG 6 cut(s) 120, 134, 238, 527, 684, 811
HinfI GANTC 5 cut(s) 37, 55, 182, 390, 721
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 4 cut(s) 322, 514, 770, 869
Hpy188I TCNGA 5 cut(s) 60, 291, 298, 509, 662
Hpy8I GTNNAC 4 cut(s) 322, 514, 770, 869
HpyAV CCTTC 4 cut(s) 341, 479, 655, 686
HpyCH4III ACNGT 3 cut(s) 22, 274, 401
HpyCH4V TGCA 4 cut(s) 238, 680, 711, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 244
HpyF3I CTNAG 2 cut(s) 57, 306
Hsp92II CATG 6 cut(s) 120, 134, 238, 527, 684, 811
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 298, 411, 427
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 576, 667
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 2 cut(s) 248, 702
MaeIII GTNAC 2 cut(s) 11, 112
MalI GATC 3 cut(s) 300, 413, 429
MboI GATC 3 cut(s) 298, 411, 427
MboII GAAGA 3 cut(s) 416, 789, 845
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 2 cut(s) 477, 730
MlyI GAGTC 2 cut(s) 49, 730
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 3 cut(s) 402, 428, 602
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 255, 598
MvaI CCWGG 2 cut(s) 255, 598
MwoI GCNNNNNNNGC 2 cut(s) 197, 244
NdeII GATC 3 cut(s) 298, 411, 427
NlaIII CATG 6 cut(s) 120, 134, 238, 527, 684, 811
NlaIV GGNNCC 5 cut(s) 467, 501, 643, 740, 842
NmuCI GTSAC 2 cut(s) 11, 112
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 238, 684
NspV TTCGAA 1 cut(s) 203
PfeI GAWTC 3 cut(s) 37, 182, 390
PflFI GACNNNGTC 1 cut(s) 118
PflMI CCANNNNNTGG 2 cut(s) 462, 582
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 2 cut(s) 49, 729
PpsI GAGTC 2 cut(s) 49, 729
Psp6I CCWGG 2 cut(s) 253, 596
PspGI CCWGG 2 cut(s) 253, 596
PspN4I GGNNCC 5 cut(s) 467, 501, 643, 740, 842
PspPI GGNCC 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 252, 803
RsaNI GTAC 2 cut(s) 251, 802
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 3 cut(s) 298, 411, 427
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 2 cut(s) 49, 730
ScrFI CCNGG 2 cut(s) 255, 598
SduI GDGCHC 1 cut(s) 772
SexAI ACCWGGT 1 cut(s) 253
SfaNI GCATC 2 cut(s) 576, 667
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 203
Sse9I AATT 2 cut(s) 477, 730
SsiI CCGC 1 cut(s) 527
SspMI CTAG 2 cut(s) 248, 702
StyD4I CCNGG 2 cut(s) 253, 596
StyI CCWWGG 3 cut(s) 334, 548, 844
TaaI ACNGT 3 cut(s) 22, 274, 401
TaqI TCGA 4 cut(s) 53, 174, 203, 393
TasI AATT 2 cut(s) 477, 730
TfiI GAWTC 3 cut(s) 37, 182, 390
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TseFI GTSAC 2 cut(s) 11, 112
TseI GCWGC 1 cut(s) 556
Tsp45I GTSAC 2 cut(s) 11, 112
TspDTI ATGAA 4 cut(s) 330, 461, 637, 645
Tth111I GACNNNGTC 1 cut(s) 118
Van91I CCANNNNNTGG 2 cut(s) 462, 582
VneI GTGCAC 1 cut(s) 768
XceI RCATGY 2 cut(s) 238, 684
XmiI GTMKAC 2 cut(s) 321, 513
XspI CTAG 2 cut(s) 248, 702
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.