Rw6G003770

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
6160306 .. 6162261
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003770.1

Sequence Viewer

Length: 912 bp
ATGCGGCTGCGTAAGCCAGAAAGTAACCATGACTATTTGTCACAGAACTGTCATCTTTATAGGGATTCTTACTTTGATTCGACTCAAATTACAAGTGGTTCGGTTGTTTCAACAGGAGACTTCAATAAGGATTTCTTTGTGACATGGTCTCCAAGCCATGTAAATACTTCAGCTGATGGCAAGACTAGGAGTTTGAAGCTCGATCAAGAATCCGGTTCTGGTTTTGCTTCGAATCAGATGTTCTTGTTTGGACAGATTGACATGCAAATTAAGCTAGTACCAGGTCGTTCAGCAGGCACAGTGGTAGCCTATTATCTGACATCTGATCAACCTAACCGTGATGAGATAGACTTCGAATTCCTTGGCAATGTGGAAGGCAAACCATATATTGTCCAAACAAACATTTTTGCTGATGGATTCGACAACCGTGAAGAGAGGATCAACCTCTGGTTTGATCCAACAAAAGACTTCCACACCTATTCCATATTATGGAACCTTCATCAAATTGTGTTTATGGTGGATTGGGTTCCCATCAGAGTATACAGAAACCATGCAGACAAGGGTGTGGGATATCCTAGGTGGCAGCCAATGAGCATCAAAACCAGCCTATGGAACGGCGACAGCTGGGCAACCGGAGGTGGCCGTGACAAAATTGACTGGTCAAAGGGGCCCTTCATAGCTTCATTCAGAAACCACAAGATTGATGCATGTATTTGGAAAGGAAATGCTAGGTTTTGCAGGGCAGAGAGCCCTACAAATTGGTGGCACCAGAAAAGATACAGCACCTTAACAAATACACAGAGAAGGTTGTTCAAATGGGTTAGGAAGTACCACATGATTTATGACTATTGCCAAGACAAACAGAGGTTCCAAGGAAATCTTCCAAAGGAGTGTTCTCTTCCCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

303

Amino Acids

35.52

Weight (kDa)

9.05

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 42 - 222 4.9e-61 Glycosyl hydrolases family 16
XET_C PF06955 250 - 298 4.1e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 765
AccB7I CCANNNNNTGG 2 cut(s) 489, 609
AccI GTMKAC 1 cut(s) 540
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 446, 449
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 279, 830
AfiI CCNNNNNNNGG 2 cut(s) 489, 609
AgsI TTSAA 4 cut(s) 111, 124, 196, 814
AhdI GACNNNNNGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 4 cut(s) 864, 877, 896, 909
AluBI AGCT 5 cut(s) 173, 199, 274, 624, 680
AluI AGCT 5 cut(s) 173, 199, 274, 624, 680
Alw26I GTCTC 2 cut(s) 111, 153
AlwI GGATC 2 cut(s) 446, 449
AoxI GGCC 2 cut(s) 640, 668
ApaI GGGCCC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 7, 583
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AspA2I CCTAGG 1 cut(s) 575
AspS9I GGNCC 2 cut(s) 668, 669
AsuII TTCGAA 2 cut(s) 230, 354
AvrII CCTAGG 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 765
BanII GRGCYC 2 cut(s) 672, 752
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 170, 407, 539
BceAI ACGGC 2 cut(s) 627, 631
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 111, 153
BfaI CTAG 4 cut(s) 186, 275, 576, 729
BisI GCNGC 3 cut(s) 5, 8, 584
BlnI CCTAGG 1 cut(s) 575
BlsI GCNGC 3 cut(s) 6, 9, 585
Bme1390I CCNGG 1 cut(s) 282
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 668, 669
BmiI GGNNCC 6 cut(s) 494, 528, 669, 670, 767, 869
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 603, 694
Bpu14I TTCGAA 2 cut(s) 230, 354
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 361, 575, 871
BsaWI WCCGGW 2 cut(s) 212, 632
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 489, 609
Bse1I ACTGG 1 cut(s) 662
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 361, 575, 871
BseLI CCNNNNNNNGG 2 cut(s) 489, 609
BseMI GCAATG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 1 cut(s) 595
BseYI CCCAGC 1 cut(s) 624
BshFI GGCC 2 cut(s) 642, 670
BshNI GGYRCC 1 cut(s) 765
BsiSI CCGG 2 cut(s) 213, 633
BslI CCNNNNNNNGG 2 cut(s) 489, 609
BsmAI GTCTC 2 cut(s) 111, 153
BsnI GGCC 2 cut(s) 642, 670
Bso31I GGTCTC 1 cut(s) 153
Bsp119I TTCGAA 2 cut(s) 230, 354
Bsp120I GGGCCC 1 cut(s) 668
Bsp1286I GDGCHC 2 cut(s) 672, 752
Bsp143I GATC 4 cut(s) 202, 325, 438, 454
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 642, 670
BspLI GGNNCC 6 cut(s) 494, 528, 669, 670, 767, 869
BspPI GGATC 2 cut(s) 446, 449
BspT104I TTCGAA 2 cut(s) 230, 354
BspT107I GGYRCC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 662
BssECI CCNNGG 3 cut(s) 361, 575, 871
BssMI GATC 4 cut(s) 202, 325, 438, 454
BssNAI GTATAC 1 cut(s) 541
BssT1I CCWWGG 3 cut(s) 361, 575, 871
Bst1107I GTATAC 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 4 cut(s) 50, 301, 338, 428
Bst6I CTCTTC 2 cut(s) 426, 903
BstBI TTCGAA 2 cut(s) 230, 354
BstC8I GCNNGC 1 cut(s) 295
BstKTI GATC 4 cut(s) 205, 328, 441, 457
BstMAI GTCTC 2 cut(s) 111, 153
BstMBI GATC 4 cut(s) 202, 325, 438, 454
BstMWI GCNNNNNNNGC 2 cut(s) 13, 271
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 2 cut(s) 265, 711
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 672
BstV1I GCAGC 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 541
BsuRI GGCC 2 cut(s) 642, 670
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 668, 669
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 2 cut(s) 278, 829
CviAII CATG 7 cut(s) 29, 144, 158, 262, 551, 708, 835
CviQI GTAC 2 cut(s) 278, 829
DpnI GATC 4 cut(s) 204, 327, 440, 456
DpnII GATC 4 cut(s) 202, 325, 438, 454
DriI GACNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 2 cut(s) 426, 903
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 426, 903
Eco130I CCWWGG 3 cut(s) 361, 575, 871
Eco24I GRGCYC 2 cut(s) 672, 752
Eco31I GGTCTC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 153
EcoO109I RGGNCCY 2 cut(s) 668, 669
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 3 cut(s) 361, 575, 871
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 2 cut(s) 672, 752
ErhI CCWWGG 3 cut(s) 361, 575, 871
FaeI CATG 7 cut(s) 32, 147, 161, 265, 554, 711, 838
FalI AAGNNNNNCTT 6 cut(s) 119, 151, 656, 688, 864, 896
FatI CATG 7 cut(s) 28, 143, 157, 261, 550, 707, 834
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 3 cut(s) 5, 8, 584
FriOI GRGCYC 2 cut(s) 672, 752
Fsp4HI GCNGC 3 cut(s) 5, 8, 584
FspBI CTAG 4 cut(s) 186, 275, 576, 729
GluI GCNGC 3 cut(s) 5, 8, 584
GsaI CCCAGC 1 cut(s) 628
HaeIII GGCC 2 cut(s) 642, 670
HapII CCGG 2 cut(s) 213, 633
Hin1II CATG 7 cut(s) 32, 147, 161, 265, 554, 711, 838
HinfI GANTC 6 cut(s) 65, 77, 82, 209, 232, 417
HpaII CCGG 2 cut(s) 213, 633
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 5 cut(s) 237, 318, 325, 536, 689
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 4 cut(s) 368, 506, 682, 798
HpyCH4III ACNGT 4 cut(s) 50, 301, 338, 428
HpyCH4V TGCA 4 cut(s) 265, 554, 707, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 271
Hsp92II CATG 7 cut(s) 32, 147, 161, 265, 554, 711, 838
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 202, 325, 438, 454
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 2 cut(s) 603, 694
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 4 cut(s) 186, 275, 576, 729
MaeIII GTNAC 4 cut(s) 23, 39, 139, 644
MalI GATC 4 cut(s) 204, 327, 440, 456
MboI GATC 4 cut(s) 202, 325, 438, 454
MboII GAAGA 3 cut(s) 443, 872, 890
MhlI GDGCHC 2 cut(s) 672, 752
MluCI AATT 6 cut(s) 87, 267, 356, 504, 651, 757
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 482
MnlI CCTC 4 cut(s) 429, 455, 629, 858
Mph1103I ATGCAT 1 cut(s) 709
MseI TTAA 2 cut(s) 270, 788
MspA1I CMGCKG 2 cut(s) 173, 624
MspI CCGG 2 cut(s) 213, 633
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 13, 271
NdeII GATC 4 cut(s) 202, 325, 438, 454
NlaIII CATG 7 cut(s) 32, 147, 161, 265, 554, 711, 838
NlaIV GGNNCC 6 cut(s) 494, 528, 669, 670, 767, 869
NmuCI GTSAC 3 cut(s) 39, 139, 644
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 2 cut(s) 265, 711
NspV TTCGAA 2 cut(s) 230, 354
PfeI GAWTC 5 cut(s) 65, 77, 209, 232, 417
PflFI GACNNNGTC 1 cut(s) 145
PflMI CCANNNNNTGG 2 cut(s) 489, 609
PkrI GCNGC 3 cut(s) 6, 9, 585
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 6 cut(s) 494, 528, 669, 670, 767, 869
PspOMI GGGCCC 1 cut(s) 668
PspPI GGNCC 2 cut(s) 668, 669
PsyI GACNNNGTC 1 cut(s) 145
PvuII CAGCTG 2 cut(s) 173, 624
RsaI GTAC 2 cut(s) 279, 830
RsaNI GTAC 2 cut(s) 278, 829
SaqAI TTAA 2 cut(s) 270, 788
SatI GCNGC 3 cut(s) 5, 8, 584
Sau3AI GATC 4 cut(s) 202, 325, 438, 454
Sau96I GGNCC 2 cut(s) 668, 669
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 672, 752
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 2 cut(s) 603, 694
SfuI TTCGAA 2 cut(s) 230, 354
Sse9I AATT 6 cut(s) 87, 267, 356, 504, 651, 757
SsiI CCGC 1 cut(s) 4
SspMI CTAG 4 cut(s) 186, 275, 576, 729
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 3 cut(s) 361, 575, 871
TaaI ACNGT 4 cut(s) 50, 301, 338, 428
TaqI TCGA 5 cut(s) 80, 201, 230, 354, 420
TasI AATT 6 cut(s) 87, 267, 356, 504, 651, 757
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 5 cut(s) 65, 77, 209, 232, 417
Tru1I TTAA 2 cut(s) 270, 788
Tru9I TTAA 2 cut(s) 270, 788
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 3 cut(s) 39, 139, 644
TseI GCWGC 2 cut(s) 7, 583
Tsp45I GTSAC 3 cut(s) 39, 139, 644
TspDTI ATGAA 3 cut(s) 488, 664, 672
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 145
Van91I CCANNNNNTGG 2 cut(s) 489, 609
XapI RAATTY 1 cut(s) 356
XceI RCATGY 2 cut(s) 265, 711
XmaJI CCTAGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 4 cut(s) 186, 275, 576, 729
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.