Prupe.8G152500_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
16541861 .. 16543560
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G152500.1

Sequence Viewer

Length: 888 bp
ATGAGTGATAATCACAGAATTGTCATCTTTATTGGGTTTTTTCTTACTTTGACATCGATTCGAATTACAGATTGTTCCGTTGTTTCAACAGGCGACTTCAACAAGGATTTCTTTGTGACATGGTCTCCTAGCCATGTAAACACTTCAGCTGATGGCAGGACAAGGAGTATGAAGCTCGACCAAGAATCCGGTGCTGGTTTTGCTTCAAATCAGATGTTTTTGTTTGGACAAATTGACATGCAAATTAAACTAGTACCAGGTGATTCAGCAGGCACAGTTGTGGCCTATTATCTGACATCTGATCAACCTAACCGTGACGAAGTAGACTTCGAGTTCCTTGGAAATGTGGCAGGCAAACCATATATCATTCAAACAAACATGTTTGCTGATGGATTGGGCAACCGTGAAGAAAGGGTCAATCTGTGGTTTGATCCAACAAAGGACTTCCATACCTATTCAATACTATGGAACCTTCACCAAATTGTGTTCATGGTGGATTGGGTTCCAATCAGAGTATACAGAAACCATGCAGACAAGGGTGTAGCATTTCCAAGGTGGCAGCCAATGAGCATAAAAACCAGCCTATGGAATGGCGACAGCTGGGCGACAAGAGGTGGCAAGGACAAAACTGATTGGTCAAAGGGCCCATTCATAGCTTCATTCAGAAACTACAAGATTGATGCCTGTGTCTGGAAAGGAAATGCAAGGTTTTGCAGGGCAGAGAGCCCTACAAACTGGTGGAACAAGAAGAAGTTCAGCACCCTAACAAAAACACAGAGAAGGTTGTTCAAATGGGTTAGAAAGCACCACATGATTTATGACTATTGCCAAGATAAACAGAGGTTCCAAGGCAACCTTCCAAAGGAGTGCTCTCTGCCTAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

296

Amino Acids

34.3

Weight (kDa)

9.35

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AccI GTMKAC 2 cut(s) 324, 516
AclWI GGATC 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 585, 690, 862
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 6 cut(s) 87, 100, 207, 371, 459, 790
AhlI ACTAGT 1 cut(s) 250
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 840, 872
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 4 cut(s) 149, 175, 600, 656
AluI AGCT 4 cut(s) 149, 175, 600, 656
Alw21I GWGCWC 1 cut(s) 872
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 425
AoxI GGCC 2 cut(s) 282, 643
ApaI GGGCCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 2 cut(s) 643, 644
AsuHPI GGTGA 2 cut(s) 272, 467
AsuII TTCGAA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 647
BanII GRGCYC 2 cut(s) 647, 728
Bbv12I GWGCWC 1 cut(s) 872
BbvI GCAGC 1 cut(s) 571
BccI CCATC 2 cut(s) 146, 383
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 2 cut(s) 129, 251
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 643, 644
BmiI GGNNCC 4 cut(s) 470, 504, 645, 845
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 670
Bpu14I TTCGAA 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 337, 551, 847
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 3 cut(s) 585, 690, 862
Bse1I ACTGG 1 cut(s) 740
BseBI CCWGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 337, 551, 847
BseLI CCNNNNNNNGG 3 cut(s) 585, 690, 862
BseNI ACTGG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 1 cut(s) 571
BseYI CCCAGC 1 cut(s) 600
BshFI GGCC 2 cut(s) 284, 645
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 872
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 585, 690, 862
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 284, 645
Bso31I GGTCTC 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 61
Bsp120I GGGCCC 1 cut(s) 643
Bsp1286I GDGCHC 3 cut(s) 647, 728, 872
Bsp143I GATC 2 cut(s) 301, 430
BspANI GGCC 2 cut(s) 284, 645
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 4 cut(s) 470, 504, 645, 845
BspPI GGATC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 337, 551, 847
BssMI GATC 2 cut(s) 301, 430
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 3 cut(s) 337, 551, 847
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 277, 314, 404
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 271, 352
BstDEI CTNAG 1 cut(s) 879
BstENI CCTNNNNNAGG 1 cut(s) 860
BstKTI GATC 2 cut(s) 304, 433
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 301, 430
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 2 cut(s) 241, 382
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 647
BstV1I GCAGC 1 cut(s) 571
BstZ17I GTATAC 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 2 cut(s) 284, 645
BsuTUI ATCGAT 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 271, 352
Cfr13I GGNCC 2 cut(s) 643, 644
ClaI ATCGAT 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 256
Csp6I GTAC 1 cut(s) 254
CviAII CATG 7 cut(s) 120, 134, 238, 379, 490, 527, 811
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 879
DpnI GATC 2 cut(s) 303, 432
DpnII GATC 2 cut(s) 301, 430
Eco130I CCWWGG 3 cut(s) 337, 551, 847
Eco24I GRGCYC 2 cut(s) 647, 728
Eco31I GGTCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 860
EcoO109I RGGNCCY 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 337, 551, 847
EcoT38I GRGCYC 2 cut(s) 647, 728
ErhI CCWWGG 3 cut(s) 337, 551, 847
FaeI CATG 7 cut(s) 123, 137, 241, 382, 493, 530, 814
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 840, 872
FatI CATG 7 cut(s) 119, 133, 237, 378, 489, 526, 810
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 324, 516
Fnu4HI GCNGC 1 cut(s) 560
FriOI GRGCYC 2 cut(s) 647, 728
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 2 cut(s) 129, 251
GluI GCNGC 1 cut(s) 560
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 2 cut(s) 284, 645
HapII CCGG 1 cut(s) 189
Hin1II CATG 7 cut(s) 123, 137, 241, 382, 493, 530, 814
HinfI GANTC 3 cut(s) 58, 185, 263
HpaII CCGG 1 cut(s) 189
HphI GGTGA 2 cut(s) 272, 467
Hpy166II GTNNAC 3 cut(s) 139, 325, 517
Hpy188I TCNGA 5 cut(s) 213, 294, 301, 512, 665
Hpy188III TCNNGA 1 cut(s) 691
Hpy8I GTNNAC 3 cut(s) 139, 325, 517
HpyAV CCTTC 3 cut(s) 482, 774, 866
HpyCH4III ACNGT 3 cut(s) 277, 314, 404
HpyCH4V TGCA 4 cut(s) 241, 530, 704, 714
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 879
Hsp92II CATG 7 cut(s) 123, 137, 241, 382, 493, 530, 814
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 301, 430
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 1 cut(s) 670
MabI ACCWGGT 1 cut(s) 256
MaeI CTAG 2 cut(s) 129, 251
MaeIII GTNAC 2 cut(s) 115, 314
MalI GATC 2 cut(s) 303, 432
MboI GATC 2 cut(s) 301, 430
MboII GAAGA 2 cut(s) 419, 760
MhlI GDGCHC 3 cut(s) 647, 728, 872
MluCI AATT 5 cut(s) 18, 63, 231, 243, 480
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 2 cut(s) 605, 834
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 149, 600
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 2 cut(s) 301, 430
NlaIII CATG 7 cut(s) 123, 137, 241, 382, 493, 530, 814
NlaIV GGNNCC 4 cut(s) 470, 504, 645, 845
NmuCI GTSAC 2 cut(s) 115, 314
NspI RCATGY 2 cut(s) 241, 382
NspV TTCGAA 1 cut(s) 61
OliI CACNNNNGTG 1 cut(s) 278
PciI ACATGT 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 3 cut(s) 58, 185, 263
PflFI GACNNNGTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 1 cut(s) 561
PscI ACATGT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 4 cut(s) 470, 504, 645, 845
PspOMI GGGCCC 1 cut(s) 643
PspPI GGNCC 2 cut(s) 643, 644
PsyI GACNNNGTC 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 149, 600
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 2 cut(s) 301, 430
Sau96I GGNCC 2 cut(s) 643, 644
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 3 cut(s) 647, 728, 872
SexAI ACCWGGT 1 cut(s) 256
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 250
Sse9I AATT 5 cut(s) 18, 63, 231, 243, 480
SspMI CTAG 2 cut(s) 129, 251
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 3 cut(s) 337, 551, 847
TaaI ACNGT 3 cut(s) 277, 314, 404
TaqI TCGA 4 cut(s) 56, 61, 177, 330
TasI AATT 5 cut(s) 18, 63, 231, 243, 480
TfiI GAWTC 3 cut(s) 58, 185, 263
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 2 cut(s) 115, 314
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 2 cut(s) 115, 314
TspDTI ATGAA 4 cut(s) 185, 478, 640, 648
TspGWI ACGGA 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 585
XagI CCTNNNNNAGG 1 cut(s) 860
XceI RCATGY 2 cut(s) 241, 382
XmiI GTMKAC 2 cut(s) 324, 516
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 2 cut(s) 129, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.