Rmu_sc0004057.1_g000004

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004057.1
Physical Location & Seq
Forward (+)
18925 .. 20245
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004057.1_g000004.1.cds

Sequence Viewer

Length: 885 bp
atgactatttgtcacagaactgtcatctttatagggattcttactttgatatcgactcaaattacaagtggttcggttgtttcaacaggagacttcaataaggatttctttgtgacatggtctccaagccatgtaaatacttcagctgatggcaagactaggagtttgaagctcgaccaagaatccggttctggttttgcttcgaatcagatgttcttgtttggacagattgacatgcaaattaagctagtaccaggtcgttcagcaggcacagtggtagcctattatctgacatctgatcaacctaaccgtgatgagatagacttcgaattccttggcaatgtggaaggcaaaccatatattgtccaaacaaacatttttgctgatggattcgacaaccgtgaagagaggatcaacctctggtttgatccaacaaaagacttccacacctattccatattatggaaccttcatcaaattgtgtttatggtggattgggttcccatcagagtatacagaaaccatgcagacaagggtgtgggatatcctaggtggcagccaatgagcatcaaaaccagcctatggaacggcgacagctgggcaaccggaggtggccgtgacaaaattgactggtcaaaggggcccttcatagcttcattcagaaaccacaagattgatgcatgtatttggaaaggaaatgctaggttttgcagggcagagagccctacaaattggtggcaccagaaaagatacagcaccttaacaaatacacagagaaggttgttcaaatgggttaggaagtaccacatgatttatgactattgccaagacaaacagaggttccaaggaaatcttccgaaggagtgttctcttcccaagtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

294

Amino Acids

34.17

Weight (kDa)

9.2

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 738
AccB7I CCANNNNNTGG 2 cut(s) 462, 582
AccI GTMKAC 1 cut(s) 513
AclWI GGATC 2 cut(s) 419, 422
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 252, 803
AfiI CCNNNNNNNGG 2 cut(s) 462, 582
AgsI TTSAA 4 cut(s) 84, 97, 169, 787
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 837, 869
AluBI AGCT 5 cut(s) 146, 172, 247, 597, 653
AluI AGCT 5 cut(s) 146, 172, 247, 597, 653
Alw26I GTCTC 2 cut(s) 84, 126
AlwI GGATC 2 cut(s) 419, 422
AoxI GGCC 2 cut(s) 613, 641
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 556
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AspA2I CCTAGG 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 641, 642
AsuII TTCGAA 2 cut(s) 203, 327
AvrII CCTAGG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 738
BanII GRGCYC 2 cut(s) 645, 725
BbvI GCAGC 1 cut(s) 568
BccI CCATC 3 cut(s) 143, 380, 512
BceAI ACGGC 2 cut(s) 600, 604
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 84, 126
BfaI CTAG 4 cut(s) 159, 248, 549, 702
BisI GCNGC 1 cut(s) 557
BlnI CCTAGG 1 cut(s) 548
BlsI GCNGC 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 255
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 641, 642
BmiI GGNNCC 6 cut(s) 467, 501, 642, 643, 740, 842
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 2 cut(s) 576, 667
Bpu14I TTCGAA 2 cut(s) 203, 327
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 334, 548, 844
BsaWI WCCGGW 2 cut(s) 185, 605
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 582
Bse1I ACTGG 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 334, 548, 844
BseLI CCNNNNNNNGG 2 cut(s) 462, 582
BseMI GCAATG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 1 cut(s) 568
BseYI CCCAGC 1 cut(s) 597
BshFI GGCC 2 cut(s) 615, 643
BshNI GGYRCC 1 cut(s) 738
BsiSI CCGG 2 cut(s) 186, 606
BslI CCNNNNNNNGG 2 cut(s) 462, 582
BsmAI GTCTC 2 cut(s) 84, 126
BsnI GGCC 2 cut(s) 615, 643
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 2 cut(s) 203, 327
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 645, 725
Bsp143I GATC 3 cut(s) 298, 411, 427
BspANI GGCC 2 cut(s) 615, 643
BspLI GGNNCC 6 cut(s) 467, 501, 642, 643, 740, 842
BspPI GGATC 2 cut(s) 419, 422
BspT104I TTCGAA 2 cut(s) 203, 327
BspT107I GGYRCC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 3 cut(s) 334, 548, 844
BssMI GATC 3 cut(s) 298, 411, 427
BssNAI GTATAC 1 cut(s) 514
BssT1I CCWWGG 3 cut(s) 334, 548, 844
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 4 cut(s) 22, 274, 311, 401
Bst6I CTCTTC 2 cut(s) 399, 876
BstBI TTCGAA 2 cut(s) 203, 327
BstC8I GCNNGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 301, 414, 430
BstMAI GTCTC 2 cut(s) 84, 126
BstMBI GATC 3 cut(s) 298, 411, 427
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 238, 684
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 568
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 615, 643
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 641, 642
CsiI ACCWGGT 1 cut(s) 253
Csp6I GTAC 2 cut(s) 251, 802
CviAII CATG 6 cut(s) 117, 131, 235, 524, 681, 808
CviQI GTAC 2 cut(s) 251, 802
DpnI GATC 3 cut(s) 300, 413, 429
DpnII GATC 3 cut(s) 298, 411, 427
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 399, 876
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 2 cut(s) 399, 876
Eco130I CCWWGG 3 cut(s) 334, 548, 844
Eco24I GRGCYC 2 cut(s) 645, 725
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 51, 545
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 641, 642
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 253
EcoRV GATATC 2 cut(s) 51, 545
EcoT14I CCWWGG 3 cut(s) 334, 548, 844
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 645, 725
ErhI CCWWGG 3 cut(s) 334, 548, 844
FaeI CATG 6 cut(s) 120, 134, 238, 527, 684, 811
FalI AAGNNNNNCTT 6 cut(s) 92, 124, 629, 661, 837, 869
FatI CATG 6 cut(s) 116, 130, 234, 523, 680, 807
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 557
FriOI GRGCYC 2 cut(s) 645, 725
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 4 cut(s) 159, 248, 549, 702
GluI GCNGC 1 cut(s) 557
GsaI CCCAGC 1 cut(s) 601
HaeIII GGCC 2 cut(s) 615, 643
HapII CCGG 2 cut(s) 186, 606
Hin1II CATG 6 cut(s) 120, 134, 238, 527, 684, 811
HinfI GANTC 5 cut(s) 37, 55, 182, 205, 390
HpaII CCGG 2 cut(s) 186, 606
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 6 cut(s) 210, 291, 298, 509, 662, 858
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 5 cut(s) 341, 479, 655, 771, 853
HpyCH4III ACNGT 4 cut(s) 22, 274, 311, 401
HpyCH4V TGCA 4 cut(s) 238, 527, 680, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92II CATG 6 cut(s) 120, 134, 238, 527, 684, 811
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 298, 411, 427
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 576, 667
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 4 cut(s) 159, 248, 549, 702
MaeIII GTNAC 3 cut(s) 11, 112, 617
MalI GATC 3 cut(s) 300, 413, 429
MboI GATC 3 cut(s) 298, 411, 427
MboII GAAGA 3 cut(s) 416, 845, 863
MhlI GDGCHC 2 cut(s) 645, 725
MluCI AATT 6 cut(s) 60, 240, 329, 477, 624, 730
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 402, 428, 602, 831
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 2 cut(s) 243, 761
MspA1I CMGCKG 2 cut(s) 146, 597
MspI CCGG 2 cut(s) 186, 606
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 3 cut(s) 298, 411, 427
NlaIII CATG 6 cut(s) 120, 134, 238, 527, 684, 811
NlaIV GGNNCC 6 cut(s) 467, 501, 642, 643, 740, 842
NmuCI GTSAC 3 cut(s) 11, 112, 617
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 238, 684
NspV TTCGAA 2 cut(s) 203, 327
PfeI GAWTC 4 cut(s) 37, 182, 205, 390
PflFI GACNNNGTC 1 cut(s) 118
PflMI CCANNNNNTGG 2 cut(s) 462, 582
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 6 cut(s) 467, 501, 642, 643, 740, 842
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 2 cut(s) 641, 642
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 146, 597
RsaI GTAC 2 cut(s) 252, 803
RsaNI GTAC 2 cut(s) 251, 802
SaqAI TTAA 2 cut(s) 243, 761
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 3 cut(s) 298, 411, 427
Sau96I GGNCC 2 cut(s) 641, 642
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 645, 725
SexAI ACCWGGT 1 cut(s) 253
SfaNI GCATC 2 cut(s) 576, 667
SfuI TTCGAA 2 cut(s) 203, 327
Sse9I AATT 6 cut(s) 60, 240, 329, 477, 624, 730
SspMI CTAG 4 cut(s) 159, 248, 549, 702
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 3 cut(s) 334, 548, 844
TaaI ACNGT 4 cut(s) 22, 274, 311, 401
TaqI TCGA 5 cut(s) 53, 174, 203, 327, 393
TasI AATT 6 cut(s) 60, 240, 329, 477, 624, 730
TfiI GAWTC 4 cut(s) 37, 182, 205, 390
Tru1I TTAA 2 cut(s) 243, 761
Tru9I TTAA 2 cut(s) 243, 761
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 3 cut(s) 11, 112, 617
TseI GCWGC 1 cut(s) 556
Tsp45I GTSAC 3 cut(s) 11, 112, 617
TspDTI ATGAA 3 cut(s) 461, 637, 645
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 118
Van91I CCANNNNNTGG 2 cut(s) 462, 582
XapI RAATTY 1 cut(s) 329
XceI RCATGY 2 cut(s) 238, 684
XmaJI CCTAGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 4 cut(s) 159, 248, 549, 702
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.