RchiOBHm_Chr6g0247771

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
3780590 .. 3782067
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22210

Sequence Viewer

Length: 873 bp
ATGACTATTTGTCACAGAACTGTCATCTTTATAGGGATTCTTACTTTGATATCGACTCAAATTACAAGTGGTTCGGTTGTTTCAACAGGAGACTTCAATAAGGATTTCTTTGTGACATGGTCTCCAAGCCATGTAAATACTTCAGCTGATGGCAAGACTAGGAGTTTGAAGCTCGACCAAGAATCCGGTTCTGGTTTTGCTTCGAATCAGATGTTCTTGTTTGGACAGATTGACATGCAAATTAAGCTAGTACCAGGTCGTTCAGCGGGCACAGTGCTGACATCCGATCAACCTAACCGTGATGAGATAGACTTCGAATTCCTTGGCAATGTGGAAGGCAAACCATATATTGTCCAAACAAACATTTTTGCTGATGGATTGGACAACCGTGAAGAGAGGATCAACCTCTGGTTTGATCCAACAAAAGACTTCCACACCTATTCCATATTATGGAACCTTCATCAAATTGTGTTTATGGTGGATTGGGTTCCCATCAGAGTATACAGAAACCATGCAGACAATGGTGTGGGATATCCTAGGTGGCAGCCAATGAGCATCAAAACCAGCCTATGGAACGGCGACAGCTGGGCAACCGGGGGTGGCCGTGACAAAATTGACTGGTCAAAGGGGCCCTTCATATCTTCATTCAGATACCACAAGATTGATGCATGTATTTGGAAAGGAAATGCTAGGTTTTGCAGGGCAGAGAGCCCTACAAATTGGTGGCACCAGAAAAGATACAGCACCTTAACAAATACACAGAGAAGGTTGTTCAAATGGGTTAGGAAGTACCACATGATTTATGACTATTGCCAAGACAAACAGAGGTTCCAAGGAAATCTTCCAAAGGAGTGTTCTCTTCCCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

290

Amino Acids

33.69

Weight (kDa)

9.12

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 33 - 209 1e-55 Glycosyl hydrolases family 16
XET_C PF06955 237 - 285 3.8e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14620
fragaria_vesca FvH4_2g02970
malus_domestica MD10G1112700.v1.1
prunus_persica Prupe.8G152500_v2.0.a1
pyrus_communis pycom10g09750
rosa_chinensis RchiOBHm_Chr6g0247771
rosa_laevigata RLG00000015181
rosa_multiflora Rmu_sc0004057.1_g000004 Rmu_sc0009569.1_g000006
rosa_roxburghii Rroxscaffold_180G00433260 Rroxscaffold_7G00213680
rosa_rugosa Rorug05G0528400
rosa_samantha Rh6BG038100 Rh6DG033900
rosa_wichuraiana Rw6G003770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 2 cut(s) 450, 570
AccI GTMKAC 1 cut(s) 501
AciI CCGC 1 cut(s) 266
AclWI GGATC 2 cut(s) 407, 410
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 252, 791
AfiI CCNNNNNNNGG 2 cut(s) 450, 570
AgsI TTSAA 4 cut(s) 84, 97, 169, 775
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 4 cut(s) 825, 838, 857, 870
AluBI AGCT 4 cut(s) 146, 172, 247, 585
AluI AGCT 4 cut(s) 146, 172, 247, 585
Alw26I GTCTC 2 cut(s) 84, 126
AlwI GGATC 2 cut(s) 407, 410
AoxI GGCC 2 cut(s) 601, 629
ApaI GGGCCC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 1 cut(s) 317
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AspA2I CCTAGG 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 629, 630
AsuC2I CCSGG 1 cut(s) 595
AsuII TTCGAA 2 cut(s) 203, 315
AvrII CCTAGG 1 cut(s) 536
BaeGI GKGCMC 2 cut(s) 272, 633
BanI GGYRCC 1 cut(s) 726
BanII GRGCYC 2 cut(s) 633, 713
BbvI GCAGC 1 cut(s) 556
BccI CCATC 3 cut(s) 143, 368, 500
BceAI ACGGC 2 cut(s) 588, 592
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 84, 126
BfaI CTAG 4 cut(s) 159, 248, 537, 690
BisI GCNGC 1 cut(s) 545
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 1 cut(s) 546
Bme1390I CCNGG 2 cut(s) 255, 595
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 629, 630
BmiI GGNNCC 6 cut(s) 455, 489, 630, 631, 728, 830
BmrFI CCNGG 2 cut(s) 255, 595
BmsI GCATC 2 cut(s) 564, 655
Bpu14I TTCGAA 2 cut(s) 203, 315
BpuMI CCSGG 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 322, 536, 594, 832
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 570
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 4 cut(s) 322, 536, 594, 832
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 450, 570
BseMI GCAATG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 623
BseSI GKGCMC 2 cut(s) 272, 633
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 585
BshFI GGCC 2 cut(s) 603, 631
BshNI GGYRCC 1 cut(s) 726
BsiSI CCGG 2 cut(s) 186, 594
BslI CCNNNNNNNGG 2 cut(s) 450, 570
BsmAI GTCTC 2 cut(s) 84, 126
BsnI GGCC 2 cut(s) 603, 631
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 2 cut(s) 203, 315
Bsp120I GGGCCC 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 272, 633, 713
Bsp143I GATC 3 cut(s) 286, 399, 415
BspACI CCGC 1 cut(s) 266
BspANI GGCC 2 cut(s) 603, 631
BspLI GGNNCC 6 cut(s) 455, 489, 630, 631, 728, 830
BspPI GGATC 2 cut(s) 407, 410
BspT104I TTCGAA 2 cut(s) 203, 315
BspT107I GGYRCC 1 cut(s) 726
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 4 cut(s) 322, 536, 594, 832
BssMI GATC 3 cut(s) 286, 399, 415
BssNAI GTATAC 1 cut(s) 502
BssT1I CCWWGG 3 cut(s) 322, 536, 832
Bst1107I GTATAC 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 4 cut(s) 22, 274, 299, 389
Bst6I CTCTTC 2 cut(s) 387, 864
BstBI TTCGAA 2 cut(s) 203, 315
BstC8I GCNNGC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 3 cut(s) 289, 402, 418
BstMAI GTCTC 2 cut(s) 84, 126
BstMBI GATC 3 cut(s) 286, 399, 415
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 238, 672
BstSCI CCNGG 2 cut(s) 253, 593
BstSLI GKGCMC 2 cut(s) 272, 633
BstV1I GCAGC 1 cut(s) 556
BstZ17I GTATAC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 603, 631
BtsCI GGATG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 629, 630
CsiI ACCWGGT 1 cut(s) 253
Csp6I GTAC 2 cut(s) 251, 790
CviAII CATG 6 cut(s) 117, 131, 235, 512, 669, 796
CviQI GTAC 2 cut(s) 251, 790
DpnI GATC 3 cut(s) 288, 401, 417
DpnII GATC 3 cut(s) 286, 399, 415
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 2 cut(s) 387, 864
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 2 cut(s) 387, 864
Eco130I CCWWGG 3 cut(s) 322, 536, 832
Eco24I GRGCYC 2 cut(s) 633, 713
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 51, 533
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 629, 630
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 253
EcoRV GATATC 2 cut(s) 51, 533
EcoT14I CCWWGG 3 cut(s) 322, 536, 832
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 633, 713
ErhI CCWWGG 3 cut(s) 322, 536, 832
FaeI CATG 6 cut(s) 120, 134, 238, 515, 672, 799
FalI AAGNNNNNCTT 6 cut(s) 92, 124, 617, 649, 825, 857
FatI CATG 6 cut(s) 116, 130, 234, 511, 668, 795
FauI CCCGC 1 cut(s) 259
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 545
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 2 cut(s) 633, 713
Fsp4HI GCNGC 1 cut(s) 545
FspBI CTAG 4 cut(s) 159, 248, 537, 690
GluI GCNGC 1 cut(s) 545
GsaI CCCAGC 1 cut(s) 589
HaeIII GGCC 2 cut(s) 603, 631
HapII CCGG 2 cut(s) 186, 594
Hin1II CATG 6 cut(s) 120, 134, 238, 515, 672, 799
HinfI GANTC 4 cut(s) 37, 55, 182, 205
HpaII CCGG 2 cut(s) 186, 594
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 4 cut(s) 210, 286, 497, 650
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 4 cut(s) 329, 467, 643, 759
HpyCH4III ACNGT 4 cut(s) 22, 274, 299, 389
HpyCH4V TGCA 4 cut(s) 238, 515, 668, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92II CATG 6 cut(s) 120, 134, 238, 515, 672, 799
Kzo9I GATC 3 cut(s) 286, 399, 415
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 2 cut(s) 564, 655
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 4 cut(s) 159, 248, 537, 690
MaeIII GTNAC 3 cut(s) 11, 112, 605
MalI GATC 3 cut(s) 288, 401, 417
MboI GATC 3 cut(s) 286, 399, 415
MboII GAAGA 4 cut(s) 404, 633, 833, 851
MhlI GDGCHC 3 cut(s) 272, 633, 713
MluCI AATT 6 cut(s) 60, 240, 317, 465, 612, 718
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 3 cut(s) 390, 416, 819
Mph1103I ATGCAT 1 cut(s) 670
MseI TTAA 2 cut(s) 243, 749
MspA1I CMGCKG 3 cut(s) 146, 266, 585
MspI CCGG 2 cut(s) 186, 594
MspR9I CCNGG 2 cut(s) 255, 595
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 595
NdeII GATC 3 cut(s) 286, 399, 415
NlaIII CATG 6 cut(s) 120, 134, 238, 515, 672, 799
NlaIV GGNNCC 6 cut(s) 455, 489, 630, 631, 728, 830
NmuCI GTSAC 3 cut(s) 11, 112, 605
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 2 cut(s) 238, 672
NspV TTCGAA 2 cut(s) 203, 315
PfeI GAWTC 3 cut(s) 37, 182, 205
PflFI GACNNNGTC 1 cut(s) 118
PflMI CCANNNNNTGG 2 cut(s) 450, 570
PkrI GCNGC 1 cut(s) 546
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 6 cut(s) 455, 489, 630, 631, 728, 830
PspOMI GGGCCC 1 cut(s) 629
PspPI GGNCC 2 cut(s) 629, 630
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 146, 585
RsaI GTAC 2 cut(s) 252, 791
RsaNI GTAC 2 cut(s) 251, 790
SaqAI TTAA 2 cut(s) 243, 749
SatI GCNGC 1 cut(s) 545
Sau3AI GATC 3 cut(s) 286, 399, 415
Sau96I GGNCC 2 cut(s) 629, 630
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 255, 595
SduI GDGCHC 3 cut(s) 272, 633, 713
SexAI ACCWGGT 1 cut(s) 253
SfaNI GCATC 2 cut(s) 564, 655
SfuI TTCGAA 2 cut(s) 203, 315
Sse9I AATT 6 cut(s) 60, 240, 317, 465, 612, 718
SsiI CCGC 1 cut(s) 266
SspMI CTAG 4 cut(s) 159, 248, 537, 690
StyD4I CCNGG 2 cut(s) 253, 593
StyI CCWWGG 3 cut(s) 322, 536, 832
TaaI ACNGT 4 cut(s) 22, 274, 299, 389
TaqI TCGA 4 cut(s) 53, 174, 203, 315
TasI AATT 6 cut(s) 60, 240, 317, 465, 612, 718
TfiI GAWTC 3 cut(s) 37, 182, 205
Tru1I TTAA 2 cut(s) 243, 749
Tru9I TTAA 2 cut(s) 243, 749
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 3 cut(s) 11, 112, 605
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 3 cut(s) 11, 112, 605
TspDTI ATGAA 3 cut(s) 449, 625, 633
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 118
Van91I CCANNNNNTGG 2 cut(s) 450, 570
XapI RAATTY 1 cut(s) 317
XceI RCATGY 2 cut(s) 238, 672
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XmaJI CCTAGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 4 cut(s) 159, 248, 537, 690
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.