FvH4_2g03040

Aspartyl-tRNA synthetase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
2344078 .. 2349525
5448 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03040.t7

Sequence Viewer

Length: 1515 bp
ATGAAAACCGGCGAAATTGAGATTGCGGCGGAGAATGTTCAAGTGTTGAATGCAGTGAGGGCAAAGCTGCCGTTTTTAGTTACTACTGCGGAGGATGCAAAGGATTTGATGAAGGAGGAGATACGGTTGAGGTACCGGTGTCTTGACTTGCGCCGGCCGCAAATGCAATCCAACATAATGCTGCGGCATAAGGTGGTGAAACTGATGAGAAGGTATCTGGAGGATGTACATGATTTTGTGGAGATTGAGACTCCAATACTCTCTAGATCGACACCCGAAGGAGCCCGAGATTATTTAGTTCCATCGAGAGTTCAGCCAGGAACATTTTATGCTTTGCCTCAAAGTCCGCAACTGTTCAAGCAAATGTTGATGGTTTCTGGTTTTGATAAGTATTATCAGATAGCAAGATGTTTTCGGGATGAAGATTTAAGAGCTGATAGGCAGCCCGAGTTTACACAGCTTGATATGGAGCTTGCTTTTACTCCCTTAGAGGACATGCTGAAGCTTAACGAAGATTTGATTAGAAAGGTTTTTTTAGAGATCAAAGGTGTAGATCTCCCAAACCCTTTTCCTAGGCTTACATATGCTGAAGCAATTAGTCGTTATGGTTCGGACAGGCCAGATATTAGATTTGATCTTGAGTTGAAAGATGTATCTGATATTTTCTCAGATTCCACATTCAGGGTTTTTGCTGATACTTTGGGAAGTGGAGGAATCATAAAAGTTTTATGTGTACCTTCTGGTGCTAAAAGATATTCAAACACAGCTCTAAAGAAGGGAGATATTTATAATCAAGCAATCAAGTCTGGAGCGAAGGGCTTGCCTTTCCTGAAGGTCTTAGATGATGGTGGAATTGAGGGAATTCCTGCATTAACATCTAGTTTGGATCAAACAAAGATAGAGCAATTTCTGAGTCGTTGCTCTGCCAAGCCAGGGGATCTGATCTTGTTTGCAGTTGGTCATCAGACATCAGTTAATAAAACCCTAGATCGATTACGGGTCTTTGTTGCACACGAGCTTGATTTGATTGATGATTCCAGGCATTCAATTCTGTGGGTGACTGATTTCCCAATGTTTGAATGGAATGACTTAGAGCAAAGGTTTGAGGCCTTGCACCACCCCTTCACTGCCCCAAATCCTGAAGACATAAATGATCTTTCTTCTGCTCGTGCTATAGCATATGACATGGTTTACAATGGAGTTGAGATTGGTGGCGGAAGTCTGAGAATTTATAAACGTGAGGTGCAGCAAAAGGTTTTGGAAATCGTTGGCATCTCCCCTGAAGAGGCTGAAGCGAAGTTTGGCTATCTTCTTGAGGCACTAGACATGGGTGCCCCTCCACATGGGGGAATTGCCTATGGTTTGGATAGATTGGTCATGTTGCTGGCTGGTGCTAGTTCCATTAGGGATGTCATAGCTTTCCCAAAAACTACAACTGCACAATGTGCTCTTACCAGATCGCCGTCTGAGGTGGATCCCCAGCAGCTACAGGATTTGTCATTGCAGACTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

56.83

Weight (kDa)

5.35

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2 PF00152 38 - 357 1.8e-79 tRNA synthetases class II (D, K and N)
GAD PF02938 230 - 329 8.3e-19 GAD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 789, 1233
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 132, 1331
AciI CCGC 7 cut(s) 26, 29, 89, 158, 184, 347, 1215
AclWI GGATC 4 cut(s) 894, 945, 1469, 1482
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 861, 1227
AcuI CTGAAG 6 cut(s) 521, 609, 851, 1161, 1302, 1311
AdeI CACNNNGTG 1 cut(s) 1445
AfaI GTAC 3 cut(s) 134, 228, 735
AfiI CCNNNNNNNGG 5 cut(s) 681, 933, 1285, 1343, 1346
AgeI ACCGGT 1 cut(s) 135
AgsI TTSAA 7 cut(s) 41, 49, 358, 646, 759, 1047, 1079
AjnI CCWGG 3 cut(s) 316, 931, 1037
AjuI GAANNNNNNNTTGG 2 cut(s) 1284, 1316
AluBI AGCT 9 cut(s) 67, 434, 460, 472, 505, 767, 1018, 1418, 1486
AluI AGCT 9 cut(s) 67, 434, 460, 472, 505, 767, 1018, 1418, 1486
Alw21I GWGCWC 1 cut(s) 1450
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 4 cut(s) 894, 945, 1469, 1482
Ama87I CYCGRG 2 cut(s) 285, 446
AoxI GGCC 3 cut(s) 155, 617, 1107
ApeKI GCWGC 5 cut(s) 67, 181, 442, 1246, 1483
ApoI RAATTY 2 cut(s) 861, 1227
AsiGI ACCGGT 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 132
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 208, 1069
AvaI CYCGRG 2 cut(s) 285, 446
AvrII CCTAGG 1 cut(s) 572
BaeGI GKGCMC 1 cut(s) 1336
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BamHI GGATCC 1 cut(s) 1474
BanI GGYRCC 2 cut(s) 132, 1331
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 2 cut(s) 1013, 1167
BbsI GAAGAC 1 cut(s) 1149
Bbv12I GWGCWC 1 cut(s) 1450
BbvI GCAGC 5 cut(s) 54, 168, 454, 1258, 1495
BccI CCATC 3 cut(s) 310, 364, 839
BceAI ACGGC 2 cut(s) 55, 1447
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 3 cut(s) 318, 933, 1039
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 6 cut(s) 264, 573, 879, 986, 1322, 1395
BfmI CTRYAG 2 cut(s) 1173, 1487
BglII AGATCT 1 cut(s) 553
BisI GCNGC 8 cut(s) 27, 68, 158, 182, 185, 443, 1247, 1484
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 8 cut(s) 28, 69, 159, 183, 186, 444, 1248, 1485
Bme1390I CCNGG 3 cut(s) 318, 933, 1039
BmeT110I CYCGRG 2 cut(s) 285, 446
BmiI GGNNCC 4 cut(s) 134, 283, 1333, 1476
BmrFI CCNGG 3 cut(s) 318, 933, 1039
BmsI GCATC 2 cut(s) 85, 1281
BpiI GAAGAC 1 cut(s) 1149
BpmI CTGGAG 2 cut(s) 239, 828
BpuEI CTTGAG 2 cut(s) 659, 1334
Bsa29I ATCGAT 1 cut(s) 991
BsaJI CCNNGG 2 cut(s) 572, 932
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 5 cut(s) 681, 933, 1285, 1343, 1346
Bse118I RCCGGY 3 cut(s) 8, 135, 153
Bse3DI GCAATG 1 cut(s) 1499
BseBI CCWGG 3 cut(s) 318, 933, 1039
BseCI ATCGAT 1 cut(s) 991
BseDI CCNNGG 2 cut(s) 572, 932
BseGI GGATG 4 cut(s) 100, 229, 424, 1414
BseLI CCNNNNNNNGG 5 cut(s) 681, 933, 1285, 1343, 1346
BseMI GCAATG 1 cut(s) 1499
BseMII CTCAG 4 cut(s) 681, 902, 1214, 1458
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 1336
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 5 cut(s) 54, 168, 454, 1258, 1495
BseYI CCCAGC 1 cut(s) 1479
BsgI GTGCAG 2 cut(s) 1265, 1422
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 3 cut(s) 157, 619, 1109
BshNI GGYRCC 2 cut(s) 132, 1331
BshTI ACCGGT 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 991
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 1450
BsiHKCI CYCGRG 2 cut(s) 285, 446
BsiSI CCGG 3 cut(s) 9, 136, 154
BslI CCNNNNNNNGG 5 cut(s) 681, 933, 1285, 1343, 1346
BsmAI GTCTC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 55, 1042
BsnI GGCC 3 cut(s) 157, 619, 1109
BsoBI CYCGRG 2 cut(s) 285, 446
Bsp1286I GDGCHC 3 cut(s) 286, 1336, 1450
Bsp1407I TGTACA 1 cut(s) 226
BspACI CCGC 7 cut(s) 26, 29, 89, 158, 184, 347, 1215
BspANI GGCC 3 cut(s) 157, 619, 1109
BspCNI CTCAG 4 cut(s) 680, 903, 1215, 1459
BspDI ATCGAT 1 cut(s) 991
BspLI GGNNCC 4 cut(s) 134, 283, 1333, 1476
BspPI GGATC 4 cut(s) 894, 945, 1469, 1482
BspT107I GGYRCC 2 cut(s) 132, 1331
BsrDI GCAATG 1 cut(s) 1499
BsrFI RCCGGY 3 cut(s) 8, 135, 153
BsrGI TGTACA 1 cut(s) 226
BssAI RCCGGY 3 cut(s) 8, 135, 153
BssECI CCNNGG 2 cut(s) 572, 932
BssSI CACGAG 2 cut(s) 1013, 1167
BssT1I CCWWGG 1 cut(s) 572
Bst2BI CACGAG 2 cut(s) 1013, 1167
Bst2UI CCWGG 3 cut(s) 318, 933, 1039
Bst4CI ACNGT 2 cut(s) 126, 354
Bst6I CTCTTC 1 cut(s) 1278
BstAPI GCANNNNNTGC 1 cut(s) 1445
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 4 cut(s) 155, 474, 821, 1386
BstDEI CTNAG 7 cut(s) 487, 667, 838, 911, 1090, 1223, 1467
BstF5I GGATG 4 cut(s) 100, 229, 424, 1414
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 242
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 5 cut(s) 59, 95, 157, 163, 1445
BstNI CCWGG 3 cut(s) 318, 933, 1039
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 3 cut(s) 316, 931, 1037
BstSFI CTRYAG 2 cut(s) 1173, 1487
BstSLI GKGCMC 1 cut(s) 1336
BstV1I GCAGC 5 cut(s) 54, 168, 454, 1258, 1495
BstV2I GAAGAC 1 cut(s) 1149
BstX2I RGATCY 3 cut(s) 553, 937, 1474
BstYI RGATCY 3 cut(s) 553, 937, 1474
BstZI CGGCCG 1 cut(s) 155
Bsu15I ATCGAT 1 cut(s) 991
BsuRI GGCC 3 cut(s) 157, 619, 1109
BsuTUI ATCGAT 1 cut(s) 991
BtsCI GGATG 4 cut(s) 100, 229, 424, 1414
BtsI GCAGTG 2 cut(s) 60, 1125
BtsIMutI CAGTG 2 cut(s) 60, 1125
Cac8I GCNNGC 4 cut(s) 155, 474, 821, 1386
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 3 cut(s) 8, 135, 153
ClaI ATCGAT 1 cut(s) 991
Csp6I GTAC 3 cut(s) 133, 227, 734
CspAI ACCGGT 1 cut(s) 135
CviAII CATG 6 cut(s) 230, 496, 1186, 1327, 1343, 1378
CviQI GTAC 3 cut(s) 133, 227, 734
DdeI CTNAG 7 cut(s) 487, 667, 838, 911, 1090, 1223, 1467
DraIII CACNNNGTG 1 cut(s) 1445
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 1278
EarI CTCTTC 1 cut(s) 1278
EciI GGCGGA 2 cut(s) 44, 1230
EclXI CGGCCG 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 1109
Eco24I GRGCYC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 155
Eco57I CTGAAG 6 cut(s) 521, 609, 851, 1161, 1302, 1311
Eco88I CYCGRG 2 cut(s) 285, 446
EcoRI GAATTC 1 cut(s) 861
EcoRII CCWGG 3 cut(s) 316, 931, 1037
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 6 cut(s) 233, 499, 1189, 1330, 1346, 1381
FatI CATG 6 cut(s) 229, 495, 1185, 1326, 1342, 1377
FauNDI CATATG 2 cut(s) 583, 1180
Fnu4HI GCNGC 8 cut(s) 27, 68, 158, 182, 185, 443, 1247, 1484
FokI GGATG 4 cut(s) 107, 236, 431, 1421
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 8 cut(s) 27, 68, 158, 182, 185, 443, 1247, 1484
FspBI CTAG 6 cut(s) 264, 573, 879, 986, 1322, 1395
GlaI GCGC 1 cut(s) 152
GluI GCNGC 8 cut(s) 27, 68, 158, 182, 185, 443, 1247, 1484
GsaI CCCAGC 1 cut(s) 1483
GsuI CTGGAG 2 cut(s) 239, 828
HaeIII GGCC 3 cut(s) 157, 619, 1109
HapII CCGG 3 cut(s) 9, 136, 154
HhaI GCGC 1 cut(s) 153
Hin1II CATG 6 cut(s) 233, 499, 1189, 1330, 1346, 1381
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 6 cut(s) 250, 671, 714, 913, 1034, 1507
HpaII CCGG 3 cut(s) 9, 136, 154
HphI GGTGA 2 cut(s) 208, 1069
Hpy166II GTNNAC 3 cut(s) 453, 734, 1192
Hpy188I TCNGA 9 cut(s) 399, 613, 658, 670, 912, 942, 966, 1224, 1468
Hpy8I GTNNAC 3 cut(s) 453, 734, 1192
HpyAV CCTTC 8 cut(s) 106, 204, 272, 747, 769, 808, 826, 1132
HpyCH4III ACNGT 2 cut(s) 126, 354
HpyCH4IV ACGT 1 cut(s) 1237
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 95, 157, 163, 1445
HpyF3I CTNAG 7 cut(s) 487, 667, 838, 911, 1090, 1223, 1467
HpySE526I ACGT 1 cut(s) 1237
Hsp92II CATG 6 cut(s) 233, 499, 1189, 1330, 1346, 1381
HspAI GCGC 1 cut(s) 151
KpnI GGTACC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 281, 469, 809
Lsp1109I GCAGC 5 cut(s) 54, 168, 454, 1258, 1495
LweI GCATC 2 cut(s) 85, 1281
MaeI CTAG 6 cut(s) 264, 573, 879, 986, 1322, 1395
MaeII ACGT 1 cut(s) 1237
MaeIII GTNAC 2 cut(s) 79, 1057
MboII GAAGA 6 cut(s) 434, 524, 1152, 1154, 1295, 1301
MflI RGATCY 3 cut(s) 553, 937, 1474
MhlI GDGCHC 3 cut(s) 286, 1336, 1450
MluCI AATT 8 cut(s) 15, 594, 852, 861, 905, 1047, 1227, 1350
MlyI GAGTC 3 cut(s) 244, 922, 1501
MmeI TCCRAC 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 153
MseI TTAA 4 cut(s) 428, 507, 872, 975
MspI CCGG 3 cut(s) 9, 136, 154
MspR9I CCNGG 3 cut(s) 318, 933, 1039
Mva1269I GAATGC 2 cut(s) 55, 1042
MvaI CCWGG 3 cut(s) 318, 933, 1039
MwoI GCNNNNNNNGC 5 cut(s) 59, 95, 157, 163, 1445
NaeI GCCGGC 1 cut(s) 155
NdeI CATATG 2 cut(s) 583, 1180
NgoMIV GCCGGC 1 cut(s) 153
NlaIII CATG 6 cut(s) 233, 499, 1189, 1330, 1346, 1381
NlaIV GGNNCC 4 cut(s) 134, 283, 1333, 1476
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 1 cut(s) 499
PceI AGGCCT 1 cut(s) 1109
PctI GAATGC 2 cut(s) 55, 1042
PdiI GCCGGC 1 cut(s) 155
PfeI GAWTC 3 cut(s) 671, 714, 1034
PinAI ACCGGT 1 cut(s) 135
PkrI GCNGC 8 cut(s) 28, 69, 159, 183, 186, 444, 1248, 1485
PleI GAGTC 3 cut(s) 244, 921, 1501
PpsI GAGTC 3 cut(s) 244, 921, 1501
PsiI TTATAA 2 cut(s) 789, 1233
Psp6I CCWGG 3 cut(s) 316, 931, 1037
PspFI CCCAGC 1 cut(s) 1479
PspGI CCWGG 3 cut(s) 316, 931, 1037
PspN4I GGNNCC 4 cut(s) 134, 283, 1333, 1476
PsuI RGATCY 3 cut(s) 553, 937, 1474
RsaI GTAC 3 cut(s) 134, 228, 735
RsaNI GTAC 3 cut(s) 133, 227, 734
SaqAI TTAA 4 cut(s) 428, 507, 872, 975
SatI GCNGC 8 cut(s) 27, 68, 158, 182, 185, 443, 1247, 1484
SchI GAGTC 3 cut(s) 244, 922, 1501
ScrFI CCNGG 3 cut(s) 318, 933, 1039
SduI GDGCHC 3 cut(s) 286, 1336, 1450
SfaNI GCATC 2 cut(s) 85, 1281
SfcI CTRYAG 2 cut(s) 1173, 1487
SmlI CTYRAG 2 cut(s) 638, 1313
SmoI CTYRAG 2 cut(s) 638, 1313
Sse9I AATT 8 cut(s) 15, 594, 852, 861, 905, 1047, 1227, 1350
SseBI AGGCCT 1 cut(s) 1109
SsiI CCGC 7 cut(s) 26, 29, 89, 158, 184, 347, 1215
SspMI CTAG 6 cut(s) 264, 573, 879, 986, 1322, 1395
StuI AGGCCT 1 cut(s) 1109
StyD4I CCNGG 3 cut(s) 316, 931, 1037
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 2 cut(s) 126, 354
TaiI ACGT 1 cut(s) 1240
TaqI TCGA 3 cut(s) 269, 305, 991
TasI AATT 8 cut(s) 15, 594, 852, 861, 905, 1047, 1227, 1350
TatI WGTACW 1 cut(s) 226
TauI GCSGC 3 cut(s) 29, 160, 187
TfiI GAWTC 3 cut(s) 671, 714, 1034
Tru1I TTAA 4 cut(s) 428, 507, 872, 975
Tru9I TTAA 4 cut(s) 428, 507, 872, 975
TscAI CASTG 2 cut(s) 60, 1132
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 5 cut(s) 67, 181, 442, 1246, 1483
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 3 cut(s) 17, 125, 435
TspRI CASTG 2 cut(s) 60, 1132
XapI RAATTY 2 cut(s) 861, 1227
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 1077
XmaJI CCTAGG 1 cut(s) 572
XspI CTAG 6 cut(s) 264, 573, 879, 986, 1322, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.