Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007392

Physical Location & Seq

Genomic Coordinates Reverse (-)

6447154 .. 6452542

Gene Structure 5389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGTCCCTCCTCCGCAGAACCTTCTTCCCTCTCCTCCCTCTCCGCTCCAAACCCCTCCCTCTTCTCTCCCACACCCTCCTCTTTCTTAAACCCTCTCTCCCTAAACCCCTCCCCATCCACACCTCCATTCTCTCCTCCCCAATTTCATCTTCAGCTTCAGCTTCAGCTTCTTCCACAACCCCACCTCCCCTAGAAACCCTCACTCCCAAACCCCAATCTCCCCTCCTCTGGGTCCCCCGCACCGCCTTTTGCGGCCAGCTCTCCGCCGATGACGTCGGCAAACGCGTCACTCTCTGCGGCTGGGTCGCCCTCCACCGCGTCCACGGCGGCCTCACTTTCCTCAACCTCAGGGACCACACCGGCTCCGTCCAGGTCACCACTCTCCCCGACGCTTTTCCCGAGGCGCATTCCGCCGTCAACGACTTGAGGCTCGAGTACGTCGTCGCCGTTGAAGGCCTCGTCCGGTCTAGACCGCCCGACTCCGTCAACAAGAAAATGAAAACCGGCTCAATTGAGATTGCGGCGGAGAATGTTCAAGTGTTGAATGCAGTGAGGGCAAAGCTGCCATTTTTAGTTACTACTGTGGAGGATGCAAAGGATTCGGTGAAGGAGGAGATTCGGTTAAGGTACCGGTGTCTTGACTTACGCCGGCAGCAAATGCAATCCAACATAATGCTGCGGCATAAGGTGGTGAAACTGATGAGAAGGTATCTAGAGGATGTGCATGATTTCGTGGAGGTTGAGACTCCAATACTCTCTAGATCTACACCTGAAGGAGCCCGAGATTATTTAGTACCCTCGAGAGTTCAGCCAGGGACATTTTATGCTTTGCCTCAAAGTCCGCAACTGTTCAAGCAAATGTTGATGGTTTCTGGTTTTGATAAGTATTATCAGATAGCAAGATGTTTTCGAGATGAAGATTTACGAGCTGATAGGCAGCCTGAGTTTACACAGCTTGATATGGAGCTCGCTTTCACTCCTTTGGAGGACATGCTGAGGCTTAATGAAGATTTGATTAGAAAGGTTTTCTTAGAGATCAAAGGTGTACATCTCCCAAACCCTTTTCCTAGGCTTACGCATGCTGAAGCAATGAGTCGATATGGTTCGGACAGGCCAGATATTAGATTTGATCTTGAGCTGAAAGATGTATCTGATATTTTCTCAGATTCCACATTCAGGGTTTTTGCTGATACTTTGACAAGTGGAGGAATTATAAAAGTTTTATGTGTGCCTTCTGGAGCTAAAAGATATTCGAACACAGCTCTAAAGAAGGGAGATATTTATAATCAAGCAATCAAGTCTGGAGCGAAGGGTTTGCCTTTCCTGAAGGTCTTGGATGATGGTGGAATTGAGGGAATTCCTGCATTAACATCTAGTTTGAATCAAACAAAGATAGAGCAATTTCTGAGTCGTTGCTCTGCCAGACCAGGGGATCTGATCTTGTTTGCAGTGGGTCATCAGGCATCAGTTAATAAAACCCTAGATCGATTACGGGTCTTTGTTGCACATGAGCTTGATTTGATTGATGATTCCAGGCATTCAGTTCTGTGGGTGACTGATTTCCCAATGTTTGAATGGAATGATTTAGAGCAAAGGCTCGAGGCCTTGCACCACCCCTTCACTGCCCCGAACCCTGAAGACATAAATGATCTTTCTACAGCTCGTGCTTTAGCGTATGACATGGTTTACAATGGAGTTGAGATTGGTGGCGGAAGTCTGAGAATTTATAAACGTGAGGTGCAGCAAAAGGTTTTGGAAATTGTTGGCATCTCCCCTGAAGAGGCTGAAGCAAAGTTTGGCTATCTTCTTGAGGCATTAGACATGGGTGCCCCTCCACATGGAGGAATTGCCTATGGCTTGGATAGATTGGTCATGTTGTTGGCCGGTGCTAGTTCCATTAGGGATGTCATAGCTTTCCCGAAAACTACAACCGCACAATGTGCCCTTACCAGATCGCCGTCTGAGGTGGATCCCCAGCAGCTAAAGGATTTGTCATTTCAGACTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

GAD tRNA-synt_2 tRNA_anti-codon

Protein Analysis

669

Amino Acids

74.73

Weight (kDa)

6.98

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	96 - 181	3.3e-13	OB-fold nucleic acid binding domain
tRNA-synt_2	PF00152	203 - 642	6e-122	tRNA synthetases class II (D, K and N)
GAD	PF02938	395 - 494	1.7e-18	GAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33760 AT4G33760
fragaria_vesca	FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040
malus_domestica	MD10G1112200.v1.1
prunus_persica	Prupe.8G151800_v2.0.a1
pyrus_communis	pycom10g09720
rosa_chinensis	RchiOBHm_Chr6g0247831
rosa_laevigata	RLG00000015175
rosa_multiflora	Rmu_sc0001048.1_g000005 Rmu_sc0035971.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433200 Rroxscaffold_7G00213610
rosa_rugosa	Rorug05G0529400
rosa_samantha	Rh6AG044100 Rh6BG038800 Rh6CG037600 Rh6DG034600
rosa_wichuraiana	Rw6G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1214, 1284, 1728
AatII	GACGTC	1 cut(s)	276
Acc65I	GGTACC	1 cut(s)	627
AccB1I	GGYRCC	2 cut(s)	627, 1826
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	2 cut(s)	285, 318
AclWI	GGATC	3 cut(s)	1440, 1964, 1977
AcoI	YGGCCR	2 cut(s)	253, 1881
AcsI	RAATTY	2 cut(s)	1356, 1722
AcuI	CTGAAG	9 cut(s)	135, 141, 147, 792, 1104, 1346, 1656, 1797, 1806
AcyI	GRCGYC	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	1940
AfaI	GTAC	4 cut(s)	437, 629, 795, 1047
AfiI	CCNNNNNNNGG	7 cut(s)	228, 229, 1176, 1428, 1780, 1838, 1841
AflIII	ACRYGT	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	452, 536, 544, 853, 1381, 1574
AjnI	CCWGG	4 cut(s)	369, 811, 1426, 1532
AjuI	GAANNNNNNNTTGG	4 cut(s)	133, 165, 1779, 1811
Alw21I	GWGCWC	1 cut(s)	969
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	3 cut(s)	1440, 1964, 1977
Ama87I	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
AoxI	GGCC	6 cut(s)	253, 328, 454, 1112, 1602, 1881
ApeKI	GCWGC	6 cut(s)	562, 652, 676, 937, 1741, 1978
ApoI	RAATTY	2 cut(s)	1356, 1722
AsiGI	ACCGGT	1 cut(s)	630
Asp718I	GGTACC	1 cut(s)	627
AspA2I	CCTAGG	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	232, 352
AsuHPI	GGTGA	4 cut(s)	367, 616, 703, 1564
AsuII	TTCGAA	1 cut(s)	1253
AvaI	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
AvaII	GGWCC	2 cut(s)	232, 352
AvrII	CCTAGG	1 cut(s)	1067
AxyI	CCTNAGG	1 cut(s)	347
BaeGI	GKGCMC	2 cut(s)	1831, 1945
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BamHI	GGATCC	1 cut(s)	1969
BanI	GGYRCC	2 cut(s)	627, 1826
BanII	GRGCYC	2 cut(s)	781, 969
BauI	CACGAG	1 cut(s)	1662
BbsI	GAAGAC	1 cut(s)	1644
Bbv12I	GWGCWC	1 cut(s)	969
BbvCI	CCTCAGC	1 cut(s)	995
BbvI	GCAGC	6 cut(s)	549, 663, 664, 949, 1753, 1990
BccI	CCATC	3 cut(s)	122, 859, 1334
BceAI	ACGGC	4 cut(s)	340, 398, 431, 1942
BcgI	CGANNNNNNTGC	4 cut(s)	582, 616, 1297, 1331
BciT130I	CCWGG	4 cut(s)	371, 813, 1428, 1534
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	8 cut(s)	191, 468, 713, 759, 1068, 1374, 1481, 1890
BfmI	CTRYAG	1 cut(s)	1656
BglII	AGATCT	1 cut(s)	761
BlnI	CCTAGG	1 cut(s)	1067
Bme1390I	CCNGG	4 cut(s)	371, 813, 1428, 1534
Bme18I	GGWCC	2 cut(s)	232, 352
BmeT110I	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
BmgT120I	GGNCC	2 cut(s)	232, 352
BmiI	GGNNCC	8 cut(s)	233, 234, 353, 364, 629, 778, 1828, 1971
BmrFI	CCNGG	4 cut(s)	371, 813, 1428, 1534
BmsI	GCATC	3 cut(s)	580, 1472, 1776
BpiI	GAAGAC	1 cut(s)	1644
BpmI	CTGGAG	2 cut(s)	1257, 1323
Bpu10I	CCTNAGC	1 cut(s)	995
Bpu14I	TTCGAA	1 cut(s)	1253
BpuEI	CTTGAG	3 cut(s)	445, 1154, 1829
Bsa29I	ATCGAT	1 cut(s)	1486
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	5 cut(s)	322, 399, 812, 1067, 1427
BsaWI	WCCGGW	2 cut(s)	462, 630
Bsc4I	CCNNNNNNNGG	7 cut(s)	228, 229, 1176, 1428, 1780, 1838, 1841
Bse118I	RCCGGY	5 cut(s)	359, 503, 630, 648, 1883
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	1095
BseBI	CCWGG	4 cut(s)	371, 813, 1428, 1534
BseCI	ATCGAT	1 cut(s)	1486
BseDI	CCNNGG	5 cut(s)	322, 399, 812, 1067, 1427
BseGI	GGATG	5 cut(s)	114, 595, 724, 1342, 1909
BseLI	CCNNNNNNNGG	7 cut(s)	228, 229, 1176, 1428, 1780, 1838, 1841
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	7 cut(s)	361, 933, 986, 1176, 1397, 1709, 1953
BseRI	GAGGAG	5 cut(s)	23, 68, 124, 215, 626
BseSI	GKGCMC	2 cut(s)	1831, 1945
BseXI	GCAGC	6 cut(s)	549, 663, 664, 949, 1753, 1990
BseYI	CCCAGC	2 cut(s)	300, 1974
BsgI	GTGCAG	1 cut(s)	1760
Bsh1236I	CGCG	2 cut(s)	285, 318
BshFI	GGCC	6 cut(s)	255, 330, 456, 1114, 1604, 1883
BshNI	GGYRCC	2 cut(s)	627, 1826
BshTI	ACCGGT	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	1486
BsiHKAI	GWGCWC	1 cut(s)	969
BsiHKCI	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
BsiSI	CCGG	6 cut(s)	360, 463, 504, 631, 649, 1884
BslFI	GGGAC	3 cut(s)	218, 365, 829
BslI	CCNNNNNNNGG	7 cut(s)	228, 229, 1176, 1428, 1780, 1838, 1841
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	3 cut(s)	218, 365, 829
BsmI	GAATGC	3 cut(s)	406, 550, 1537
BsnI	GGCC	6 cut(s)	255, 330, 456, 1114, 1604, 1883
BsoBI	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
Bsp119I	TTCGAA	1 cut(s)	1253
Bsp1286I	GDGCHC	4 cut(s)	781, 969, 1831, 1945
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp143I	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
BspANI	GGCC	6 cut(s)	255, 330, 456, 1114, 1604, 1883
BspCNI	CTCAG	7 cut(s)	360, 934, 987, 1175, 1398, 1710, 1954
BspDI	ATCGAT	1 cut(s)	1486
BspFNI	CGCG	2 cut(s)	285, 318
BspLI	GGNNCC	8 cut(s)	233, 234, 353, 364, 629, 778, 1828, 1971
BspPI	GGATC	3 cut(s)	1440, 1964, 1977
BspT104I	TTCGAA	1 cut(s)	1253
BspT107I	GGYRCC	2 cut(s)	627, 1826
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	1095
BsrFI	RCCGGY	5 cut(s)	359, 503, 630, 648, 1883
BsrGI	TGTACA	1 cut(s)	1045
BssAI	RCCGGY	5 cut(s)	359, 503, 630, 648, 1883
BssECI	CCNNGG	5 cut(s)	322, 399, 812, 1067, 1427
BssMI	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	1662
BssT1I	CCWWGG	1 cut(s)	1067
Bst2BI	CACGAG	1 cut(s)	1662
Bst2UI	CCWGG	4 cut(s)	371, 813, 1428, 1534
Bst4CI	ACNGT	2 cut(s)	583, 849
Bst6I	CTCTTC	2 cut(s)	66, 1773
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	2 cut(s)	658, 1940
BstAUI	TGTACA	1 cut(s)	1045
BstBI	TTCGAA	1 cut(s)	1253
BstC8I	GCNNGC	4 cut(s)	257, 650, 969, 1080
BstDEI	CTNAG	8 cut(s)	347, 942, 995, 1030, 1162, 1406, 1718, 1962
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	5 cut(s)	114, 595, 724, 1342, 1909
BstFNI	CGCG	2 cut(s)	285, 318
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	9 cut(s)	764, 1038, 1132, 1435, 1440, 1486, 1651, 1955, 1972
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 410, 554, 658, 1940
BstNI	CCWGG	4 cut(s)	371, 813, 1428, 1534
BstNSI	RCATGY	2 cut(s)	994, 1082
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	4 cut(s)	369, 811, 1426, 1532
BstSFI	CTRYAG	1 cut(s)	1656
BstSLI	GKGCMC	2 cut(s)	1831, 1945
BstUI	CGCG	2 cut(s)	285, 318
BstV1I	GCAGC	6 cut(s)	549, 663, 664, 949, 1753, 1990
BstV2I	GAAGAC	1 cut(s)	1644
BstX2I	RGATCY	3 cut(s)	761, 1432, 1969
BstYI	RGATCY	3 cut(s)	761, 1432, 1969
Bsu15I	ATCGAT	1 cut(s)	1486
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	6 cut(s)	255, 330, 456, 1114, 1604, 1883
BsuTUI	ATCGAT	1 cut(s)	1486
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	5 cut(s)	114, 595, 724, 1342, 1909
BtsI	GCAGTG	3 cut(s)	555, 1455, 1620
BtsIMutI	CAGTG	3 cut(s)	555, 1455, 1620
Cac8I	GCNNGC	4 cut(s)	257, 650, 969, 1080
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	5 cut(s)	359, 503, 630, 648, 1883
Cfr13I	GGNCC	2 cut(s)	232, 352
ClaI	ATCGAT	1 cut(s)	1486
CseI	GACGC	3 cut(s)	274, 307, 398
Csp6I	GTAC	4 cut(s)	436, 628, 794, 1046
CspAI	ACCGGT	1 cut(s)	630
CviAII	CATG	8 cut(s)	725, 991, 1079, 1508, 1681, 1822, 1838, 1873
CviQI	GTAC	4 cut(s)	436, 628, 794, 1046
DdeI	CTNAG	8 cut(s)	347, 942, 995, 1030, 1162, 1406, 1718, 1962
DpnI	GATC	9 cut(s)	763, 1037, 1131, 1434, 1439, 1485, 1650, 1954, 1971
DpnII	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
DraIII	CACNNNGTG	1 cut(s)	1940
EaeI	YGGCCR	2 cut(s)	253, 1881
Eam1104I	CTCTTC	2 cut(s)	66, 1773
EarI	CTCTTC	2 cut(s)	66, 1773
EciI	GGCGGA	4 cut(s)	253, 400, 539, 1725
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	1 cut(s)	1067
Eco147I	AGGCCT	2 cut(s)	456, 1604
Eco24I	GRGCYC	2 cut(s)	781, 969
Eco47I	GGWCC	2 cut(s)	232, 352
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	9 cut(s)	135, 141, 147, 792, 1104, 1346, 1656, 1797, 1806
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	5 cut(s)	398, 431, 780, 799, 1598
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	1356
EcoRII	CCWGG	4 cut(s)	369, 811, 1426, 1532
EcoT14I	CCWWGG	1 cut(s)	1067
EcoT38I	GRGCYC	2 cut(s)	781, 969
ErhI	CCWWGG	1 cut(s)	1067
FaeI	CATG	8 cut(s)	728, 994, 1082, 1511, 1684, 1825, 1841, 1876
FalI	AAGNNNNNCTT	2 cut(s)	1013, 1045
FaqI	GGGAC	3 cut(s)	218, 365, 829
FatI	CATG	8 cut(s)	724, 990, 1078, 1507, 1680, 1821, 1837, 1872
FauI	CCCGC	1 cut(s)	245
FokI	GGATG	5 cut(s)	101, 602, 731, 1349, 1916
FriOI	GRGCYC	2 cut(s)	781, 969
FspBI	CTAG	8 cut(s)	191, 468, 713, 759, 1068, 1374, 1481, 1890
GlaI	GCGC	1 cut(s)	405
GsaI	CCCAGC	2 cut(s)	304, 1978
GsuI	CTGGAG	2 cut(s)	1257, 1323
HaeIII	GGCC	6 cut(s)	255, 330, 456, 1114, 1604, 1883
HapII	CCGG	6 cut(s)	360, 463, 504, 631, 649, 1884
HgaI	GACGC	3 cut(s)	274, 307, 398
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	8 cut(s)	728, 994, 1082, 1511, 1684, 1825, 1841, 1876
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	418, 487
HindII	GTYRAC	2 cut(s)	418, 487
HpaII	CCGG	6 cut(s)	360, 463, 504, 631, 649, 1884
HphI	GGTGA	4 cut(s)	367, 616, 703, 1564
Hpy166II	GTNNAC	6 cut(s)	322, 418, 487, 948, 1046, 1687
Hpy188I	TCNGA	9 cut(s)	894, 1108, 1153, 1165, 1407, 1437, 1719, 1963, 2001
Hpy8I	GTNNAC	6 cut(s)	322, 418, 487, 948, 1046, 1687
Hpy99I	CGWCG	4 cut(s)	278, 392, 443, 446
HpyCH4III	ACNGT	2 cut(s)	583, 849
HpyCH4IV	ACGT	3 cut(s)	273, 438, 1732
HpyCH4V	TGCA	9 cut(s)	548, 593, 661, 724, 1364, 1448, 1505, 1609, 1741
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 410, 554, 658, 1940
HpyF3I	CTNAG	8 cut(s)	347, 942, 995, 1030, 1162, 1406, 1718, 1962
HpySE526I	ACGT	3 cut(s)	273, 438, 1732
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	8 cut(s)	728, 994, 1082, 1511, 1684, 1825, 1841, 1876
HspAI	GCGC	1 cut(s)	404
KflI	GGGWCCC	1 cut(s)	232
KpnI	GGTACC	1 cut(s)	631
KroI	GCCGGC	1 cut(s)	648
KroNI	GCCGGC	1 cut(s)	650
Kzo9I	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
LmnI	GCTCC	6 cut(s)	50, 368, 776, 964, 1238, 1304
Lsp1109I	GCAGC	6 cut(s)	549, 663, 664, 949, 1753, 1990
LweI	GCATC	3 cut(s)	580, 1472, 1776
MaeI	CTAG	8 cut(s)	191, 468, 713, 759, 1068, 1374, 1481, 1890
MaeII	ACGT	3 cut(s)	273, 438, 1732
MaeIII	GTNAC	4 cut(s)	286, 373, 574, 1552
MalI	GATC	9 cut(s)	763, 1037, 1131, 1434, 1439, 1485, 1650, 1954, 1971
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
MboII	GAAGA	9 cut(s)	16, 53, 141, 162, 929, 1019, 1649, 1790, 1796
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	3 cut(s)	761, 1432, 1969
MhlI	GDGCHC	4 cut(s)	781, 969, 1831, 1945
MluCI	AATT	9 cut(s)	141, 510, 1209, 1347, 1356, 1400, 1722, 1758, 1845
MluI	ACGCGT	1 cut(s)	283
MlyI	GAGTC	5 cut(s)	473, 739, 1102, 1417, 1996
MmeI	TCCRAC	1 cut(s)	690
MroNI	GCCGGC	1 cut(s)	648
MseI	TTAA	5 cut(s)	87, 623, 1002, 1367, 1470
MspI	CCGG	6 cut(s)	360, 463, 504, 631, 649, 1884
MspR9I	CCNGG	4 cut(s)	371, 813, 1428, 1534
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	3 cut(s)	406, 550, 1537
MvaI	CCWGG	4 cut(s)	371, 813, 1428, 1534
MvnI	CGCG	2 cut(s)	285, 318
MwoI	GCNNNNNNNGC	5 cut(s)	324, 410, 554, 658, 1940
NaeI	GCCGGC	1 cut(s)	650
NdeII	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
NgoMIV	GCCGGC	1 cut(s)	648
NlaIII	CATG	8 cut(s)	728, 994, 1082, 1511, 1684, 1825, 1841, 1876
NlaIV	GGNNCC	8 cut(s)	233, 234, 353, 364, 629, 778, 1828, 1971
NmuCI	GTSAC	3 cut(s)	286, 373, 1552
NspI	RCATGY	2 cut(s)	994, 1082
NspV	TTCGAA	1 cut(s)	1253
PaeI	GCATGC	1 cut(s)	1082
PaeR7I	CTCGAG	3 cut(s)	431, 799, 1598
PceI	AGGCCT	2 cut(s)	456, 1604
PcsI	WCGNNNNNNNCGW	4 cut(s)	282, 396, 438, 444
PctI	GAATGC	3 cut(s)	406, 550, 1537
PdiI	GCCGGC	1 cut(s)	650
PfeI	GAWTC	5 cut(s)	599, 616, 1166, 1381, 1529
PflFI	GACNNNGTC	1 cut(s)	482
PinAI	ACCGGT	1 cut(s)	630
PleI	GAGTC	5 cut(s)	473, 739, 1101, 1416, 1996
PpsI	GAGTC	5 cut(s)	473, 739, 1101, 1416, 1996
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	3 cut(s)	1214, 1284, 1728
Psp124BI	GAGCTC	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	4 cut(s)	369, 811, 1426, 1532
PspEI	GGTNACC	1 cut(s)	373
PspFI	CCCAGC	2 cut(s)	300, 1974
PspGI	CCWGG	4 cut(s)	369, 811, 1426, 1532
PspN4I	GGNNCC	8 cut(s)	233, 234, 353, 364, 629, 778, 1828, 1971
PspPI	GGNCC	2 cut(s)	232, 352
PspPPI	RGGWCCY	1 cut(s)	232
PspXI	VCTCGAGB	2 cut(s)	431, 1598
PsuI	RGATCY	3 cut(s)	761, 1432, 1969
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	4 cut(s)	437, 629, 795, 1047
RsaNI	GTAC	4 cut(s)	436, 628, 794, 1046
SacI	GAGCTC	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	87, 623, 1002, 1367, 1470
Sau3AI	GATC	9 cut(s)	761, 1035, 1129, 1432, 1437, 1483, 1648, 1952, 1969
Sau96I	GGNCC	2 cut(s)	232, 352
SchI	GAGTC	5 cut(s)	473, 739, 1102, 1417, 1996
ScrFI	CCNGG	4 cut(s)	371, 813, 1428, 1534
SduI	GDGCHC	4 cut(s)	781, 969, 1831, 1945
SfaNI	GCATC	3 cut(s)	580, 1472, 1776
SfcI	CTRYAG	1 cut(s)	1656
Sfr274I	CTCGAG	3 cut(s)	431, 799, 1598
SfuI	TTCGAA	1 cut(s)	1253
SinI	GGWCC	2 cut(s)	232, 352
SlaI	CTCGAG	3 cut(s)	431, 799, 1598
SmlI	CTYRAG	6 cut(s)	424, 431, 799, 1133, 1598, 1808
SmoI	CTYRAG	6 cut(s)	424, 431, 799, 1133, 1598, 1808
SphI	GCATGC	1 cut(s)	1082
Sse9I	AATT	9 cut(s)	141, 510, 1209, 1347, 1356, 1400, 1722, 1758, 1845
SseBI	AGGCCT	2 cut(s)	456, 1604
SspMI	CTAG	8 cut(s)	191, 468, 713, 759, 1068, 1374, 1481, 1890
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	2 cut(s)	456, 1604
StyD4I	CCNGG	4 cut(s)	369, 811, 1426, 1532
StyI	CCWWGG	1 cut(s)	1067
TaaI	ACNGT	2 cut(s)	583, 849
TaiI	ACGT	3 cut(s)	276, 441, 1735
TaqI	TCGA	7 cut(s)	432, 800, 910, 1096, 1253, 1486, 1599
TasI	AATT	9 cut(s)	141, 510, 1209, 1347, 1356, 1400, 1722, 1758, 1845
TatI	WGTACW	1 cut(s)	1045
TauI	GCSGC	5 cut(s)	255, 300, 330, 524, 682
TfiI	GAWTC	5 cut(s)	599, 616, 1166, 1381, 1529
Tru1I	TTAA	5 cut(s)	87, 623, 1002, 1367, 1470
Tru9I	TTAA	5 cut(s)	87, 623, 1002, 1367, 1470
TscAI	CASTG	3 cut(s)	555, 1455, 1627
TseFI	GTSAC	3 cut(s)	286, 373, 1552
TseI	GCWGC	6 cut(s)	562, 652, 676, 937, 1741, 1978
Tsp45I	GTSAC	3 cut(s)	286, 373, 1552
TspDTI	ATGAA	4 cut(s)	135, 512, 930, 1020
TspGWI	ACGGA	2 cut(s)	355, 472
TspRI	CASTG	3 cut(s)	555, 1455, 1627
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	232, 352
XapI	RAATTY	2 cut(s)	1356, 1722
XbaI	TCTAGA	3 cut(s)	467, 712, 758
XceI	RCATGY	2 cut(s)	994, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1572
XhoI	CTCGAG	3 cut(s)	431, 799, 1598
XmaJI	CCTAGG	1 cut(s)	1067
XspI	CTAG	8 cut(s)	191, 468, 713, 759, 1068, 1374, 1481, 1890
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.