Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007392

Physical Location & Seq

Genomic Coordinates Reverse (-)

3842541 .. 3848355

Gene Structure 5815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGTCCCTCCTCCGCAGAACCTTCTTCCCTCTCCTCCCTCTCCGCTCCAAACCCTTCCCTCTTCTCTCCCACACCCTCCTCTTTCTTAAACCCTCTCTCCCTAAACCCCTCCCCATCCACACCTCCATTCTCTCCTCCCCAATTTCATCTTCAGCTTCACCTTCTTCCACAACCCCACCTCCCCCAGAAACCCTCATTCCCAATCCCCCATCCCCCCTCCTGTGGGTCCCCCGCACCGCCTTCTGCGGCCAGCTCTCCGCCGATGACGTCGGCAAACGCGTCACTCTCTGCGGCTGGGTCGCCCTCCACCGCGTCCACGGCGGCCTCACTTTCCTCAACCTCAGGGACCACACCGGCTCCGTCCAGGTCACCACTCTCCCCGACGCATTTCCCGAGGCGCATTCCGCCATCAACGACCTGAGGCTCGAGTACGTCGTCGCCGTTGAAGGCCTCATCCGGTCTCGACCGCCCGACTCTGTCAACAAGAAAATGAAAACCGGCTCAGTTGAGATTGCGGCGGAGAATGTTCAAGTGTTGAATGCAGTGAGGGCAAAGCTGCCATTTTTGGTTACTACTGTGGAGGATGCAAAGGATTCGGTGAAGGAGGAGATTCGGTTAAGGTACCGGTGTCTTGACTTACGCCGGCAGCAAATGCAATCCAACATAATGCTGCGGCATAAGGTGGTGAAACTGATGAGAAGGTATCTAGAGGATGTGCATGATTTCGTGGAGGTTGAGACTCCAATACTCTCTAGATCTACACCTGAAGGAGCCCGAGATTATTTAGTACCCTCGAGAGTTCAGCCAGGGACATTTTATGCTTTGCCTCAAAGTCCGCAACTGTTCAAGCAAATGTTGATGGTTTCTGGTTTTGATAAGTATTATCAGATAGCAAGATGTTTTCGAGATGAAGATTTACGAGCTGATAGGCAGCCTGAGTTTACACAGCTTGATATGGAGCTCGCTTTCACTCCTTTGGAGGACATGCTGAGGCTTAATGAAGATTTGATTAGAAAGGTTTTCTTAGAGATCAAAGGTGTACATCTCCCAAACCCTTTTCCAAGGCTTACGTATGCTGAAGCAATGAGTCGATATGGTTCGGACAGGCCAGATATTAGATTTGATCTTGAGCTGAAAGATGTATCTGATATTTTCTCAGATTCCACATTCAGGGTTTTTGCTGATACTTTGACAAGTGGAGGAATTATAAAAGTTTTATGTGTGCCTTCTGGAGCTAAAAGATATTCGAACACTGCTCTAAAGAAGGGAGATATTTATAATCAAGCAATCAAGTCTGGAGCGAAGGGTTTGCCTTTCCTGAAGGTCTTGGATGATGGTGGAATTGAGGGAATTCCTGCATTAACATCTAGTTTGGATCAAACAAAGATAGAGCAATTTCTGCGTCGTTGCTCTGCCAGACCAGGGGATCTGATCTTGTTTGCAGTGGGTCATCAGGCATCAGTTAATAAAACCCTAGATCGATTACGGGTCTTTGTTGCACATGAGCTTGATTTGATTGATGATTCCAGGCATTCAGTTCTGTGGGTGACTGATTTCCCAATGTTTGAATGGAATGATTTAGAGCAAAGGCTCGAGGCCTTGCACCACCCCTTCACTGCCCCGAACCCTGAAGACATAAATGATCTTTCTACAGCTCGTGCTTTAGCGTATGACATGGTTTACAATGGAGTTGAGATTGGTGGCGGAAGTCTGAGAATTTATAAACGTGAGGTGCAGCAAAAGGTTTTGGAAATTGTTGGCATCTCCCCTGAAGAGGCTGAAGCAAAGTTTGGCTATCTTCTTGAGGCATTAGACATGGGTGCCCCTCCACATGGAGGAATCGCCTATGGCTTGGATAGATTGGTCATGTTGTTGGCCGGTGCTAGTTCCATTAGGGATGTCATAGCTTTCCCGAAAACTACAACCGCACAATGTGCCCTTACCAGATCACCGTCTGAGGTGGATCCCCAGCAGCTAAAGGATTTGTCATTTCAGACTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

GAD tRNA-synt_2 tRNA_anti-codon

Protein Analysis

667

Amino Acids

74.69

Weight (kDa)

6.75

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	94 - 179	6.4e-13	OB-fold nucleic acid binding domain
tRNA-synt_2	PF00152	201 - 640	1e-122	tRNA synthetases class II (D, K and N)
GAD	PF02938	393 - 492	1e-18	GAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33760 AT4G33760
fragaria_vesca	FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040
malus_domestica	MD10G1112200.v1.1
prunus_persica	Prupe.8G151800_v2.0.a1
pyrus_communis	pycom10g09720
rosa_chinensis	RchiOBHm_Chr6g0247831
rosa_laevigata	RLG00000015175
rosa_multiflora	Rmu_sc0001048.1_g000005 Rmu_sc0035971.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433200 Rroxscaffold_7G00213610
rosa_rugosa	Rorug05G0529400
rosa_samantha	Rh6AG044100 Rh6BG038800 Rh6CG037600 Rh6DG034600
rosa_wichuraiana	Rw6G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1208, 1278, 1722
AatII	GACGTC	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	621, 1820
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	2 cut(s)	279, 312
AclWI	GGATC	4 cut(s)	1383, 1434, 1958, 1971
AcoI	YGGCCR	2 cut(s)	247, 1875
AcsI	RAATTY	2 cut(s)	1350, 1716
AcuI	CTGAAG	7 cut(s)	135, 786, 1098, 1340, 1650, 1791, 1800
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	1934
AfaI	GTAC	4 cut(s)	431, 623, 789, 1041
AfiI	CCNNNNNNNGG	7 cut(s)	222, 223, 1170, 1422, 1774, 1832, 1835
AflIII	ACRYGT	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	5 cut(s)	446, 530, 538, 847, 1568
AjnI	CCWGG	4 cut(s)	363, 805, 1420, 1526
AjuI	GAANNNNNNNTTGG	4 cut(s)	133, 165, 1773, 1805
Alw21I	GWGCWC	1 cut(s)	963
Alw26I	GTCTC	2 cut(s)	465, 731
AlwI	GGATC	4 cut(s)	1383, 1434, 1958, 1971
Ama87I	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
AoxI	GGCC	6 cut(s)	247, 322, 448, 1106, 1596, 1875
ApeKI	GCWGC	6 cut(s)	556, 646, 670, 931, 1735, 1972
ApoI	RAATTY	2 cut(s)	1350, 1716
AsiGI	ACCGGT	1 cut(s)	624
Asp718I	GGTACC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	226, 346
AsuHPI	GGTGA	6 cut(s)	150, 361, 610, 697, 1558, 1941
AsuII	TTCGAA	1 cut(s)	1247
AvaI	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
AvaII	GGWCC	2 cut(s)	226, 346
AxyI	CCTNAGG	2 cut(s)	341, 419
BaeGI	GKGCMC	2 cut(s)	1825, 1939
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BamHI	GGATCC	1 cut(s)	1963
BanI	GGYRCC	2 cut(s)	621, 1820
BanII	GRGCYC	2 cut(s)	775, 963
BauI	CACGAG	1 cut(s)	1656
BbsI	GAAGAC	1 cut(s)	1638
Bbv12I	GWGCWC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	989
BbvI	GCAGC	6 cut(s)	543, 657, 658, 943, 1747, 1984
BccI	CCATC	5 cut(s)	122, 217, 416, 853, 1328
BceAI	ACGGC	2 cut(s)	334, 425
BcgI	CGANNNNNNTGC	4 cut(s)	576, 610, 1291, 1325
BciT130I	CCWGG	4 cut(s)	365, 807, 1422, 1528
BcoDI	GTCTC	2 cut(s)	465, 731
BfaI	CTAG	5 cut(s)	707, 753, 1368, 1475, 1884
BfmI	CTRYAG	1 cut(s)	1650
BglII	AGATCT	1 cut(s)	755
Bme1390I	CCNGG	4 cut(s)	365, 807, 1422, 1528
Bme18I	GGWCC	2 cut(s)	226, 346
BmeT110I	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
BmgT120I	GGNCC	2 cut(s)	226, 346
BmiI	GGNNCC	8 cut(s)	227, 228, 347, 358, 623, 772, 1822, 1965
BmrFI	CCNGG	4 cut(s)	365, 807, 1422, 1528
BmsI	GCATC	3 cut(s)	574, 1466, 1770
BpiI	GAAGAC	1 cut(s)	1638
BpmI	CTGGAG	2 cut(s)	1251, 1317
Bpu10I	CCTNAGC	1 cut(s)	989
Bpu14I	TTCGAA	1 cut(s)	1247
BpuEI	CTTGAG	2 cut(s)	1148, 1823
Bsa29I	ATCGAT	1 cut(s)	1480
BsaAI	YACGTR	1 cut(s)	1071
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	5 cut(s)	316, 393, 806, 1061, 1421
BsaWI	WCCGGW	2 cut(s)	456, 624
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 111, 163, 193, 341, 371, 599, 629
Bsc4I	CCNNNNNNNGG	7 cut(s)	222, 223, 1170, 1422, 1774, 1832, 1835
Bse118I	RCCGGY	5 cut(s)	353, 497, 624, 642, 1877
Bse21I	CCTNAGG	2 cut(s)	341, 419
Bse3DI	GCAATG	1 cut(s)	1089
BseBI	CCWGG	4 cut(s)	365, 807, 1422, 1528
BseCI	ATCGAT	1 cut(s)	1480
BseDI	CCNNGG	5 cut(s)	316, 393, 806, 1061, 1421
BseGI	GGATG	7 cut(s)	114, 209, 453, 589, 718, 1336, 1903
BseLI	CCNNNNNNNGG	7 cut(s)	222, 223, 1170, 1422, 1774, 1832, 1835
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	8 cut(s)	355, 410, 516, 927, 980, 1170, 1703, 1947
BseRI	GAGGAG	4 cut(s)	23, 68, 124, 620
BseSI	GKGCMC	2 cut(s)	1825, 1939
BseXI	GCAGC	6 cut(s)	543, 657, 658, 943, 1747, 1984
BseYI	CCCAGC	2 cut(s)	294, 1968
BsgI	GTGCAG	1 cut(s)	1754
Bsh1236I	CGCG	2 cut(s)	279, 312
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	6 cut(s)	249, 324, 450, 1108, 1598, 1877
BshNI	GGYRCC	2 cut(s)	621, 1820
BshTI	ACCGGT	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	1480
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	963
BsiHKCI	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
BsiSI	CCGG	6 cut(s)	354, 457, 498, 625, 643, 1878
BslFI	GGGAC	3 cut(s)	212, 359, 823
BslI	CCNNNNNNNGG	7 cut(s)	222, 223, 1170, 1422, 1774, 1832, 1835
BsmAI	GTCTC	2 cut(s)	465, 731
BsmFI	GGGAC	3 cut(s)	212, 359, 823
BsmI	GAATGC	3 cut(s)	400, 544, 1531
BsnI	GGCC	6 cut(s)	249, 324, 450, 1108, 1598, 1877
Bso31I	GGTCTC	1 cut(s)	465
BsoBI	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
Bsp119I	TTCGAA	1 cut(s)	1247
Bsp1286I	GDGCHC	4 cut(s)	775, 963, 1825, 1939
Bsp1407I	TGTACA	1 cut(s)	1039
BspANI	GGCC	6 cut(s)	249, 324, 450, 1108, 1598, 1877
BspCNI	CTCAG	8 cut(s)	354, 411, 515, 928, 981, 1169, 1704, 1948
BspDI	ATCGAT	1 cut(s)	1480
BspFNI	CGCG	2 cut(s)	279, 312
BspLI	GGNNCC	8 cut(s)	227, 228, 347, 358, 623, 772, 1822, 1965
BspPI	GGATC	4 cut(s)	1383, 1434, 1958, 1971
BspT104I	TTCGAA	1 cut(s)	1247
BspT107I	GGYRCC	2 cut(s)	621, 1820
BspTNI	GGTCTC	1 cut(s)	465
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	5 cut(s)	353, 497, 624, 642, 1877
BsrGI	TGTACA	1 cut(s)	1039
BssAI	RCCGGY	5 cut(s)	353, 497, 624, 642, 1877
BssECI	CCNNGG	5 cut(s)	316, 393, 806, 1061, 1421
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	1656
BssT1I	CCWWGG	1 cut(s)	1061
Bst2BI	CACGAG	1 cut(s)	1656
Bst2UI	CCWGG	4 cut(s)	365, 807, 1422, 1528
Bst4CI	ACNGT	3 cut(s)	577, 843, 1953
Bst6I	CTCTTC	2 cut(s)	66, 1767
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	3 cut(s)	652, 1399, 1934
BstAUI	TGTACA	1 cut(s)	1039
BstBAI	YACGTR	1 cut(s)	1071
BstBI	TTCGAA	1 cut(s)	1247
BstC8I	GCNNGC	3 cut(s)	251, 644, 963
BstDEI	CTNAG	9 cut(s)	341, 419, 502, 936, 989, 1024, 1156, 1712, 1956
BstDSI	CCRYGG	1 cut(s)	316
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	7 cut(s)	114, 209, 453, 589, 718, 1336, 1903
BstFNI	CGCG	2 cut(s)	279, 312
BstHHI	GCGC	1 cut(s)	400
BstMAI	GTCTC	2 cut(s)	465, 731
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	6 cut(s)	318, 404, 548, 652, 1399, 1934
BstNI	CCWGG	4 cut(s)	365, 807, 1422, 1528
BstNSI	RCATGY	1 cut(s)	988
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	4 cut(s)	363, 805, 1420, 1526
BstSFI	CTRYAG	1 cut(s)	1650
BstSLI	GKGCMC	2 cut(s)	1825, 1939
BstSNI	TACGTA	1 cut(s)	1071
BstUI	CGCG	2 cut(s)	279, 312
BstV1I	GCAGC	6 cut(s)	543, 657, 658, 943, 1747, 1984
BstV2I	GAAGAC	1 cut(s)	1638
BstX2I	RGATCY	3 cut(s)	755, 1426, 1963
BstYI	RGATCY	3 cut(s)	755, 1426, 1963
Bsu15I	ATCGAT	1 cut(s)	1480
Bsu36I	CCTNAGG	2 cut(s)	341, 419
BsuRI	GGCC	6 cut(s)	249, 324, 450, 1108, 1598, 1877
BsuTUI	ATCGAT	1 cut(s)	1480
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	7 cut(s)	114, 209, 453, 589, 718, 1336, 1903
BtsI	GCAGTG	4 cut(s)	549, 1251, 1449, 1614
BtsIMutI	CAGTG	4 cut(s)	549, 1251, 1449, 1614
Cac8I	GCNNGC	3 cut(s)	251, 644, 963
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	5 cut(s)	353, 497, 624, 642, 1877
Cfr13I	GGNCC	2 cut(s)	226, 346
ClaI	ATCGAT	1 cut(s)	1480
CseI	GACGC	4 cut(s)	268, 301, 392, 1391
Csp6I	GTAC	4 cut(s)	430, 622, 788, 1040
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	7 cut(s)	719, 985, 1502, 1675, 1816, 1832, 1867
CviQI	GTAC	4 cut(s)	430, 622, 788, 1040
DdeI	CTNAG	9 cut(s)	341, 419, 502, 936, 989, 1024, 1156, 1712, 1956
DraIII	CACNNNGTG	1 cut(s)	1934
EaeI	YGGCCR	2 cut(s)	247, 1875
Eam1104I	CTCTTC	2 cut(s)	66, 1767
EarI	CTCTTC	2 cut(s)	66, 1767
EciI	GGCGGA	4 cut(s)	247, 394, 533, 1719
Ecl136II	GAGCTC	1 cut(s)	961
Eco105I	TACGTA	1 cut(s)	1071
Eco130I	CCWWGG	1 cut(s)	1061
Eco147I	AGGCCT	2 cut(s)	450, 1598
Eco24I	GRGCYC	2 cut(s)	775, 963
Eco31I	GGTCTC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	226, 346
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	7 cut(s)	135, 786, 1098, 1340, 1650, 1791, 1800
Eco81I	CCTNAGG	2 cut(s)	341, 419
Eco88I	CYCGRG	5 cut(s)	392, 425, 774, 793, 1592
Eco91I	GGTNACC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	961
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	1350
EcoRII	CCWGG	4 cut(s)	363, 805, 1420, 1526
EcoT14I	CCWWGG	1 cut(s)	1061
EcoT38I	GRGCYC	2 cut(s)	775, 963
ErhI	CCWWGG	1 cut(s)	1061
FaeI	CATG	7 cut(s)	722, 988, 1505, 1678, 1819, 1835, 1870
FalI	AAGNNNNNCTT	2 cut(s)	1007, 1039
FaqI	GGGAC	3 cut(s)	212, 359, 823
FatI	CATG	7 cut(s)	718, 984, 1501, 1674, 1815, 1831, 1866
FauI	CCCGC	1 cut(s)	239
FokI	GGATG	7 cut(s)	101, 196, 440, 596, 725, 1343, 1910
FriOI	GRGCYC	2 cut(s)	775, 963
FspBI	CTAG	5 cut(s)	707, 753, 1368, 1475, 1884
GlaI	GCGC	1 cut(s)	399
GsaI	CCCAGC	2 cut(s)	298, 1972
GsuI	CTGGAG	2 cut(s)	1251, 1317
HaeIII	GGCC	6 cut(s)	249, 324, 450, 1108, 1598, 1877
HapII	CCGG	6 cut(s)	354, 457, 498, 625, 643, 1878
HgaI	GACGC	4 cut(s)	268, 301, 392, 1391
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	722, 988, 1505, 1678, 1819, 1835, 1870
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	9 cut(s)	473, 593, 610, 739, 1087, 1160, 1523, 1839, 1996
HpaII	CCGG	6 cut(s)	354, 457, 498, 625, 643, 1878
HphI	GGTGA	6 cut(s)	150, 361, 610, 697, 1558, 1941
Hpy166II	GTNNAC	5 cut(s)	316, 481, 942, 1040, 1681
Hpy188I	TCNGA	8 cut(s)	888, 1102, 1147, 1159, 1431, 1713, 1957, 1995
Hpy8I	GTNNAC	5 cut(s)	316, 481, 942, 1040, 1681
Hpy99I	CGWCG	5 cut(s)	272, 386, 437, 440, 1407
HpyCH4III	ACNGT	3 cut(s)	577, 843, 1953
HpyCH4IV	ACGT	4 cut(s)	267, 432, 1070, 1726
HpyCH4V	TGCA	9 cut(s)	542, 587, 655, 718, 1358, 1442, 1499, 1603, 1735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	318, 404, 548, 652, 1399, 1934
HpyF3I	CTNAG	9 cut(s)	341, 419, 502, 936, 989, 1024, 1156, 1712, 1956
HpySE526I	ACGT	4 cut(s)	267, 432, 1070, 1726
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	7 cut(s)	722, 988, 1505, 1678, 1819, 1835, 1870
HspAI	GCGC	1 cut(s)	398
KflI	GGGWCCC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	642
KroNI	GCCGGC	1 cut(s)	644
LmnI	GCTCC	6 cut(s)	50, 362, 770, 958, 1232, 1298
Lsp1109I	GCAGC	6 cut(s)	543, 657, 658, 943, 1747, 1984
LweI	GCATC	3 cut(s)	574, 1466, 1770
MaeI	CTAG	5 cut(s)	707, 753, 1368, 1475, 1884
MaeII	ACGT	4 cut(s)	267, 432, 1070, 1726
MaeIII	GTNAC	4 cut(s)	280, 367, 568, 1546
MbiI	CCGCTC	1 cut(s)	45
MboII	GAAGA	9 cut(s)	16, 53, 141, 156, 923, 1013, 1643, 1784, 1790
MflI	RGATCY	3 cut(s)	755, 1426, 1963
MhlI	GDGCHC	4 cut(s)	775, 963, 1825, 1939
MluCI	AATT	7 cut(s)	141, 1203, 1341, 1350, 1394, 1716, 1752
MluI	ACGCGT	1 cut(s)	277
MlyI	GAGTC	4 cut(s)	467, 733, 1096, 1990
MmeI	TCCRAC	1 cut(s)	684
MroNI	GCCGGC	1 cut(s)	642
MseI	TTAA	5 cut(s)	87, 617, 996, 1361, 1464
MspI	CCGG	6 cut(s)	354, 457, 498, 625, 643, 1878
MspR9I	CCNGG	4 cut(s)	365, 807, 1422, 1528
Mva1269I	GAATGC	3 cut(s)	400, 544, 1531
MvaI	CCWGG	4 cut(s)	365, 807, 1422, 1528
MvnI	CGCG	2 cut(s)	279, 312
MwoI	GCNNNNNNNGC	6 cut(s)	318, 404, 548, 652, 1399, 1934
NaeI	GCCGGC	1 cut(s)	644
NgoMIV	GCCGGC	1 cut(s)	642
NlaIII	CATG	7 cut(s)	722, 988, 1505, 1678, 1819, 1835, 1870
NlaIV	GGNNCC	8 cut(s)	227, 228, 347, 358, 623, 772, 1822, 1965
NmuCI	GTSAC	3 cut(s)	280, 367, 1546
NspI	RCATGY	1 cut(s)	988
NspV	TTCGAA	1 cut(s)	1247
PaeR7I	CTCGAG	3 cut(s)	425, 793, 1592
PceI	AGGCCT	2 cut(s)	450, 1598
PcsI	WCGNNNNNNNCGW	4 cut(s)	276, 390, 432, 438
PctI	GAATGC	3 cut(s)	400, 544, 1531
PdiI	GCCGGC	1 cut(s)	644
PfeI	GAWTC	5 cut(s)	593, 610, 1160, 1523, 1839
PflFI	GACNNNGTC	1 cut(s)	476
PinAI	ACCGGT	1 cut(s)	624
PleI	GAGTC	4 cut(s)	467, 733, 1095, 1990
PpsI	GAGTC	4 cut(s)	467, 733, 1095, 1990
Ppu21I	YACGTR	1 cut(s)	1071
PpuMI	RGGWCCY	1 cut(s)	226
PsiI	TTATAA	3 cut(s)	1208, 1278, 1722
Psp124BI	GAGCTC	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	4 cut(s)	363, 805, 1420, 1526
PspEI	GGTNACC	1 cut(s)	367
PspFI	CCCAGC	2 cut(s)	294, 1968
PspGI	CCWGG	4 cut(s)	363, 805, 1420, 1526
PspN4I	GGNNCC	8 cut(s)	227, 228, 347, 358, 623, 772, 1822, 1965
PspPI	GGNCC	2 cut(s)	226, 346
PspPPI	RGGWCCY	1 cut(s)	226
PspXI	VCTCGAGB	2 cut(s)	425, 1592
PsuI	RGATCY	3 cut(s)	755, 1426, 1963
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	4 cut(s)	431, 623, 789, 1041
RsaNI	GTAC	4 cut(s)	430, 622, 788, 1040
SacI	GAGCTC	1 cut(s)	963
SaqAI	TTAA	5 cut(s)	87, 617, 996, 1361, 1464
Sau96I	GGNCC	2 cut(s)	226, 346
SchI	GAGTC	4 cut(s)	467, 733, 1096, 1990
ScrFI	CCNGG	4 cut(s)	365, 807, 1422, 1528
SduI	GDGCHC	4 cut(s)	775, 963, 1825, 1939
SfaNI	GCATC	3 cut(s)	574, 1466, 1770
SfcI	CTRYAG	1 cut(s)	1650
Sfr274I	CTCGAG	3 cut(s)	425, 793, 1592
SfuI	TTCGAA	1 cut(s)	1247
SinI	GGWCC	2 cut(s)	226, 346
SlaI	CTCGAG	3 cut(s)	425, 793, 1592
SmlI	CTYRAG	5 cut(s)	425, 793, 1127, 1592, 1802
SmoI	CTYRAG	5 cut(s)	425, 793, 1127, 1592, 1802
SnaBI	TACGTA	1 cut(s)	1071
Sse9I	AATT	7 cut(s)	141, 1203, 1341, 1350, 1394, 1716, 1752
SseBI	AGGCCT	2 cut(s)	450, 1598
SspMI	CTAG	5 cut(s)	707, 753, 1368, 1475, 1884
SstI	GAGCTC	1 cut(s)	963
StuI	AGGCCT	2 cut(s)	450, 1598
StyD4I	CCNGG	4 cut(s)	363, 805, 1420, 1526
StyI	CCWWGG	1 cut(s)	1061
TaaI	ACNGT	3 cut(s)	577, 843, 1953
TaiI	ACGT	4 cut(s)	270, 435, 1073, 1729
TaqI	TCGA	8 cut(s)	426, 463, 794, 904, 1090, 1247, 1480, 1593
TasI	AATT	7 cut(s)	141, 1203, 1341, 1350, 1394, 1716, 1752
TatI	WGTACW	1 cut(s)	1039
TauI	GCSGC	5 cut(s)	249, 294, 324, 518, 676
TfiI	GAWTC	5 cut(s)	593, 610, 1160, 1523, 1839
Tru1I	TTAA	5 cut(s)	87, 617, 996, 1361, 1464
Tru9I	TTAA	5 cut(s)	87, 617, 996, 1361, 1464
TscAI	CASTG	4 cut(s)	549, 1258, 1449, 1621
TseFI	GTSAC	3 cut(s)	280, 367, 1546
TseI	GCWGC	6 cut(s)	556, 646, 670, 931, 1735, 1972
Tsp45I	GTSAC	3 cut(s)	280, 367, 1546
TspDTI	ATGAA	4 cut(s)	135, 506, 924, 1014
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	4 cut(s)	549, 1258, 1449, 1621
Tth111I	GACNNNGTC	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	226, 346
XapI	RAATTY	2 cut(s)	1350, 1716
XbaI	TCTAGA	2 cut(s)	706, 752
XceI	RCATGY	1 cut(s)	988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1566
XhoI	CTCGAG	3 cut(s)	425, 793, 1592
XspI	CTAG	5 cut(s)	707, 753, 1368, 1475, 1884
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.