Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035971.1

Orthogroup ID

OG0007392

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1660

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035971.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

gtggaattgagggaattcctgcattaacatctagtttggatcaaacaaagatagagcaatttctgagtcgttgctctgccagaccaggggatctgatcttgtttgcagtgggtcatcaggcatcagttaataaaaccctagatcgattacgggtctttgttgcacatgagcttgatttgattgatgattccaggcattcagttctgtgggtgactgatttcccaatgtttgaatggaatgatttagagcaaaggcttgaggccttgcaccaccccttcactgccccgaaccctgaagacataaatgatctttctacagctcgtgctttagcgtatgacatggtttacaatggagttgagattggtggcggaagtctgagaatttataaacgtgaggtgcagcaaaaggttttggaaattgttggcatctcccctgaggaggctgaagcgaagtttggctatcttcttgaggcattagacatgggtgcccctcctcatggtattgaattctgtgacatcactgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

GAD tRNA-synt_2 tRNA_anti-codon

Protein Analysis

174

Amino Acids

19.4

Weight (kDa)

4.67

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33760 AT4G33760
fragaria_vesca	FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040 FvH4_2g03040
malus_domestica	MD10G1112200.v1.1
prunus_persica	Prupe.8G151800_v2.0.a1
pyrus_communis	pycom10g09720
rosa_chinensis	RchiOBHm_Chr6g0247831
rosa_laevigata	RLG00000015175
rosa_multiflora	Rmu_sc0001048.1_g000005 Rmu_sc0035971.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433200 Rroxscaffold_7G00213610
rosa_rugosa	Rorug05G0529400
rosa_samantha	Rh6AG044100 Rh6BG038800 Rh6CG037600 Rh6DG034600
rosa_wichuraiana	Rw6G003820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	484
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	47, 98
AcsI	RAATTY	3 cut(s)	14, 380, 505
AcuI	CTGAAG	2 cut(s)	314, 464
AfiI	CCNNNNNNNGG	3 cut(s)	86, 438, 496
AgsI	TTSAA	2 cut(s)	232, 505
AjnI	CCWGG	2 cut(s)	84, 190
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	171, 319
AluI	AGCT	2 cut(s)	171, 319
AlwI	GGATC	2 cut(s)	47, 98
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	3 cut(s)	14, 380, 505
AsuHPI	GGTGA	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	411
BciT130I	CCWGG	2 cut(s)	86, 192
BfaI	CTAG	2 cut(s)	32, 139
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	86, 192
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	86, 192
BmsI	GCATC	2 cut(s)	130, 434
BpiI	GAAGAC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	277, 487
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 438, 496
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	86, 192
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	86, 438, 496
BseMII	CTCAG	3 cut(s)	55, 367, 425
BseRI	GAGGAG	2 cut(s)	451, 482
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	86, 438, 496
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	39, 90, 95, 141, 306
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	3 cut(s)	56, 368, 426
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	47, 98
BspT107I	GGYRCC	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	39, 90, 95, 141, 306
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	86, 192
Bst4CI	ACNGT	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	64, 376, 434
BstKTI	GATC	5 cut(s)	42, 93, 98, 144, 309
BstMBI	GATC	5 cut(s)	39, 90, 95, 141, 306
BstNI	CCWGG	2 cut(s)	86, 192
BstSCI	CCNGG	2 cut(s)	84, 190
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	144
BtsI	GCAGTG	2 cut(s)	113, 278
BtsIMutI	CAGTG	3 cut(s)	113, 278, 518
ClaI	ATCGAT	1 cut(s)	144
CviAII	CATG	4 cut(s)	166, 339, 480, 496
CviJI	RGCY	6 cut(s)	171, 255, 262, 319, 442, 458
CviKI_1	RGCY	6 cut(s)	171, 255, 262, 319, 442, 458
DdeI	CTNAG	3 cut(s)	64, 376, 434
DpnI	GATC	5 cut(s)	41, 92, 97, 143, 308
DpnII	GATC	5 cut(s)	39, 90, 95, 141, 306
EciI	GGCGGA	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	314, 464
Eco81I	CCTNAGG	1 cut(s)	434
EcoRI	GAATTC	2 cut(s)	14, 505
EcoRII	CCWGG	2 cut(s)	84, 190
FaeI	CATG	4 cut(s)	169, 342, 483, 499
FaiI	YATR	7 cut(s)	167, 301, 335, 340, 386, 481, 497
FatI	CATG	4 cut(s)	165, 338, 479, 495
Fnu4HI	GCNGC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	400
FspBI	CTAG	2 cut(s)	32, 139
GluI	GCNGC	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	169, 342, 483, 499
HinfI	GANTC	2 cut(s)	66, 187
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	65, 95, 377
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	5 cut(s)	22, 106, 163, 267, 399
HpyF3I	CTNAG	3 cut(s)	64, 376, 434
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	169, 342, 483, 499
Kzo9I	GATC	5 cut(s)	39, 90, 95, 141, 306
LpnPI	CCDG	9 cut(s)	32, 71, 93, 98, 103, 177, 204, 305, 446
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	130, 434
MaeI	CTAG	2 cut(s)	32, 139
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	210, 511
MalI	GATC	5 cut(s)	41, 92, 97, 143, 308
MboI	GATC	5 cut(s)	39, 90, 95, 141, 306
MboII	GAAGA	2 cut(s)	307, 454
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	6 cut(s)	5, 14, 58, 380, 416, 505
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	3, 252, 387, 429, 432, 462, 500, 503
MseI	TTAA	2 cut(s)	25, 128
MslI	CAYNNNNRTG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	86, 192
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	86, 192
NdeII	GATC	5 cut(s)	39, 90, 95, 141, 306
NlaIII	CATG	4 cut(s)	169, 342, 483, 499
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	2 cut(s)	210, 511
PceI	AGGCCT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	84, 190
PspGI	CCWGG	2 cut(s)	84, 190
PspN4I	GGNNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	25, 128
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	5 cut(s)	39, 90, 95, 141, 306
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	86, 192
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	5 cut(s)	173, 321, 393, 398, 410
SfaNI	GCATC	2 cut(s)	130, 434
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	2 cut(s)	256, 466
SmoI	CTYRAG	2 cut(s)	256, 466
Sse9I	AATT	6 cut(s)	5, 14, 58, 380, 416, 505
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	32, 139
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	84, 190
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	5, 14, 58, 380, 416, 505
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	25, 128
Tru9I	TTAA	2 cut(s)	25, 128
TscAI	CASTG	3 cut(s)	113, 285, 525
TseFI	GTSAC	2 cut(s)	210, 511
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	2 cut(s)	210, 511
TspRI	CASTG	3 cut(s)	113, 285, 525
XapI	RAATTY	3 cut(s)	14, 380, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	32, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.