FvH4_2g06740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016253
Physical Location & Seq
Forward (+)
5598986 .. 5600326
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06740.t1

Sequence Viewer

Length: 1011 bp
ATGGAAATCCCAGATGATCACTTTCCCTATGTTAATATTAGTGCACCCACCAGTCCTGCTGGTATGTGCAGCCCTCACAATAATCTCTGCTTCTACAGTGTTCCCAGTAGTCCTACAGGAGAAACCTCAAGTGATACTACTAGTCCATTTGGTTACCAAACTGATCTAAATGAGTGCCCAACACCAATGTCATACCACGACGCCAATTCCTATCTTGATGATGACTTTGAATTTGATTCCTGTCGAAGTTTTAGTCTAAATGCCAGTGATCAATCGAGTCAGAACTCGTTTGGCCTCGATAGAAAGCCAAGGCAGCGGGGGGATTCACTTCCCACCATGGCATTTGCCGATGAGCTTTTCTGTGATGGGAAAGTCATGCCGCTTGCACCTCCACTCAAGCTTCCGCCGCGACTTCAGAGGAAAAGAAATGAAAAGCTGGCAAGCCAAGAAGGGACTGGTGCTTCTGTCCCGGGTTCTCCAAGCAACTTTGTGCTTAAGTTGCCCTTTGGATATAAGAGGTTGTGGAATGATGATTTTGATCCATTCATGGTGGCATTGAAGAATGTCAAGGAGGAAAAGAAGGAGAAAGCTTCAGCCGCTTCAGCCTCATATGTTGCAAACAATCAGAGCACGAATGAGCCTGCTGGGGATGATGAAGACTCAACAACTTCTGCACAAGAACCAATATCAAAAGAAATGGGGGCACAAATTGTTCCAAAGAGGCAGCTGGCTGAGCCGAAAGGAGTCGAGTTTGCAAGGCAAGTTAGACTTATTCAAATGGGTCAGATGAGTAAGTTGGACAAGTTAGGGAAGCAAAGTGAAAGAGATGAGAAAGCAGAATCAACGAGGAAGAAGCCAACGTTTCTAAGGAAACTGAACTTCAAGTCTGGCAGAGCAGCTACTTGCGAAGAGGAGAAAAGGGTATCTCATCCTCGTCCGCATTCTCAACTGAGCAAGATGGTACTCATGCATTACAAGCCAAGAGGGATACCTTGCTTGGGTTATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

337

Amino Acids

37.39

Weight (kDa)

7.0

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06740
malus_domestica MD00G1045800.v1.1 MD03G1164300.v1.1
prunus_persica Prupe.4G260600_v2.0.a1
pyrus_communis pycom12561g00260
rosa_chinensis RchiOBHm_Chr6g0258931
rosa_laevigata RLG00000014570
rosa_multiflora Rmu_sc0004347.1_g000009
rosa_roxburghii Rroxscaffold_7G00206180
rosa_rugosa Rorug05G0584500
rosa_samantha Rh6AG100900 Rh6BG092800 Rh6CG090100 Rh6DG084300
rosa_wichuraiana Rw6G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AccII CGCG 1 cut(s) 409
AciI CCGC 6 cut(s) 316, 380, 404, 407, 597, 938
AclI AACGTT 1 cut(s) 860
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 3 cut(s) 398, 576, 585
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 963
AfiI CCNNNNNNNGG 1 cut(s) 998
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 230, 559, 776, 883
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 6 cut(s) 355, 400, 436, 590, 727, 899
AluI AGCT 6 cut(s) 355, 400, 436, 590, 727, 899
Alw21I GWGCWC 2 cut(s) 46, 632
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 69, 313, 724, 896
ApoI RAATTY 1 cut(s) 230
ArsI GACNNNNNNTTYG 4 cut(s) 215, 238, 247, 270
AsuC2I CCSGG 2 cut(s) 470, 471
AvaI CYCGRG 1 cut(s) 469
BaeGI GKGCMC 3 cut(s) 46, 179, 706
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 46, 632
BbvI GCAGC 4 cut(s) 81, 325, 736, 908
BccI CCATC 2 cut(s) 359, 952
BciVI GTATCC 1 cut(s) 981
BclI TGATCA 2 cut(s) 16, 268
BcnI CCSGG 2 cut(s) 470, 471
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 94, 114
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 981
BisI GCNGC 7 cut(s) 70, 314, 380, 407, 597, 725, 897
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 7 cut(s) 71, 315, 381, 408, 598, 726, 898
Bme1390I CCNGG 2 cut(s) 470, 471
BmeT110I CYCGRG 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 470, 471
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 663
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 112, 380
BpuMI CCSGG 2 cut(s) 470, 471
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 308, 336, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse1I ACTGG 4 cut(s) 51, 105, 264, 460
Bse8I GATNNNNATC 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 308, 336, 469
BseGI GGATG 2 cut(s) 655, 928
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMII CTCAG 2 cut(s) 723, 941
BseNI ACTGG 4 cut(s) 51, 105, 264, 460
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 3 cut(s) 46, 179, 706
BseXI GCAGC 4 cut(s) 81, 325, 736, 908
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 2 cut(s) 88, 657
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 46, 632
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 2 cut(s) 452, 466
BslI CCNNNNNNNGG 1 cut(s) 998
BsmFI GGGAC 2 cut(s) 452, 466
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 4 cut(s) 46, 179, 632, 706
Bsp143I GATC 4 cut(s) 16, 163, 268, 538
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 6 cut(s) 316, 380, 404, 407, 597, 938
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 724, 942
BspFNI CGCG 1 cut(s) 409
BspPI GGATC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 494
BsrI ACTGG 4 cut(s) 51, 105, 264, 460
BssECI CCNNGG 3 cut(s) 308, 336, 469
BssMI GATC 4 cut(s) 16, 163, 268, 538
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 308, 336
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 5 cut(s) 384, 438, 442, 642, 729
BstDEI CTNAG 3 cut(s) 732, 866, 950
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 2 cut(s) 655, 928
BstFNI CGCG 1 cut(s) 409
BstKTI GATC 4 cut(s) 19, 166, 271, 541
BstMBI GATC 4 cut(s) 16, 163, 268, 538
BstMWI GCNNNNNNNGC 7 cut(s) 313, 406, 499, 596, 602, 733, 976
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 468, 469
BstSFI CTRYAG 2 cut(s) 94, 114
BstSLI GKGCMC 3 cut(s) 46, 179, 706
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 4 cut(s) 81, 325, 736, 908
BstV2I GAAGAC 1 cut(s) 663
BsuI GTATCC 1 cut(s) 981
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 655, 928
BtsIMutI CAGTG 2 cut(s) 103, 271
Cac8I GCNNGC 5 cut(s) 384, 438, 442, 642, 729
Cfr9I CCCGGG 1 cut(s) 469
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 962
CviAII CATG 4 cut(s) 337, 376, 547, 967
CviQI GTAC 1 cut(s) 962
DdeI CTNAG 3 cut(s) 732, 866, 950
DpnI GATC 4 cut(s) 18, 165, 270, 540
DpnII GATC 4 cut(s) 16, 163, 268, 538
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
EciI GGCGGA 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 308, 336
Eco57I CTGAAG 3 cut(s) 398, 576, 585
Eco88I CYCGRG 1 cut(s) 469
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 308, 336
EcoT22I ATGCAT 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 308, 336
FaeI CATG 4 cut(s) 340, 379, 550, 970
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 753, 785
FaqI GGGAC 2 cut(s) 452, 466
FatI CATG 4 cut(s) 336, 375, 546, 966
FauI CCCGC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 2 cut(s) 16, 268
Fnu4HI GCNGC 7 cut(s) 70, 314, 380, 407, 597, 725, 897
FokI GGATG 2 cut(s) 662, 915
Fsp4HI GCNGC 7 cut(s) 70, 314, 380, 407, 597, 725, 897
FspBI CTAG 1 cut(s) 141
GluI GCNGC 7 cut(s) 70, 314, 380, 407, 597, 725, 897
GsaI CCCAGC 1 cut(s) 648
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 340, 379, 550, 970
HindIII AAGCTT 2 cut(s) 398, 588
HinfI GANTC 6 cut(s) 236, 277, 323, 659, 744, 839
HpaII CCGG 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 4 cut(s) 282, 417, 627, 786
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 443, 574
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 860
HpyCH4V TGCA 7 cut(s) 44, 69, 386, 617, 674, 755, 970
HpyF10VI GCNNNNNNNGC 7 cut(s) 313, 406, 499, 596, 602, 733, 976
HpyF3I CTNAG 3 cut(s) 732, 866, 950
HpySE526I ACGT 1 cut(s) 860
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 340, 379, 550, 970
Ksp22I TGATCA 2 cut(s) 16, 268
Kzo9I GATC 4 cut(s) 16, 163, 268, 538
Lsp1109I GCAGC 4 cut(s) 81, 325, 736, 908
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 860
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 18, 165, 270, 540
MboI GATC 4 cut(s) 16, 163, 268, 538
MboII GAAGA 4 cut(s) 571, 668, 862, 920
MhlI GDGCHC 4 cut(s) 46, 179, 632, 706
MluCI AATT 3 cut(s) 205, 230, 708
MlyI GAGTC 3 cut(s) 286, 653, 753
MmeI TCCRAC 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 972
MseI TTAA 2 cut(s) 33, 495
MspA1I CMGCKG 2 cut(s) 316, 727
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 470, 471
Mva1269I GAATGC 1 cut(s) 940
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 7 cut(s) 313, 406, 499, 596, 602, 733, 976
NciI CCSGG 2 cut(s) 470, 471
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 610
NdeII GATC 4 cut(s) 16, 163, 268, 538
NlaIII CATG 4 cut(s) 340, 379, 550, 970
NsiI ATGCAT 1 cut(s) 972
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 3 cut(s) 236, 323, 839
PkrI GCNGC 7 cut(s) 71, 315, 381, 408, 598, 726, 898
PleI GAGTC 3 cut(s) 285, 653, 752
PpsI GAGTC 3 cut(s) 285, 653, 752
PsiI TTATAA 1 cut(s) 1005
Psp1406I AACGTT 1 cut(s) 860
PspEI GGTNACC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 727
RsaI GTAC 1 cut(s) 963
RsaNI GTAC 1 cut(s) 962
SaqAI TTAA 2 cut(s) 33, 495
SatI GCNGC 7 cut(s) 70, 314, 380, 407, 597, 725, 897
Sau3AI GATC 4 cut(s) 16, 163, 268, 538
SchI GAGTC 3 cut(s) 286, 653, 753
ScrFI CCNGG 2 cut(s) 470, 471
SduI GDGCHC 4 cut(s) 46, 179, 632, 706
SfcI CTRYAG 2 cut(s) 94, 114
SmaI CCCGGG 1 cut(s) 471
SmlI CTYRAG 3 cut(s) 127, 395, 494
SmoI CTYRAG 3 cut(s) 127, 395, 494
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 205, 230, 708
SsiI CCGC 6 cut(s) 316, 380, 404, 407, 597, 938
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 468, 469
StyI CCWWGG 2 cut(s) 308, 336
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 863
TaqI TCGA 4 cut(s) 244, 275, 297, 747
TasI AATT 3 cut(s) 205, 230, 708
TauI GCSGC 3 cut(s) 382, 409, 599
TfiI GAWTC 3 cut(s) 236, 323, 839
Tru1I TTAA 2 cut(s) 33, 495
Tru9I TTAA 2 cut(s) 33, 495
TscAI CASTG 2 cut(s) 103, 271
TseI GCWGC 4 cut(s) 69, 313, 724, 896
TspDTI ATGAA 3 cut(s) 444, 535, 669
TspMI CCCGGG 1 cut(s) 469
TspRI CASTG 2 cut(s) 103, 271
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 42
XapI RAATTY 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XmaI CCCGGG 1 cut(s) 469
XspI CTAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.