RchiOBHm_Chr6g0258931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016253
Physical Location & Seq
Forward (+)
14297542 .. 14298558
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23218

Sequence Viewer

Length: 1017 bp
ATGGAAATCCCAGATGATCACTTTCCCTATGTTAATATTAGTGCACCCACCAGTCCTGGTATATGCAGCCCTCACAATAACCTCTACTTCTACAGTGTTCCGAGTAGTCCTACCAGAGAAACCTCAACTGGTACTAGTCCATTAATTGGTTACCAAACTGATCTAAATGAGTGCCCTACACCAATGTCATACCACGACGCCAATGCCTATCTCGATGACTTTGAGTTTGAAACCGGTCTAAATTTTAGTCTTGATGTTGGTGATCAAAGTCTGGTCCAATCGGGCCCGTTTGGTCATGATAGAAAGCCAAGGCAGCGCGGGGATTCACTTCCGATCAGCATGGCATTTGCAGATGAGCTTTTCTGTGATGGGAAAGTCATGCCGCTTGCCCCTCCACTCAAGCTTCCACCGCGGCTTCAGAGGAACAGAAATGAAAAGCTGGCAAGCCAAGCAGAAACTGGTGCGTCTGTCCCGGGGTCTCCGAGTAATTTCGTGCTTAAATTGCCATTTGGATATAAGAGGTTGTGGAATGATGATTTTGATCCATTCATGGCGGCATTGAAAAATGTCAAGGAGGAAAAGAAGAAGAAAGCTTCAGCTGCTACGCCCTCATATGCTACAAACAATCAGACTACGAATGAGCCTGGGGACGAAGACGCAACAACTTCTGCGCCTGCGCCTGAACCGATATCGAGAGAAATGGGTGGACAAATTGTTCCAAAGAGGCAACTGACTCAGCCGAAAGGAGTCGAGTTTGCAAGGCAAGTCAGACTTATTCAAATGGGCCAGATGAGTAAGTTGGACAAGTTAGGGAAGCAAAGTGAAAGAGATGAGAAAGCAGAATCAATGAGGAAGAAGCCAACATTTCTAAGGAGACTAAGCTTTAAGTCTGGCAGAGCAGCTCATTGTGAGGAGAAAAGGGTATCTCATTCCCGTCCTCATTCTCAACTAAGCAAGATGGCATTGATGAACTACAAGCCCAGAGGGTTACTTTGCTTGGGTTATAAGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

338

Amino Acids

37.62

Weight (kDa)

8.93

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06740
malus_domestica MD00G1045800.v1.1 MD03G1164300.v1.1
prunus_persica Prupe.4G260600_v2.0.a1
pyrus_communis pycom12561g00260
rosa_chinensis RchiOBHm_Chr6g0258931
rosa_laevigata RLG00000014570
rosa_multiflora Rmu_sc0004347.1_g000009
rosa_roxburghii Rroxscaffold_7G00206180
rosa_rugosa Rorug05G0584500
rosa_samantha Rh6AG100900 Rh6BG092800 Rh6CG090100 Rh6DG084300
rosa_wichuraiana Rw6G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AccB7I CCANNNNNTGG 1 cut(s) 146
AccII CGCG 2 cut(s) 318, 412
AciI CCGC 5 cut(s) 318, 383, 410, 412, 554
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 401, 579
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 3 cut(s) 230, 562, 779
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 55, 643
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 8 cut(s) 358, 403, 439, 593, 599, 882, 902, 1014
AluI AGCT 8 cut(s) 358, 403, 439, 593, 599, 882, 902, 1014
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 483, 868
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 283, 784
ApaI GGGCCC 1 cut(s) 287
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 66, 313, 599, 899
ApoI RAATTY 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 143
AsiGI ACCGGT 1 cut(s) 233
AspLEI GCGC 3 cut(s) 318, 673, 679
AspS9I GGNCC 4 cut(s) 274, 283, 284, 784
AsuC2I CCSGG 2 cut(s) 473, 474
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 3 cut(s) 46, 176, 287
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 78, 325, 586, 911
BccI CCATC 2 cut(s) 362, 952
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 57, 645
BclI TGATCA 2 cut(s) 16, 262
BcnI CCSGG 2 cut(s) 473, 474
BcoDI GTCTC 2 cut(s) 483, 868
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 1015
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 7 cut(s) 67, 314, 383, 413, 555, 600, 900
BlsI GCNGC 7 cut(s) 68, 315, 384, 414, 556, 601, 901
Bme1390I CCNGG 4 cut(s) 57, 473, 474, 645
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 274, 283, 284, 784
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 4 cut(s) 57, 473, 474, 645
BpiI GAAGAC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 473, 474
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 51, 133, 463
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 57, 645
BseDI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 3 cut(s) 51, 133, 463
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 3 cut(s) 46, 176, 287
BseXI GCAGC 4 cut(s) 78, 325, 586, 911
Bsh1236I CGCG 2 cut(s) 318, 412
BshFI GGCC 2 cut(s) 285, 786
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 2 cut(s) 234, 473
BslFI GGGAC 2 cut(s) 455, 662
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 483, 868
BsmFI GGGAC 2 cut(s) 455, 662
BsnI GGCC 2 cut(s) 285, 786
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 472
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 46, 176, 287
Bsp143I GATC 5 cut(s) 16, 160, 262, 333, 541
BspACI CCGC 5 cut(s) 318, 383, 410, 412, 554
BspANI GGCC 2 cut(s) 285, 786
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 2 cut(s) 318, 412
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 51, 133, 463
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BssMI GATC 5 cut(s) 16, 160, 262, 333, 541
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 57, 645
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 4 cut(s) 387, 441, 445, 675
BstDEI CTNAG 4 cut(s) 735, 869, 878, 950
BstDSI CCRYGG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 149
BstFNI CGCG 2 cut(s) 318, 412
BstHHI GCGC 3 cut(s) 318, 673, 679
BstKTI GATC 5 cut(s) 19, 163, 265, 336, 544
BstMAI GTCTC 2 cut(s) 483, 868
BstMBI GATC 5 cut(s) 16, 160, 262, 333, 541
BstMWI GCNNNNNNNGC 5 cut(s) 313, 409, 449, 502, 599
BstNI CCWGG 2 cut(s) 57, 645
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 4 cut(s) 55, 471, 472, 643
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 3 cut(s) 46, 176, 287
BstUI CGCG 2 cut(s) 318, 412
BstV1I GCAGC 4 cut(s) 78, 325, 586, 911
BstV2I GAAGAC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 285, 786
BtgI CCRYGG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 4 cut(s) 387, 441, 445, 675
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 295
CfoI GCGC 3 cut(s) 318, 673, 679
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 4 cut(s) 274, 283, 284, 784
Cfr42I CCGCGG 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 472
CseI GACGC 3 cut(s) 206, 453, 665
Csp6I GTAC 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 4 cut(s) 296, 340, 379, 550
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 4 cut(s) 735, 869, 878, 950
DpnI GATC 5 cut(s) 18, 162, 264, 335, 543
DpnII GATC 5 cut(s) 16, 160, 262, 333, 541
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 690
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 401, 579
Eco88I CYCGRG 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 55, 643
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 299, 343, 382, 553
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 2 cut(s) 455, 662
FatI CATG 4 cut(s) 295, 339, 378, 549
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 2 cut(s) 16, 262
Fnu4HI GCNGC 7 cut(s) 67, 314, 383, 413, 555, 600, 900
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 7 cut(s) 67, 314, 383, 413, 555, 600, 900
FspBI CTAG 2 cut(s) 135, 1015
GlaI GCGC 3 cut(s) 317, 672, 678
GluI GCNGC 7 cut(s) 67, 314, 383, 413, 555, 600, 900
HaeIII GGCC 2 cut(s) 285, 786
HapII CCGG 2 cut(s) 234, 473
HgaI GACGC 3 cut(s) 206, 453, 665
HhaI GCGC 3 cut(s) 318, 673, 679
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 4 cut(s) 299, 343, 382, 553
Hin6I GCGC 3 cut(s) 316, 671, 677
HinP1I GCGC 3 cut(s) 316, 671, 677
HindIII AAGCTT 3 cut(s) 401, 591, 880
HinfI GANTC 4 cut(s) 323, 733, 747, 842
HpaII CCGG 2 cut(s) 234, 473
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 44, 707
Hpy188I TCNGA 6 cut(s) 102, 333, 420, 483, 630, 770
Hpy188III TCNNGA 4 cut(s) 212, 251, 296, 693
Hpy8I GTNNAC 2 cut(s) 44, 707
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 44, 66, 350, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 313, 409, 449, 502, 599
HpyF3I CTNAG 4 cut(s) 735, 869, 878, 950
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 4 cut(s) 299, 343, 382, 553
HspAI GCGC 3 cut(s) 316, 671, 677
Ksp22I TGATCA 2 cut(s) 16, 262
KspI CCGCGG 1 cut(s) 413
Kzo9I GATC 5 cut(s) 16, 160, 262, 333, 541
Lsp1109I GCAGC 4 cut(s) 78, 325, 586, 911
MaeI CTAG 2 cut(s) 135, 1015
MaeIII GTNAC 2 cut(s) 149, 987
MalI GATC 5 cut(s) 18, 162, 264, 335, 543
MboI GATC 5 cut(s) 16, 160, 262, 333, 541
MboII GAAGA 4 cut(s) 595, 598, 665, 865
MhlI GDGCHC 3 cut(s) 46, 176, 287
MluCI AATT 5 cut(s) 144, 241, 487, 500, 711
MlyI GAGTC 2 cut(s) 727, 756
MmeI TCCRAC 1 cut(s) 780
MseI TTAA 4 cut(s) 33, 143, 498, 885
MspA1I CMGCKG 2 cut(s) 412, 599
MspI CCGG 2 cut(s) 234, 473
MspR9I CCNGG 4 cut(s) 57, 473, 474, 645
MvaI CCWGG 2 cut(s) 57, 645
MvnI CGCG 2 cut(s) 318, 412
MwoI GCNNNNNNNGC 5 cut(s) 313, 409, 449, 502, 599
NciI CCSGG 2 cut(s) 473, 474
NdeI CATATG 1 cut(s) 613
NdeII GATC 5 cut(s) 16, 160, 262, 333, 541
NlaIII CATG 4 cut(s) 299, 343, 382, 553
NlaIV GGNNCC 1 cut(s) 285
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 2 cut(s) 323, 842
PflMI CCANNNNNTGG 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 7 cut(s) 68, 315, 384, 414, 556, 601, 901
PleI GAGTC 2 cut(s) 727, 755
PpsI GAGTC 2 cut(s) 727, 755
PshBI ATTAAT 1 cut(s) 143
PsiI TTATAA 1 cut(s) 1005
Psp6I CCWGG 2 cut(s) 55, 643
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 55, 643
PspN4I GGNNCC 1 cut(s) 285
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 4 cut(s) 274, 283, 284, 784
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 413
SaqAI TTAA 4 cut(s) 33, 143, 498, 885
SatI GCNGC 7 cut(s) 67, 314, 383, 413, 555, 600, 900
Sau3AI GATC 5 cut(s) 16, 160, 262, 333, 541
Sau96I GGNCC 4 cut(s) 274, 283, 284, 784
SchI GAGTC 2 cut(s) 727, 756
ScrFI CCNGG 4 cut(s) 57, 473, 474, 645
SduI GDGCHC 3 cut(s) 46, 176, 287
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 413
SgrBI CCGCGG 1 cut(s) 413
SinI GGWCC 1 cut(s) 274
SmaI CCCGGG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 5 cut(s) 144, 241, 487, 500, 711
SsiI CCGC 5 cut(s) 318, 383, 410, 412, 554
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 135, 1015
StyD4I CCNGG 4 cut(s) 55, 471, 472, 643
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 213, 692, 750
TasI AATT 5 cut(s) 144, 241, 487, 500, 711
TauI GCSGC 3 cut(s) 385, 415, 557
TfiI GAWTC 2 cut(s) 323, 842
Tru1I TTAA 4 cut(s) 33, 143, 498, 885
Tru9I TTAA 4 cut(s) 33, 143, 498, 885
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 66, 313, 599, 899
TspDTI ATGAA 3 cut(s) 447, 538, 983
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 146
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 143
XapI RAATTY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmaI CCCGGG 1 cut(s) 472
XspI CTAG 2 cut(s) 135, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.